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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059728 ID=TCONS_00059728|Name=TCONS_00059728|organism=Clytia hemisphaerica|type=transcript|length=2681bp
GAAATAAAAATGTGAGATGCACAAAgtattatttattttcatatATTTAC
TGTTTCTCATTAATGTAGTGTTTTCATATATTTAGATATAAGATTTATAT
TTACGACAAATGATttctttaatgaaaaaaaagctCAACTTCTGATAAGG
TTTGATGAAGACATTTGAGATTGGACGGTCATTTGTTTCATTCGTTGTTG
ATTGAAGTAATCCCGTGTGTTATTGTGTGGCTTGAACATTATGATAAAGC
ATTTCTTACCATACAGAAAAACTACATAAACGATACAGTTAAAAACAACC
AGCAAACAATGCAAAAATTCTCGATCAgtttttttacgaaaaattcCAAT
TGGAAAACTGACTGCAAGGGTCATCGTAGTCAACATGGTAGCATAAACAA
GAGACATTGCATCATTCATAGGTCCTGGTAAATGTCGTCCACGAAACGCT
TGAACCAAACAAATCAATTGGAAAATAATTAGAAATCCAATAATGAGATT
CATATACATGTAAGTGTTGCTGAAGTTGTGTCGTATCAAGTTGATTTTGT
CCAATTCGAACGATATGTGAGGTTCCTCCATGTCAATGAGAACATATAAG
CCACCATTACTGAACAATATAAACATTATGATTGTGAAGACTTGTACTGC
AACCGTCTTTTTGGCTTCACCTCCTGTCAACTTCACGGTAGAACTGAAAG
CGTCGATcagtttttgtgattttgtatACACAAACCCCATGTTCAGGGTA
TAAAAGAAAGTTAAATTGACACATTTTGCTAAAGAGATGGAAACGAGGAG
CTCATCTTGAATGTAGAGAAGATTGTTCACCAACATGGTAATGACGATAG
TCACCAAGTGGGAATATGAGAAATGAACATCCGATACTTTGACAGTGGGG
GTGTCAcgatattttacaaaaattactAAAGTGGAGAATGTTACAAAGAC
ACCAAACGCTGTTAACAGGATAATGATCATTTTTTCTGCTGCGTTTAATT
TGGAGTATCGATTTGTGTACGGATCGATACATTCTGTTCTCAAGCCATTA
TCGATGCTCTTGATCCCATGACATGGTCTGCAACGCCCATCACCATAGCC
AACTTTGATATGGTCTTCTGGACATAGTTGACACTTCCAACCATGTTTTG
TGTCATAAATTTTCTCTCGTTGGAAAGTTTCACCATAGCTTTTGTAATAA
CCTGGTGTACAATTCAGTTTTGGACATCCTAATGATGCATGATTAAAGTC
TCCTAAAAGCTTTTCAGATGTTGTATAAGCTGAGGTTATTGACCATTTTG
AATCAATATTAACATCGTCTAATAACTCATTTAAAGGAATAGTGTAGTCA
GGGTTTCGCATAAATCTATTTAACCAAAACCCAAACAGTTGCTCTAATTT
GGATAAATTTTGAAGTGACATTTCGCCTTTAAAGAGTTCAAATACATCAT
CCAGAAATTGGATTAATATTTCACTGTACccgattgaaagtaaaacatcC
AAAGAAACTTTTGCAACTTGTTTTGAATACATAAAAGAGAATTCTTTACG
TTGTAGATTCTCCATACTAAACCAATAACCTGGATTCTGAAGATTGTATG
TTCTTGAGCTTCGACGAAGATCATGGGCCAAGATGAAAGTGTTATTGTAT
TTGCCACCGAAATTGTCCAAGAAATGAATAACATCTTGTTGGTGTGTTTG
ATATGAACCAAACAGGATTAAAGCTGATTCTCTTCGCCGCCAAGAATCCA
AATGAGGAAAAATATCTTCTGCAAAAGACACATTATTGACATCAACGGAT
