TCONS_00059749 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059749
Unique NameTCONS_00059749
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059749 ID=TCONS_00059749|Name=TCONS_00059749|organism=Clytia hemisphaerica|type=transcript|length=1437bp
ttgaattctaagggcaaaacattaatttttgcactaagtgaaaaatgtgt
cacagaaataatcattttttagctttttttgtaaaatcagtccaaaaagt
aaccaaaaaataggtggcNATCATCGTTCAACTACCTCTTGATACTGACG
AAGAAATAGATACCACCAAAGTTATCAATTCTGTTCTTCCCACTAAAGAT
GTCGATTGTCTGAACGAGGTCAACACTGGGAAATTAGCACATGGTGATTT
GAAAGGCTTTCTACCTTGCACACCACACGGCTGCATGACCATGATCGAAG
AAAGCGGAATAGAATTACAAGGAAAACGAGCTGTGGTTGTTGGAAGATCG
AAAATTGTGGGTATGCCAATGTCAATGCTGTTAACTTGGGCAAACGCCAC
CGTCACCATTTGTCATTCAAGGACGCAAAATCTAGAAGATATTGTACGAG
AAGCTGATGTCTTAGTAGCAGCCTGTGGCCGTCCAAAGATGATCAAAGGC
TCGTGGATCAAACAAGGAGCGGTTGTTATTGACTGTGGTATTAACTCTAT
TGAAGATGCATCAAGAAAGAGTGGCAGAAGGTTGGTAGGGGATGTTGACT
ATGATGAAGCCAAGAGGAGAGCATCTTACATCACACCTGTACCCGGAGGT
GTTGGTCCAATGACAGTGTGCATGCTGATGAAGAATACGTTGGAAAGTGC
TAAACGACATTTGAATCTGCAGGATGAGAAACGTGAAGAAGCTGCTAAAT
AAAACAACCATCCTGAATTCCTTgggtttgaatattttttgacgtgGCAA
ACGAGAAATCATTTTGATTGCCAGAAATTTATCACTATAatattgtatta
gattttagaTGTAAATAGTTTGGTTATAATGTTTTATGTTATTTTCATtc
cttttttatataatatttagCTTAATATTAGctttttgaaacaaattttc
attataGATTCACTAACTAGCTTCAAATTTGATGTTCTCTAAAGAATAtg
tagaaaatattttgttacaaGCGCAATTGTACAAAGCTCGTTATATATTT
GGGTTTTTGAGCTAAAAACTTAGGCAAAGTTAGATATATCCCCTAGcatc
attaaatttttattttttcaagtaGATTCATAGATAGATTTTTCCAAAGT
TTTCACTAACATGACAGTAATTTTTAATCTAGTGTGATAattccaaatat
tttgatttattataATTTAATCAACTAAAATATTACAATATGTAAAGTAA
ATTATATTCAACAAAACCACTAAATTTAGTATGACAACTTTTGTGTctta
tgatttttattttataactttttattattttatgttgaatttagaaaaat
agAACCAAGACTGCTTCTCCTTCATCATTTCAGCTCCtttttaacacccc
tgtgtcagtgACCTGGTGAGATGCTTTAGGAATGGGG
Run BLAST on NCBI

transcript from alignment at scaffold_330:542756..546736-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059749 ID=TCONS_00059749|Name=TCONS_00059749|organism=Clytia hemisphaerica|type=transcript|length=3981bp|location=Sequence derived from alignment at scaffold_330:542756..546736- (Clytia hemisphaerica)
TTGAATTCTAAGGGCAAAACATTAATTTTTGCACTAAGTGAAAAATGTGT
CACAGAAATAATCATTTTTTAGCTTTTTTTGTAAAATCAGTCCAAAAAGT
AACCAAAAAATAGGTGGCNATCATCGTTCAACTACCTCTTGATACTGACG
AAGAAATAGATACCACCAAAGTTATCAATTCTGTTCTTCCCACTAAAGAT
GTCGATTGGTAAGCACGTGTGATTGACCTAGTGTAATTCATCATATGCAC
CACTGCAATGACTTCATGAAATGTGTAGATATAATGTTTTTGATTTTCGC
TTGCAGCTAATCATTCAATTTCAGAATAGGTGTAGGGGTGCATATTCTAA
ATTCCTTTCTCTTAAAACAGGGGTCTCATTTGAAAATTATAAGGGCTTGA
AATAAGGGTCGATCACCAGACATGCCCGACCCAAAAATCAACTTTTCAAG
