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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059714 ID=TCONS_00059714|Name=TCONS_00059714|organism=Clytia hemisphaerica|type=transcript|length=1484bp
AGGAAGTCTTAACTAAATACCTAAAATGCTGCATTTAAAGAGTCCAACAT
TTAATCGTAGTGACAAGTTTGTTAACGCAAAGGATTTATTTGTTTTAACC
GTTTGCACGAGAGAGTGAACCTTAGATGGTTCAAAGTCATTATAGAGTTA
TAGACGAGGAAGGAAGCTTGGTCAAGTTTTCAAACCAGGACATTTGAGAA
GAAGGAAAGCTCTAAATTTAAATGGTATTGTTgtgttttcgttttttttt
cgaacTTAATCATTTTCTTGAACAATGGTTATCAACAGTAAAAGCAAAAT
CATAACAAAAGTCAACATTCGAAAAgccaaacaacaaaaacaagcgGCAG
ATAAAATGATCGAGAAAAATCGACCGTTACTTATCAGGGCGTATTCCGCT
GAATCAAGCGGTGGTTATTCTTACGGGAAACGTAATAATGTATACGGAAC
AGCTCATTTGGAGTCATCCcgtaaagaaaagaaagtgGTACAGTTTTGTA
TGAGATATTTGAGCATGGCGATATGGGGAATACCAACTATGCAAGATACT
CAAGGACTTCAAGCGATTCCTGAACGGCCCGAAAGTGTCATCGAAGATCA
GAACAACAACATCCTCAACAGCGACCATCTTCAGAAAGCCAACAAAAGGA
AATTGCAAAAATCATATAATCCTGTAACCAACATGGCGTCACAACCACAA
GACCATGAGTGCACatattgtttaaaaatcttcCAAAGTAAAGCCACACT
GGATATCCATTTGATGACGAAAAGACACGATTGGCAATTAAAGAAAGCTA
TCGAGAACATGGATTCCATAAATAATGAAGTGACAACTGAGGACGACTTC
GCCAAACATTATTTGACGAGTGGAAGGAATGAAACCCAACAAGAACATTC
TCCAACTCTTTGTAAAGAAGGTCGTTATTCAAACGGCTCACTCGTTTCAA
GCGAAGAAGGATATTACAGTACGGATAGNTTCTCCAACTATTTGTAAAGA
AGGTCGTTATTCAAACGGCTCACTCGTTTCAAGCGAAGAAGGATATTACA
GTACGGATAGCGATGAAACGAAACACATGAACACTTACTCTACGACCACC
GCCAACGGGCCCACGTGTCAACGGCGTGGCGGTGTCATAGCTAACGGGGC
GGTTGATATGGCGTCATATAAGCAACGCCCATCTGTGATACGGCTAAAAC
GTATGAAAATGGAGGAGCTTAAAGAGATATATAAACAGTATGCTGCTTCG
AGAGGCTCTGGGGATTTATATAAAAACTTACTAGACACTTATGTGGATTT
CAATTTCTATCCGGACGCTGAGAATCGTCAGTTTTCGGACAGTGAGGTAG
TTAACGTTTCAGCAAAGTCGAATCGAAAATATAGCGTTTCGGAGAAAGAG
GCGCTGATGCGAAGAGATTTGGTTTTGACGGAGATGGCGGATACGGAGAA
GAATTACGTAGACGACCTCGCGTTCATTATTAAC Run BLAST on NCBI transcript from alignment at scaffold_330:504761..512205+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059714 ID=TCONS_00059714|Name=TCONS_00059714|organism=Clytia hemisphaerica|type=transcript|length=7445bp|location=Sequence derived from alignment at scaffold_330:504761..512205+ (Clytia hemisphaerica)
AGGAAGTCTTAACTAAATACCTAAAATGCTGCATTTAAAGAGTCCAACAT