TTTCTTTGCAGACAATACTCCTTGGTAGCAGCAAATAAATTATAACTGTT
GATAAAATATTCTTCAGATGGTGTCGGGTGATCTTCATAAAAAGAGAGCA
TTGTTAGATTTTTCCAATTTAGTTTTCGAGTGACATGAAGTAAGTATTTA
GAGTAATCATCAACTGTTTCAAACCTGTATTTATCATCGCAGCTGGTTGG
TAGACACATCTTTGGATACCACGTAAAGCTTAGCAATCTACTGACTAGGT
TCAACATAAAGTCATTTTGCATGTACGAAGACAAAATTACAATGTCTGGT
TGAGAACAGTTTCTTCCTGCCTCACATGGCACGTGATATCTCTCGCTTAA
GAGAATTTCGATTAATGTTTCAACTAAATGATCCGTGTTGTTGCACTCGA
TATGATAAGAATGACGTTCGAAATCAGAATGCTTGAATATTTTAGTTTTC
TTCACCACGTCCTCGATGGCTTGTTTAATCATGGTATCTGTCGCCAAAGG
TAGATTGTCAATATCTGTAGATGTAGAACAATTGGAATATATACCAATTG
AACGAAAAGATAATTGCTGCTTCTCCGAGAAGACGAAGCTAGCCAGCATT
ACGAGGTAGATTAAAATGGTAATTTCCATGtggagtttttttgtttttga
ttgctCACGAAAGCAATAATTTATCTTCTTTATTTATGTTCTGTTCGCCT
CAAATCCATTACCTCATCCCTTTGATCCTTTGCGTAAGCATAAATTGGAT
ACTTCCAAATTGGGCTTTACACTATAGTCAGTTTCCTCTTACATTAGAAT
TTTACCTTTTGctaactttcttccaagaattttgGGAAGTAGAAATAGTT
TATTCAATTCACCTGTCTTTTATCTAATAGG Run BLAST on NCBI transcript from alignment at scaffold_330:288923..292678- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059728 ID=TCONS_00059728|Name=TCONS_00059728|organism=Clytia hemisphaerica|type=transcript|length=3756bp|location=Sequence derived from alignment at scaffold_330:288923..292678- (Clytia hemisphaerica)
GAAATAAAAATGTGAGATGCACAAAGTATTATTTATTTTCATATATTTAC
TGTTTCTCATTAATGTAGTGTTTTCATATATTTAGATATAAGATTTATAT
TTACGACAAATGATTTCTTTAATGAAAAAAAAGCTCAACTTCTGATAAGG
TTTGATGAAGACATTTGAGATTGGACGGTCATTTGTTTCATTCGTTGTTG
ATTGAAGTAATCCCGTGTGTTATTGTGTGGCTTGAACATTATGATAAAGC
ATTTCTTACCATACAGAAAAACTACATAAACGATACAGTTAAAAACAACC
AGCAAACAATGCAAAAATTCTCGATCAGTTTTTTTACGAAAAATTCCAAT
TGGAAAACTGACTGCAAGGGTCATCGTAGTCAACATGGTAGCATAAACAA
GAGACATTGCATCATTCATAGGTCCTGGTAAATGTCGTCCACGAAACGCT
TGAACCAAACAAATCAATTGGAAAATAATTAGAAATCCAATAATGAGATT
CATATACATGTAAGTGTTGCTGAAGTTGTGTCGTATCAAGTTGATTTTGT
CCAATTCGAACGATATGTGAGGCTCCTCCATATCAATGAGAACATATAAG
CCACCATTACTGAACAATATAAACATTATGATTGTGAAGACTTGTACAGC
AACCGTCTTTTTGGCTTCACCTCCTGTCAACTTCACGGTAGAACTGAAAG
CGTCGATCAGTTTTTGTGATTTCGTATACACAAACCCCATGTTCAGGGTA
TAAAAGAAAGTTAAATTGACACATTTTGCTAAAGAGATGGAAACGAGGAG
TTCATCTTGAATGTAGAGAAGGTTGTTCACCAACATGGTAATGGCGATAG