CTAATGCACGCAACTCTGAACAAACATTTTGTACCGACCACTTGAAATCA
TTATGCGCCATGTTTAGCAATTTTACACCGTTTAGTGGGGCTTAATATAT
AGTATTCAAAAGAGAATTGTCTTTTGAATTTCAAATTTTTAAATCACACT
CTTTTAGTCTGAACGAGGTCAACACTGGGAAATTAGCACATGGTGATTTG
AAAGGCTTTCTACCTTGCACACCACACGGCTGCATGACCATGATCGAAGA
AAGCGGAATAGAATTACAAGGAAAACGAGCTGTGGTTGTTGGAAGATCGA
AAATTGTGGTATGTTATAGAGGTCGACTTTTAAGGTCATGCTGCAAAACC
ACCTTTCCTTAGAAAGTTTTCTGTATCTATTCCAAGATTTGAAAAACAAG
TTTCACTTTTAAACAAGCTTAAACCTCGCGGTTTCAGAAAACTGGATCAA
TATCATTTATTTCAAATTCGAATAACTTAACTTAAAAAAATATAAAAACA
CATTCATCACCGAGTCTTTAAATAATGCAAAAGATACACAAAAGAAATAA
TTCGAATCTCATGTTTATATTCCAGGGTATGCCAATGTCAATGCTGTTAA
CTTGGGCAAACGCCACCGTCACCATTTGTCATTCAAGGACGCAAAATCTA
GAAGATATTGTAAGTAGTTATGTGTTTTAATGATTGGCTGTTTTGATGAA
ATTTCCTCAGAAATGAACCGGAGAACGTTATCACAGATCCAGGCTAAAAG
CTGACATTAGGTTCCCATTTTCAGCACTCAGTTTGAAGTTTAATTTGCAT
TTGATCGACGCTTTATTCCCTCTTTGATTTTTCAAAAATATCATACTTTG
TTTTTGCTCATTCTCTGAACAACCTGAATTTGTTCAAAAGGTACGAGAAG
CTGATGTCTTAGTAGCAGCCTGTGGCCGTCCAAAGATGATCAAAGGCTCG
TGGATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCTCTTCCAAGAGTCTGGGTGGTGGTATGTAAAAATTCGTA
AAAATCCTTTTACTACTCATATATGTCTGAGATTTTACTACCGACCCCCC
CCCCTGGTCTGAGTTCGAATAAGCGAGATCTTAAGATATTTTAAATTAAA
TTGAGATTCGTNCACCGAGTCTTTAAATAATGCAAAAGATACACAAAAGA
AATAATTCGAATCTCATGTTTATATTCCAGGGTATGCCAATGTCAATGCT
GTTAACTTGGGCAAACGCCACCGTCACCATTTGTCATTCAAGGACGCAAA
ATCTAGAAGATATTGTAAGTAGTTATGTGTTTTAATGATTGGCTGTTTTG
ATGAAATTTCCTCAGAAATGAACCGGAGAACGTTATCACAGATCCAGGCT
AAAAGCTGACATTAGGTTCCCATTTTCAGCACTCAGTTTGAAGTTTAATT
TGCATTTGATCGACGCTTTATTCCCTCTTTGATTTTTCAAAAATATCATA
CTTTGTTTTTGCTCATTCTCTGAACAACCTGAATTTGTTCAAAAGGTACG
AGAAGCTGATGTCTTAGTAGCAGCCTGTGGCCGTCCAAAGATGATCAAAG
GCTCGTGGATCAAACAAGGAGCGGTTGTTATTGACTGTGGTATTAACTCT
ATTGAAGGTTCGTGTAAAACAGTTTTATTCTGGATTAACAAGTGAGCAAG
TTCTATTGACATTCCGACCATAGATTGATAATACCCGAAGGATTAGATGG
AGTGCTTTAAAGCTCTTCCAAGCAAAACAAAAGTGAATATCGCAAAAAAT
GTTGCTGCTATTGTTTTCGAAAACCTGCGAAGCTTCTGATTGGTAAAGTG
CTGAAATTCTATTGTAATGTCACGTGACTTAGGTAGGATTTCCTACCTAA
CCTCGGCACACTTTTGAGCAAAAGCAAGATATCTAGCCCTTCGAGCTACG
ATTCCGACACTGTGTTGTAGATTAACGCTTTTTGTCTTTAAAAAGAGTCT
GTTAATTAAGACTTTGCTTTAGTTCTTCTAAAATGTGAGTCCTTTTTTCA
TATGGTTACAGGAGAGAATTAGTATAATATCCCAATAAAAATAAGCTTGT
GTTTAAGTTCTTACGTGCTTTTGGGGTATTCATCCAAGTCCTTTTTTTCC
AGATGCATCAAGAAAGAGTGGCAGAAGGTTGGTAGGGGATGTTGACTATG
ATGAAGCCAAGAGGAGAGCATCTTACATCACACCTGTACCCGGAGGTTCG
ATTTTTCATTCATATTACCACAAATTTATTTATTTTCCTACAAAGTGAAT
CGCTATTTCATTAATTAGCTGTTTCATTGCTTTTCTTCAAATGCCCCTCT
TAAGGTTAACATGCAAAAATTAAACTCTCAATATTTTCGTCCCCGTCGTT
GATGATATATTTTCATTGTCTCTTTTCAATTAAAATCAAAGGGAGTTTGT
