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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059716 ID=TCONS_00059716|Name=TCONS_00059716|organism=Clytia hemisphaerica|type=transcript|length=2199bp
cgcggtttcgcaaaattccgtaatgtaaaccttccagataaCCTGATTTT
AGGCTATATTAACCgtattttgggttttcagaagaaCAAtatccaacccc
ccggcaattagggccccctccccgtttatttggaacgtAAGAGTACGAGA
ATGCCCTGTAATAATCAAGCACAAAGGAAGTtagcaaaataaataaaaat
tttacattgtaaaaaaaatttgaatcctACAGTTCATCTCGATCAAACCC
TCAAAATATGGAACGTGAGAAAATCTGAGAACACTTTTTTAAGCAATCAT
GGCTCGAGGGTCCTGAAGTCAGCCAAATGAATTTCACCATCTcgtaaaaa
agaaacttttttagaaaaaatctaaCTAATGAAGAAGCTAACTATCGCCC
TTGGCCTAATAATCTTTATTATGGTATACTATAGGGGGTCGTTATGGGAA
ATTTCTCAGAGATTGACCTAGCAATTTAAGCCCTGAGCCATAAATCTGGG
TTGCTAATAAAAATTTGTAATAATTTGTGAAacctaaaatcttaaaaaac
taaaacacCAAAGGTAGTTCTTAATATCATCTTTCGTCTAGTCTTCTAAA
AAGTCCGCTCAAGCTGCGGCGTCGAAGCGGAATGTGAGCGATGGGGTTGA
TGTTGAGGCGTCAGTTGTGGTTGCGATAATTTCAATGATTGATGTAGCTG
ATCGATTCCCTCTTCTTCATCTATTTCGTTCAGTTCTTGGTAAGCCCGCG
TGTAAATTTCGAGCGCTTTCGCGTAAAACATCATCTCGCTCAACATAAAT
TCACCAAACACTTTCTTCAAATCTCGAGTTTTCTGTCTTTCGAAATCGGA
AATTTGATCTTTCAAAGTGTTGGCGGACCGGTTCGCTTCTTCGGCAGCTT
TTTTGAATTTCGTTTCAGCTTTTGCGAGTTCAAATTGTTGTGTGCTTTTG
gatttgacattttcaaaggaTTTGTGTTCCCTGACTTCCTTTGTGTGGGC
TGTGTTGTGTTGTTTGACATCCACACGCGCTTGTTTACATCGCGTTTCAT
ACACAGCGAATCCTTGAACAACACGATTCTCTAAACGTGTTACAAGCGCG
TTTCGGTGATCTTGAACCGCGGCAAAACATTCAGCAAACGCGCCTAATCC
TTGTTGCAATGCAGGGACTTCTGTGCCCGCGTATTGGCGCAATGATTTCG
AGAATTGATCGCCAGCATCGCGGAGTTTTGCAGATCGAACAGTGTANTaa
tgatttagagaattgatCGCCAGCATCGCGGAGTTTCGCAGATCGAACAG
TGTAGAGGTTGATGTCTTGTACCATCTGCGGAAAATGGTTTTCGATCTTT
TCGATGTTCTCCGTTACAAATTTATTCTTCTGCTCTCCTGAACGAATCGA
TGTCTTCAAATCCCCTGTAAAGATAAAGAAGATTTGTGATAGAAAGCAGA
TTTCTTTCAGCGTTAGACCCAAGTAAACGTCAAAAATCTTTCCCTGCTGG
CAAAAAAACTTGAAGTTATTCTTATCTAAATCAAAATACCCATCTATTCC
TTCTTTCTATCTcgtagagagagagagaaggAGAGGACGAAGAAGCAGAT
AACAAATTTAAACATTTTGCAGAGAAGGTGAAGAGGTAGACGTGTACACA
TGATATAATCTTCATCTTTGTTTTCATCGTCACGACGTAGAAGATCATCA
ACAGTTTTTTCGACAGTTTTATCATCCTTAATCAGTTCATTTCGGTTGGG
TAAATCATTGTTATTATTCCTCTCCCCCTCTTCTTCAGCGTCACGTTCAT
GATTTTCGAGTTCAGACACTTCTTTATAATAATCTTCATCGATCTCTGGA
GAGGAGATCATCTCTCTCGCTTTTCCAACATATTCCTTCTCAACCTCTTC
CATCGCAAGTCAAATCCACAAAAGATCTCACTCAATCAACCAAGCTTCAT
AAAATGtttcaatggcGATAATATTACATTAAGAAAAGCCTcttctttca
ctttttcacattcACGAAAAAGTGTAAAAACGCATGAAACGCTGCAGTTC
ATATAATGAATTATTTAGCCTATACTCTAATGTAGCTACAAAAGAAAACT
CTAAATTTGCATGCCCAGGCTAATAAATTATTCAACTTTATATGGCTGTT