TCACCAGGTGGGAATATGAGAAATGAACATCCGATACTTTGACAGTGGGG
GTGTCACGATATTTCACAAAAATCAACAAAGTGGAAAATGTTACAAAGAC
ACCAAACACTGTTAAGGAAATAATGATCATTTTTTCTGCTGCGTTTAATT
TGGAGTATCGATTTGTGTATGGATCGATACATTCTGTTCTCAAGCCATTA
TCAATGCTCTTGATCCCATAACATGTTTTGCAATGGCCATCACCATACCC
AACTTTGATATGGTCTTCTGGACATAGTTGACACTTCCAATCATGTTTTG
TGTCAAAGATTTTCTCTCGTTGGAAAATTTCACCATAGCTTTTGTAATAA
CCTGGTGTACAATTCAGTTTTGGACATCCTAATGATGCATGATTAAAGTC
TCCTAAAAGCTTTTCAGATGTTGTATAAGCTGAGGTTATCGACCATTTTG
AATTCATATTAACATCGTTTAATAACTCATTTAAAGGAATAGTGTAGTCA
GGGTTTCGCATAAATCTATTTAACCAAAACCCAAACAGTTGCTCTAATTT
GGATAAATTTTGAAGTGACATTTCGCCTTTAAAGAGTTCAAATACATCAT
CCAGAAATTGGATTAATATTTCACTGTACCCGATTGAAAGTAAAACATCC
AAGGAAACTTTTGCAACTTGTGTTGAATACATAAAAGTGAATTCTTTACG
TTGTAGNAAATCCAATAATGAGATTCATATACATGTAAGTGTTGCTGAAG
TTGTGTCGTATCATGTTGATTTTGTCCAATTCAAACGATATGTGAGGTTC
CTCCATGTCAATGAGAACATATAAGCCACCATTACTGAACAATATAAACA
TTATGATTGTGAAGACTTGTACTGCAACCGTCTTTTTGGCTTCACCTCCT
GTCAACTTCACGGTAGAACTGAAAGCGTCGATCAGTTTTTGTGATTTTGT
ATACACAAACCCCATGTTCAGGGTATAAAAGAAAGTTAAATTGACACATT
TTGCTAAAGAGATGGAAACGAGGAGCTCATCTTGAATGTAGAGAAGATTG
TTCACCAACATGGTAATGACGATAGTCACCAAGTGGGAATATGAGAAATG
AACATCCGATACTTTGACAGTGGGGGTGTCACGATATTTTACAAAAATTA
CTAAAGTGGAGAATGTTACAAAGACACCAAACGCTGTTAACAGGATAATG
ATCATTTTTTCTGCTGCGTTTAATTTGGAGTATCGATTTGTGTACGGATC
GATACATTCTGTTCTCAAGCCATTATCGATGCTCTTGATCCCATGACATG
GTCTGCAACGCCCATCACCATAGCCAACTTTGATATGGTCTTCTGGACAT
AGTTGACACTTCCAACCATGTTTTGTGTCATAAATTTTCTCTCGTTGGAA
AGTTTCACCATAGCTTTTGTAATAACCTGGTGTACAATTCAGTTTTGGAC
ATCCTAATGATGCATGATTAAAGTCTCCTAAAAGCTTTTCAGATGTTGTA
TAAGCTGAGGTTATTGACCATTTTGAATCAATATTAACATCGTCTAATAA
CTCATTTAAAGGAATAGTGTAGTCAGGGTTTCGCATAAATCTATTTAACC
AAAACCCAAACAGTTGCTCTAATTTGGATAAATTTTGAAGTGACATTTCG
CCTTTAAAGAGTTCAAATACATCATCCAGAAATTGGATTAATATTTCACT
GTACCCGATTGAAAGTAAAACATCCAAAGAAACTTTTGCAACTTGTTTTG
AATACATAAAAGAGAATTCTTTACGTTGTAGATTCTCCATACTAAACCAA
TAACCTGGATTCTGAAGATTGTATGTTCTTGAGCTTCGACGAAGATCATG
GGCCAAGATGAAAGTGTTATTGTATTTGCCACCGAAATTGTCCAAGAAAT
GAATAACATCTTGTTGGTGTGTTTGATATGAACCAAACAGGATTAAAGCT
GATTCTCTTCGCCGCCAAGAATCCAAATGAGGAAAAATATCTTCTGCAAA