TTTTGACACTGTTTTTAGTCTTTTATACCCCGCCTTGAAGTACAAAGGTC
AAGAATTTTACACCTGAATCACCATAATACTTCATTAAAGTGATTAAATG
CAATTCTCAAAACATTCTGAGTTGTTTTGATGAATCATGAGATAGCCTTA
GAACATACTAAAAGTTTTTGACCATTTTGAATTTTATTCTAGGTGTTGGT
CCAATGACAGTGTGCATGCTGATGAAGAATACGTTGGAAAGTGCTAAACG
ACATTTGAATCTGCAGGATGAGAAACGTGAAGAAGCTGCTAAATAAAACA
ACCATCCTGAATTCCTTGGGTTTGAATATTTTTTGACGTGGCAAACGAGA
AATCATTTTGATTGCCAGAAATTTATCACTATAATATTGTATTAGATTTT
AGATGTAAATAGTTTGGTTATAATGTTTTATGTTATTTTCATTCCTTTTT
TATATAATATTTAGCTTAATATTAGCTTTTTGAAACAAATTTTCATTATA
GATTCACTAACTAGCTTCAAATTTGATGTTCTCTAAAGAATATGTAGAAA
ATATTTTGTTACAAGCGCAATTGTACAAAGCTCGTTATATATTTGGGTTT
TTGAGCTAAAAACTTAGGCAAAGTTAGATATATCCCCTAGCATCATTAAA
TTTTTATTTTTTCAAGTAGATTCATAGATAGATTTTTCCAAAGTTTTCAC
TAACATGACAGTAATTTTTAATCTAGTGTGATAATTCCAAATATTTTGAT
TTATTATAATTTAATCAACTAAAATATTACAATATGTAAAGTAAATTATA
TTCAACAAAACCACTAAATTTAGTATGACAACTTTTGTGTCTTATGATTT
TTATTTTATAACTTTTTATTATTTTATGTTGAATTTAGAAAAATAGAACC
AAGACTGCTTCTCCTTCATCATTTCAGCTCCTTTTTAACACCCCTGTGTC
AGTGACCTGGTGAGATGCTTTAGGAATGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037580XLOC_037580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059749-exon-scaffold_330-1575043694:546529..546736TCONS_00059749-exon-scaffold_330-1575043694:546529..546736Clytia hemisphaericaexon
TCONS_00059749-exon-scaffold_330-1575043694:545979..546129TCONS_00059749-exon-scaffold_330-1575043694:545979..546129Clytia hemisphaericaexon
TCONS_00059749-exon-scaffold_330-1575043694:545628..545711TCONS_00059749-exon-scaffold_330-1575043694:545628..545711Clytia hemisphaericaexon
TCONS_00059749-exon-scaffold_330-1575043694:544530..544641TCONS_00059749-exon-scaffold_330-1575043694:544530..544641Clytia hemisphaericaexon
TCONS_00059749-exon-scaffold_330-1575043694:543942..544034TCONS_00059749-exon-scaffold_330-1575043694:543942..544034Clytia hemisphaericaexon
TCONS_00059749-exon-scaffold_330-1575043694:542756..543544TCONS_00059749-exon-scaffold_330-1575043694:542756..543544Clytia hemisphaericaexon
TCONS_00059749-exon-scaffold_330-1510915933:546529..546736TCONS_00059749-exon-scaffold_330-1510915933:546529..546736Clytia hemisphaericaexon
TCONS_00059749-exon-scaffold_330-1510915933:545979..546129TCONS_00059749-exon-scaffold_330-1510915933:545979..546129Clytia hemisphaericaexon
TCONS_00059749-exon-scaffold_330-1510915933:545628..545711TCONS_00059749-exon-scaffold_330-1510915933:545628..545711Clytia hemisphaericaexon
TCONS_00059749-exon-scaffold_330-1510915933:544530..544641TCONS_00059749-exon-scaffold_330-1510915933:544530..544641Clytia hemisphaericaexon