TTAATCGTAGTGACAAGTTTGTTAACGCAAAGGATTTATTTGTTTTAACC
GTTTGCACGAGAGAGTGAACCTTAGATGGTTCAAAGTCATTATAGAGTTA
TAGACGAGGAAGGAAGCTTGGTCAAGTTTTCAAACCAGGACATTTGAGAA
GAAGGAAAGCTCTAAATTTAAATGGTATTGTTgtgttttcgttttttttt
cgaacTTAATCATTTTCTTGAACAATGGTTATCAACAGTAAAAGCAAAAT
CATAACAAAAGTCAACATTCGAAAAgccaaacaacaaaaacaagcgGCAG
ATAAAATGATCGAGAAAAATCGACCGTTACTTATCAGGGCGTATTCCGCT
GAATCAAGCGGTGGTTATTCTTACGGGAAACGTAATAATGTATACGGAAC
AGCTCATTTGGAGTCATCCcgtaaagaaaagaaagtgGTACAGTTTTGTA
TGAGATATTTGAGCATGGCGATATGGGGAATACCAACTATGCAAGATACT
CAAGGACTTCAAGGTAATGTATAGTCATATCGATCTGGGCGGGCGGTCTG
AAGGGCGTTATTGGTTGCGTATTTCCATGATTGCCTTTTACACAATATAC
AAGGACCATTTTAGTTAACACGATTTTCTTTGGTTCCCTTAAACCTCAGT
CAATGCTTCATGCTcatattgaaatttgaaatcagaaaaactaattttct
atttttcatccTGTGGATGCATGGATATTTCTGTTATTCTTTTAATTACT
TAATTACTCGTACATTTTGGGAAAGGGGCCGTCTCCCCACTAAATGAAAA
TTCAGcaccattgatgacgtcatcgcccGCTAATAGCGACGTTAAGCACG
GGTTTAATTGAACCATAAAGTGCGATACTGtataggcctgtacataactt
gccaaagcaaatcatgcaagtgaaatcttatgtacaggcctacgataTCG
CATTGAACGGTCTAAATAAACACCTGCTTAACATCACTGATAACAAACCA
GCGTTCAGGAacgaatttcagtcaaatcgaacGAGCCATCGGTCAGTACT
ATGTGATTTTAGCCAAACTCAAATTTTGAACTATCTGAACTTACTCGAAC
Ttgtggaaattttcaaaaatttgtgagaagttcgattagttcgattagtt
cgaggagttcgattagttccaTTGAAAAAATGTTCGGGAAGctcaaattt
tcctattttatGAGATGGTACGCCATGGTTGAATTAGAATTGgcagattt
tcaattttcaaacttactCGAACTTTACTCGTACTTTTAACATACTAAGG
TATCCAAAGTTCGGCTAATTACTCGAACTTCCTCGAacttatatttttga
aaaattgcgaGGAGTTCGAGTAATTTGTTTACTCGAGACCATGGCCTGTC
GAAACTTTACTTATTCGAGTAAGTTCGAGTAAAAAAGTGGTTCGGAAAGT
TCGAGTAATGGGCTCAGATATATTGTTGTATGGATATGGAACTAATCTTC
CACCCCTTCGCTTGTAGTATCTCCTAATTTGAAGTTAAGATATGCTCTAC
ATAACGTTCTTTTGAAACAGCCTTACTTTAGACCTTAAACAATTTTGAAT
CAGgtcttaaatttattttttttaaagatcttaTAAAACAAATACTCTAC
TCATAACACAGGATAAAGATTTATAGTTTATCTGCTCTGAGGCAAATTAA
CGGATTATGATTACAAGAGTGATTCTACCCCCGGGTAGATTTTTAACATT
GAAATTTAGTGGTAGGAAACAGAGTTTAGCTTTGAATCATAATCCAAGTG
CTAAAAAGCTATATATGGTTTGCATTTTGGAacgataatttttcgaaatc
caatTTCTAAAAACAGAGTTGAAAAATGGATTATGGCGACTTAAACAGTA
AGAATAAATGGCGTGAGTTAAAAAAGGACCTCCTTTGAATTTTTGAACAG
TAGTCAATGGTTTTATCAGTGCCGTGATAATTGAATTTTATGAATGACTT
GTTAATTTTCTTCTCCATACACATTATAGATTTTTTGAGGTGATGCTATC