AGACACATTATTGACATCAACGGATTTTCTTTGCAGACAATACTCCTTGG
TAGCAGCAAATAAATTATAACTGTTGATAAAATATTCTTCAGATGGTGTC
GGGTGATCTTCATAAAAAGAGAGCATTGTTAGATTTTTCCAATTTAGTTT
TCGAGTGACATGAAGTAAGTATTTAGAGTAATCATCAACTGTTTCAAACC
TGTATTTATCATCGCAGCTGGTTGGTAGACACATCTTTGGATACCACGTA
AAGCTTAGCAATCTACTGACTAGGTTCAACATAAAGTCATTTTGCATGTA
CGAAGACAAAATTACAATGTCTGGTTGAGAACAGTTTCTTCCTGCCTCAC
ATGGCACGTGATATCTCTCGCTTAAGAGAATTTCGATTAATGTTTCAACT
AAATGATCCGTGTTGTTGCACTCGATATGATAAGAATGACGTTCGAAATC
AGAATGCTTGAATATTTTAGTTTTCTTCACCACGTCCTCGATGGCTTGTT
TAATCATGGTATCTGTCGCCAAAGGTAGATTGTCAATATCTGTAGATGTA
GAACAATTGGAATATATACCAATTGAACGAAAAGATAATTGCTGCTTCTC
CGAGAAGACGAAGCTAGCCAGCATTACGAGGTAGATTAAAATGGTAATTT
CCATGTGGAGTTTTTTTGTTTTTGATTGCTCACGAAAGCAATAATTTATC
TTCTTTATTTATGTTCTGTTCGCCTCAAATCCATTACCTCATCCCTTTGA
TCCTTTGCGTAAGCATAAATTGGATACTTCCAAATTGGGCTTTACACTAT
AGTCAGTTTCCTCTTACATTAGAATTTTACCTTTTGCTAACTTTCTTCCA
AGAATTTTGGGAAGTAGAAATAGTTTATTCAATTCACCTGTCTTTTATCT
AATAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059728-exon-scaffold_330-1575043694:292108..292678 | TCONS_00059728-exon-scaffold_330-1575043694:292108..292678 | Clytia hemisphaerica | exon |
| TCONS_00059728-exon-scaffold_330-1575043694:288923..291032 | TCONS_00059728-exon-scaffold_330-1575043694:288923..291032 | Clytia hemisphaerica | exon |
| TCONS_00059728-exon-scaffold_330-1510915933:292108..292678 | TCONS_00059728-exon-scaffold_330-1510915933:292108..292678 | Clytia hemisphaerica | exon |
| TCONS_00059728-exon-scaffold_330-1510915933:288923..291032 | TCONS_00059728-exon-scaffold_330-1510915933:288923..291032 | Clytia hemisphaerica | exon |
| TCONS_00059728-exon-scaffold_330-1491911889:292108..292678 | TCONS_00059728-exon-scaffold_330-1491911889:292108..292678 | Clytia hemisphaerica | exon |
| TCONS_00059728-exon-scaffold_330-1491911889:288923..291032 | TCONS_00059728-exon-scaffold_330-1491911889:288923..291032 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_330 | supercontig | scaffold_330:288923..292678 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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