GAGAAATATAAGATGGAATCCATTACTACTGTGTCAGGCTAGTATCAAC Run BLAST on NCBI transcript from alignment at scaffold_330:37331..39854- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059716 ID=TCONS_00059716|Name=TCONS_00059716|organism=Clytia hemisphaerica|type=transcript|length=2524bp|location=Sequence derived from alignment at scaffold_330:37331..39854- (Clytia hemisphaerica)
CGCGGTTTCGCAAAATTCCGTAATGTAAACCTTCCAGATAACCTGATTTT
AGGCTATATTAACCGTATTTTGGGTTTTCAGAAGAACAATATCCAACCCC
CCGGCAATTAGGGCCCCCTCCCCGTTTATTTGGAACGTAAGAGTACGAGA
ATGCCCTGTAATAATCAAGCACAAAGGAAGTTAGCAAAATAAATAAAAAT
TTTACATTGTAAAAAAAATTTGAATCCTACAGTTCATCTCGATCAAACCC
TCAAAATATGGAACGTGAGAAAATCTGAGAACACTTTTTTAAGCAATCAT
GGCTCGAGGGTCCTGAAGTCAGCCAAATGAATTTCACCATCTCGTAAAAA
AGAAACTTTTTTAGAAAAAATCTAACTAATGAAGAAGCTAACTATCGCCC
TTGGCCTAATAATCTTTATTATGGTATACTATAGGGGGTCGTTATGGGAA
ATTTCTCAGAGATTGACCTAGCAATTTAAGCCCTGAGCCATAAATCTGGG
TTGCTAATAAAAATTTGTAATAATTTGTGAAACCTAAAATCTTAAAAAAC
TAAAACACCAAAGGTAGTTCTTAATATCATCTTTCGTCTAGTCTTCTAAA
AAGTCCGCTCAAGCTGCGGCGTCGAAGCGGAATGTGAGCGATGGGGTTGA
TGTTGAGGCGTGGCTAGGGTGGGGGCGGATCCGCCATACATATAACCTCC
GCCACCACCACCAGGCGTCAGTTGTGGTTGCGATAATTTCAATGATTGAT
GTAGCTGATCGATTCCCTCTTCTTCATCTATTTCGTTCAGTTCTTGGTAA
GCCCGCGTGTAAATTTCGAGCGCTTTCGCGTAAAACATCATCTCGCTCAA
CATAAATTCACCAAACACTTTCTTCAAATCTCGAGTTTTCTGTCTTTCGA
AATCGGAAATTTGATCTTTCAAAGTGTTGGCGGACCGGTTCGCTTCTTCG
GCAGCTTTTTTGAATTTCGTTTCAGCTTTTGCGAGTTCAAATTGTTGTGT
GCTTTTGGATTTGACATTTTCAAAGGATTTGTGTTCCCTGACTTCCTTTG
TGTGGGCTGTGTTGTGTTGTTTGACATCCACACGCGCTTGTTTACATCGC
GTTTCATACACAGCGAATCCTTGAACAACACGATTCTCTAAACGTGTTAC
AAGCGCGTTTCGGTGATCTTGAACCGCGGCAAAACATTCAGCAAACGCGC
CTAATCCTTGTTGCAATGCAGGGACTTCTGTGCCCGCGTATTGGCGCAAT
GATTTCGAGAATTGATCGCCAGCATCGCGGAGTTTTGCAGATCGAACAGT
GTANTAATGATTTAGAGAATTGATCGCCAGCATCGCGGAGTTTCGCAGAT
CGAACAGTGTAGAGGTTGATGTCTTGTACCATCTGCGGAAAATGGTTTTC
GATCTTTTCGATGTTCTCCGTTACAAATTTATTCTTCTGCTCTCCTGAAC
GAATCGATGTCTTCAAATCCCCTGTAAAGATAAAGAAGATTTGTGATAGA
AAGCAGATTTCTTTCAGCGTTAGACCCAAGTAAACGTCAAAAATCTTTCC
CTGCTGGCAAAAAAACTTGAAGTTATTCTTATCTAAATCAAAATACCCAT
CTATTCCTTCTTTCTATCTCGTAGAGAGAGAGAGAAGGAGAGGACGAAGA
AGCAGATAACAAATTTAAACATTTTGCAGAGAAGGTGAAGAGGTAGACGT
GTACACATGATATAATCTTCATCTTTGTTTTCATCGTCACGACGTAGAAG
ATCATCAACAGTTTTTTCGACAGTTTTATCATCCTTAATCAGTTCATTTC
GGTTGGGTAAATCATTGTTATTATTCCTCTCCCCCTCTTCTTCAGCGTCA
CGTTCATGATTTTCGAGTTCAGACACTTCTTTATAATAATCTTCATCGAT
CTCTGGAGAGGAGATCATCTCTCTCGCTTTTCCAACATATTCCTTCTCAA
CCTCTTCCATCGCAAGTCAAATCCACAAAAGATCTCACTCAATCAACCAA
GCTTCATAAAATGTTTCAATGGGCTTTTCCAGAAAAAATTCCTTCATGGG
GGGTGGAGGATATATTATTTTTTCTGTGATCTACCCCTGGACATTTCGAT
TTTTCACCCCCTGGACACGTGTTTTACCCCTGGACAAGCATCAAGTTGAC
TCCCTGGACACAAATATTTACCCCTGGACATCGCAGATTTACCCCATGGG
CATGGCAGTTTTTCAGGGTTTTTTCCAATACCCCTGGACAATATATCCTC
CACCCCCCATGAATGGTTTTTTTCTGGAAGAGCCCAATAGCGATAATATT
ACATTAAGAAAAGCCTCTTCTTTCACTTTTTCACATTCACGAAAAAGTGT