GTCCAAATATTGCACGACCTACCGTATTTACGTGACGTTCCGTTAGAGTA
TGTTTACTTGATTGATATTTATCATTCTTACGGCTAACTAATCAAAAGTT
CGCTTAtattcaaatgtaaacatttccaaattaccgaatattttgagata
taaacCAAGCTGGCTGCTAATAAAAACGTTCAACAAAACCCTTCCAAATT
ATGTGCCAGCTTGGTTTTAACTCATTTCAAAGTGGCACAATCGGTATTCT
TTGAGATTTTGGCGCCTTTGAATGTTGAGTGAATGTTAGCCGTAAATACA
GTAAATGTCAACCAGGTAGATCTATATCGACATGTCGACATATTTAAAAA
CGGCTCCTTAAGCATGGGGAAACATGGAACTGGATACAGGGGTTTCAATT
AAATGATTGACATCTTTTACCTGTATAGGAGGGCATTTGTTTACAAACTC
CAAGGGTCTCAAAAACCCTAGAAAGACGTAGAGTCGtggttttgaaaaaa
gatttttcgaaaatcggcaATAAGACTAAAAGAAAGAAGGCTTTTTGACA
AGCAGTCATtctgtttgaaaaaaatagaaaattataaaaaatggaAATGT
CTATCCGGCTTTtacgaatttgaaatttaaaaattttctatcATACGGTG
AGGGAATACAAGCAAATGAGGCGTTGACTGGGAAAGTATTTACCCTTTTT
GAACCAAATATCTAGGCAAGAAATATCGCCCTACACAAATTTGATCATGA
ATCTTTCATGGTTGTTTTCTCAATTATCatattttattttcctttttata
aATCCCTTTGTCTCTATCCCTGTCTATTCAACAAAAGGGACCCGAaaatt
tctatctttttttGCCAATCAGACCTGTTTCCTTTATTTTTTGAGAAGGA
TGAAagtcagaaagaagaaaagtgtGGTTGACCTGCACTTCCATATCCCA
CGTTTGTCTTATGAAATCTCTCTTCACTTTTTCACCTTGAAAATAGGCGA
CGAGTGAAACATTTTTGACAATCAAAGATAAGATATACAGATAAAATGAT
AGGTCTACAAATGAAAGGTGAGACACGATAAACTTTGAAGGAAGTTTAGA
TCTTGTGAAACTAAATTGGGAGacgataattacaaggtctcaaaagaagg
ttgtctattgctcattccgacatcgactattaacctgactgaaattcgag
ccgttactagcaaccctgcggggcccaaggcgccgagtatgcacccggca
cagtgacaagccgttactaggctgcttgcatcctctaacgaattcgtgct
tcttttagaggatgcttaatagtCGGTAGATCCTCtttccagagatttgc
cgctcttagccgtatatcggctaaagacAGTTTTTAGCTGGCGAGAGGTT
AGAAANTACTGTTAcctaatcaattccaaacaacaaaacccccggaaaat
ttaaaatgtcggaatgagcagtagacaaccttcttttgagaccttgtaat
tatacTTTCCCAACTAAATTCCTATCTTCAAAGGTTGTTTCTAAAAACAA
ATTGTAGTGGTATACTCTCGAATTCCTAATAAAATTACAGTAACGAATAA
ACATATAGGGTTAAACATGTGGTAACCATGATACAATTCGACCGCGTGAA
GGCATAAAAATCTGATTGAAGGGTCTTTTCAGGTTAGTTTAGGGGGTAAA
TAAAGGGTATTCTGCTTTCATTTGATGAATAGATAAAACCTCCATAGTCA
AAGATAGGTATTTAGCCTCAGAAACACAAGTAGGGACTTGAAATTGAGga
aaatctttgtcaaaattattaaacgtacatgtaccatttattaggcaccc
gagagtaatgCTGGATATCTAAGGCATTGGCAAACTCAGTTTTGTCTTTG
GTCAATCATCAGTTTTTGTTAGGTTATGGGCGGTGATCATACCATTTTCG
AATTTGAAAACGAAATTCGTCTTCAAGTTCTTGAAGAACTGTTTTCAAGG
