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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059806 ID=TCONS_00059806|Name=TCONS_00059806|organism=Clytia hemisphaerica|type=transcript|length=2298bpRun BLAST on NCBI protein sequence of TCONS_00059806-protein >TCONS_00059806-protein ID=TCONS_00059806-protein|Name=TCONS_00059806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp MVIESQKISSTMGSMKKNQCSSIMERHQNDEVTFEGILEAAERTKDIIHNRun BLAST on NCBI transcript from alignment at scaffold_331:573917..623103+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059806 ID=TCONS_00059806|Name=TCONS_00059806|organism=Clytia hemisphaerica|type=transcript|length=49187bp|location=Sequence derived from alignment at scaffold_331:573917..623103+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_331:573917..623103+ >TCONS_00059806 ID=TCONS_00059806|Name=TCONS_00059806|organism=Clytia hemisphaerica|type=CDS|length=6318bp|location=Sequence derived from alignment at scaffold_331:573917..623103+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00059806 vs. Swiss-Prot (Human)
Match: SRR (Serine racemase OS=Homo sapiens GN=SRR PE=1 SV=1) HSP 1 Score: 231.106 bits (588), Expect = 3.042e-68 Identity = 137/327 (41.90%), Postives = 203/327 (62.08%), Query Frame = 3
Query: 927 VTFEGILEAAERTKDIIHNTPTMTCSYFDHLIGDDKKLFFKCEIFQKTGAFKIRGSANAVRRIIE---ERGKKFKVVTHSCGNGAFGLAYSAMVNGIPSTVVIPNNQS--KKESAQGYKAKVIQCEESPKMRKEMVRRVISEDPINTE--YIPTSDHPFCIEGVGSIGLEMLAQNPELDAILVACCFGSLISGIAKACKSVKPDIKIFAVEPERANDIAMSFEKGERVELTETPDTICDALKYSVGVQTWPIINEYVEPDVLLVSEEEIKKAMFMIFQRMKLVVEPXXXXXXXXXXXDQFRGLSKGLKNIGLVLCGGNADL-ENLPW 1883
++F + +A +D IH TP +T S + L G + LFFKCE+FQKTG+FKIRG+ NAVR ++ ER K VVTHS GN L Y+A + GIP+ +V+P KK + Q Y A ++ CE S + R+ + +RV E TE + + P I G G+I LE+L Q P +DA++V G +++GIA K++KP +K++A EP A+D S KG+ + P+TI D +K S+G+ TWPII + V+ D+ V+E+EIK A ++++RMKL++EP+A V +AA LS F+ +S +KNI +VL GGN DL ++ W
Sbjct: 7 ISFADVEKAHINIRDSIHLTPVLTSSILNQLTG--RNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPK-AVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKRVTEE----TEGIMVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSSIGLNTWPIIRDLVD-DIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICIVLSGGNVDLTSSITW 325 The following BLAST results are available for this feature:
BLAST of TCONS_00059806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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