AAAAACGCATGAAACGCTGCAGTTCATATAATGAATTATTTAGCCTATAC
TCTAATGTAGCTACAAAAGAAAACTCTAAATTTGCATGCCCAGGCTAATA
AATTATTCAACTTTATATGGCTGTTGAGAAATATAAGATGGAATCCATTA
CTACTGTGTCAGGCTAGTATCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059716-exon-scaffold_330-1575043694:39198..39854 | TCONS_00059716-exon-scaffold_330-1575043694:39198..39854 | Clytia hemisphaerica | exon |
| TCONS_00059716-exon-scaffold_330-1575043694:37833..39140 | TCONS_00059716-exon-scaffold_330-1575043694:37833..39140 | Clytia hemisphaerica | exon |
| TCONS_00059716-exon-scaffold_330-1575043694:37331..37564 | TCONS_00059716-exon-scaffold_330-1575043694:37331..37564 | Clytia hemisphaerica | exon |
| TCONS_00059716-exon-scaffold_330-1510915933:39198..39854 | TCONS_00059716-exon-scaffold_330-1510915933:39198..39854 | Clytia hemisphaerica | exon |
| TCONS_00059716-exon-scaffold_330-1510915933:37833..39140 | TCONS_00059716-exon-scaffold_330-1510915933:37833..39140 | Clytia hemisphaerica | exon |
| TCONS_00059716-exon-scaffold_330-1510915933:37331..37564 | TCONS_00059716-exon-scaffold_330-1510915933:37331..37564 | Clytia hemisphaerica | exon |
| TCONS_00059716-exon-scaffold_330-1491911889:39198..39854 | TCONS_00059716-exon-scaffold_330-1491911889:39198..39854 | Clytia hemisphaerica | exon |
| TCONS_00059716-exon-scaffold_330-1491911889:37833..39140 | TCONS_00059716-exon-scaffold_330-1491911889:37833..39140 | Clytia hemisphaerica | exon |
| TCONS_00059716-exon-scaffold_330-1491911889:37331..37564 | TCONS_00059716-exon-scaffold_330-1491911889:37331..37564 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_330 | supercontig | scaffold_330:37331..39854 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00059716 vs. Swiss-Prot (Human)
Match: FA92A (Protein FAM92A OS=Homo sapiens GN=FAM92A PE=1 SV=2) HSP 1 Score: 126.716 bits (317), Expect = 7.935e-32 Identity = 75/189 (39.68%), Postives = 119/189 (62.96%), Query Frame = -3
Query: 683 YTVRSAKLRDAGDQFSKSLRQYAGTEVPALQQGLGAFAECFAAVQDHRNALVTRLENRVVQGFAVYETRCKQARVDVKQHNTAHTKEVREHKSFENVKSKS-TQQFXXXXXXXXXXXXXXXANRSANTLKDQISDFERQKTRDLKKVFGEFMLSEMMFYAKALEIYTRAYQELNEIDEEEGIDQLHQSL 1246
Y ++A+LRD D + YA TE P L+ GL FA+ FA +QD+R A V RLE +VV+ Y T K R D+K TA +E ++ E + ++ + + +++AET+ ++AA +A+R++ L++ I++FERQK +D+K +F EF+ EM+F+ KALE+YT AYQ + IDE+E ++ SL
Sbjct: 37 YVRKTARLRDKADLLVNEINAYAATETPHLKLGLMNFADEFAKLQDYRQAEVERLEAKVVEPLKTYGTIVKMKRDDLKATLTARNREAKQLTQLERTRQRNPSDRHVISQAETELQRAAMDASRTSRHLEETINNFERQKMKDIKTIFSEFITIEMLFHGKALEVYTAAYQNIQNIDEDEDLEVFRNSL 225
The following BLAST results are available for this feature:
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