GATATAGTGGGAATCGCACTTATGGTACTGCTCCTAATCTTGGCAGCGTC
AAGTCTGACCAATGCAGACGTGATATGTTTTCAGTACTAAGCATTACAAA
GTTGCTTCTTTTGGTAAGATATATTCCTCTTAAAAGTACAGTAGGGCCGT
GGATTATTCAAACACAATTTCTCCTTTCTTTGTAGCGATTCCTGAACGGC
CCGAAAGTGTCATCGAAGATCAGAACAACAACATCCTCAACAGCGACCAT
CTTCAGAAAGCCAACAAAAGGAAATTGCAAAAATCATATAATCCTGTAAC
CAACATGGCGTCACAACCACAAGACCATGAGTGCACatattgtttaaaaa
tcttcCAAAGTAAAGCCACACTGGATATCCATTTGATGACGAAAAGACAC
GATTGGCAATTAAAGAAAGCTATCGAGAACATGGATTCCATAAATAATGA
AGTGACAACTGAGGACGACTTCGCCAAACATTATTTGACGAGTGGAAGGA
ATGGtaaagatattttatttttttgcttataaaacaaCAGTACTAACATC
AGTCCTTTTTTGTAAGTCTCCATAGATAGagttttctggtcccttcagAT
TTAACAAGTCACTATAACTTGAATTTCCCACTCTCGAACAATATTTAATT
CACCAGTACATGTTCAAGATATAGAGACTCGACTGAAGTTTATACAAGAA
TTAGGAATGTGTGGCTGAATATTTGGAGTCAGAAATAGTAGTAGTAGTTG
GTTGGTCTACAGGTTAAAAGGGAGGGTACTACCAGGGACGGCCACATTAA
CCAAACCTAGTTCCAAGCTGCTTGAACAATTTTGGAAACAAGGGGAATAG
TTAGAAACATCGATAAAGTAAGCATCATTTTAACCCCTTTCTTATCTCTT
TTTATTTGACATAGAAACCCAACAAGAACATTCTCCAACTCTTTGTAAAG
AAGGTCGTTATTCAAACGGCTCACTCGTTTCAAGCGAAGAAGGATATTAC
AGTACGGATAGCGATGAAACGAAACACATGAACACTTACTCTACGACCAC
CGCCAACGGGCCCTCGTGTCAACGGCGTGGCGGTGTCATAGCTAACGGGG
CGGTTGATATGGCGTCATATAAGCAACGCCCATCTGTGATACGGCTAAAA
CGTATGAAAATGGAGGAGCTTAAAGAGATATATAAACAGTATGCTGCTTC
GAGAGGCTCTGGGGATTTATATAAAAACTTACTAGACACTTATGTGGATT
TCAATTTCTATCCGGACGCTGAGAATCGTCAGTTTTCGGACAGTGAGGTA
GTTAACGTTTCAGCAAAGTCGAATCGAAAATATAGCGTTTCGGAGAAAGA
GGCGCTGATGCGAAGAGATTTGGTTTTGACGGAGATGGCGGATACGGAGA
AGAATTACGTAGACGACCTCGCGTTCATTATTAACGTAAGGAGTTtatat
agcttttaacaatCACAATACGGGAGATTGGGTACGGGTTTACCAGGGTC
TGAATGACGTTGATAATCGGTTACCTTTTTTCGTTCGATATCTTTTTTGC
GGCTTAAGGTTTTTACTGAGGATAGATTTATTCATTTTACTCATCAGTCA
AAAGTGCACTGGTGAAAACACCAAAGATTCTCTCTAAGATCTGATAATTT
TTAACTACAGTACTAATCGAtatgctccattattcgatagaTATCCAAtc
cccccttgaaaatcgaatcaaCGAGTGTCAATTGTACAGTCTTTTCACTC
TTACTAGGATATCTTCGAACAAAATCATTATCATTTGTCCTCTTAGTTGG
GAAGTAGTGTAAAACGCATCTCTATAATTCAAAACTTTgtctaattcgaa
gaaatgtCTTAGTCACAAAGTAGAGAGATGCAACCGTAGATTTATTGAAG
CTGAATTTCATTAAATGTATAACAAATACAAAATTTCAGGAGTACTTCCC
CTTGATGGATAAAGATGAAGTGTCAGAAGACTTGAATGGCGATTTCGAAA
AGATATTCGGAAATATCcaagaaatttataaatttcacTCAAGGTACGAT