TCONS_00059749-exon-scaffold_330-1510915933:543942..544034TCONS_00059749-exon-scaffold_330-1510915933:543942..544034Clytia hemisphaericaexon
TCONS_00059749-exon-scaffold_330-1510915933:542756..543544TCONS_00059749-exon-scaffold_330-1510915933:542756..543544Clytia hemisphaericaexon
TCONS_00059749-exon-scaffold_330-1491911889:546529..546736TCONS_00059749-exon-scaffold_330-1491911889:546529..546736Clytia hemisphaericaexon
TCONS_00059749-exon-scaffold_330-1491911889:545979..546129TCONS_00059749-exon-scaffold_330-1491911889:545979..546129Clytia hemisphaericaexon
TCONS_00059749-exon-scaffold_330-1491911889:545628..545711TCONS_00059749-exon-scaffold_330-1491911889:545628..545711Clytia hemisphaericaexon
TCONS_00059749-exon-scaffold_330-1491911889:544530..544641TCONS_00059749-exon-scaffold_330-1491911889:544530..544641Clytia hemisphaericaexon
TCONS_00059749-exon-scaffold_330-1491911889:543942..544034TCONS_00059749-exon-scaffold_330-1491911889:543942..544034Clytia hemisphaericaexon
TCONS_00059749-exon-scaffold_330-1491911889:542756..543544TCONS_00059749-exon-scaffold_330-1491911889:542756..543544Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:542756..546736 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.17633	4.06827	1.32757	1.56085	99.6207	79.8311	46.01	51.126	65.8645	71.9296	43.0622	31.3821	14.6086	4.90893	7.00164	7.07727	28.143	19.5952	3.31913	5.00725	11.9895	11.6571	19.5967	18.3737	16.2469	24.0775	51.3219	24.19	114.894	65.9686
Blast
[Close]
BLAST of TCONS_00059749 vs. Swiss-Prot (Human)
Match: C1TC (C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo sapiens GN=MTHFD1 PE=1 SV=3)

HSP 1 Score: 263.462 bits (672), Expect = 9.001e-78
Identity = 121/199 (60.80%), Postives = 157/199 (78.89%), Query Frame = 3 
Query:  120 IIVQLPLDTDEEIDTTKVINSVLPTKDVDCLNEVNTGKLAHGDLKG-FLPCTPHGCMTMIEESGIELQGKRAVVVGRSKIVGMPMSMLLTWANATVTICHSRTQNLEDIVREADVLVAACGRPKMIKGSWIKQGAVVIDCGINSIEDASRKSGRRLVGDVDYDEAKRRASYITPVPGGVGPMTVCMLMKNTLESAKRHL 713
             +VQLPLD++  I+T +VIN++ P KDVD L  +N G+LA GDL   F+PCTP GC+ +I+E+G+ + G+ AVVVGRSKIVG PM  LL W NATVT CHS+T +L++ V + D+LV A G+P+M+KG WIK GA+VIDCGIN + D  + +GR++VGDV YDEAK RAS+ITPVPGGVGPMTV MLM++T+ESAKR L
Sbjct:   97 FLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFL 295
The following BLAST results are available for this feature:
BLAST of TCONS_00059749 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
C1TC9.001e-7860.80C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo... [more]
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