TTTTACACATCCAAAATTTATATTTCGACCCTGTCTCTACTGCTGACTTT
GGAGTTGGGATTAAGGCTTGCCTTATAGATATTTGAAACAAAAGATCCGA
ATCGCTGAGACCAGTTAGGGGCTTGGTAAATAgtgatatttttatattta
tctttCTCGGTAGGATATTTTCTGAGAAGATCGAAGATTGTTTAGAAGAT
CCACAATTACTGAACGAAACATTTTGTCAATACGTACGTTTGTATTTAAC
TTGTCTGTTTCGTGTCAACATTCCAATAGCGACTACAATTAATATGTAAT
CGTGttgttcattttcatttttgttttgaatgagTGTTCTTAGTAtggga
aaattattttaaggACCTTTTCACACTGAACTACCGAGGAACTGAAGCAC
TCCAAAACTCAAACGCAAAAATCTACATCATACAAGTCCTACGATATTTT
TTCTCTGCTTCTAAANCTTTATACAAGAATTAGGAATGTGTGGCTGAATA
TTTGGAGTCAGAAATAGTAGTAGTTGGTTGGTCTACAGGTTAAAAGGGAG
GGTACTACCAGGGACGGCCACATTAACCAAACCTAGTTCCAAGCTGCTTG
AACAATTTTGGCGACTAAAGGGGAATAGTTAGAAACATCGATAAAGTAAG
CATCATTTTAACCCCTTTCTTATCTCTTTTTATTTGACATAGAAACCCAA
CAAGAACATTCTCCAACTCTTTGTAAAGAAGGTCGTTATTCAAACGGCTC
ACTCGTTTCAAGCGAAGAAGGATATTACAGTACGGATAGNTTCTCCAACT
ATTTGTAAAGAAGGTCGTTATTCAAACGGCTCACTCGTTTCAAGCGAAGA
AGGATATTACAGTACGGATAGCGATGAAACGAAACACATGAACACTTACT
CTACGACCACCGCCAACGGGCCCACGTGTCAACGGCGTGGCGGTGTCATA
GCTAACGGGGCGGTTGATATGGCGTCATATAAGCAACGCCCATCTGTGAT
ACGGCTAAAACGTATGAAAATGGAGGAGCTTAAAGAGATATATAAACAGT
ATGCTGCTTCGAGAGGCTCTGGGGATTTATATAAAAACTTACTAGACACT
TATGTGGATTTCAATTTCTATCCGGACGCTGAGAATCGTCAGTTTTCGGA
CAGTGAGGTAGTTAACGTTTCAGCAAAGTCGAATCGAAAATATAGCGTTT
CGGAGAAAGAGGCGCTGATGCGAAGAGATTTGGTTTTGACGGAGATGGCG
GATACGGAGAAGAATTACGTAGACGACCTCGCGTTCATTATTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059714-exon-scaffold_330-1491911889:504761..505323 | TCONS_00059714-exon-scaffold_330-1491911889:504761..505323 | Clytia hemisphaerica | exon |
| TCONS_00059714-exon-scaffold_330-1510915933:504761..505323 | TCONS_00059714-exon-scaffold_330-1510915933:504761..505323 | Clytia hemisphaerica | exon |
| TCONS_00059714-exon-scaffold_330-1575043694:504761..505323 | TCONS_00059714-exon-scaffold_330-1575043694:504761..505323 | Clytia hemisphaerica | exon |
| TCONS_00059714-exon-scaffold_330-1491911889:509046..509363 | TCONS_00059714-exon-scaffold_330-1491911889:509046..509363 | Clytia hemisphaerica | exon |
| TCONS_00059714-exon-scaffold_330-1510915933:509046..509363 | TCONS_00059714-exon-scaffold_330-1510915933:509046..509363 | Clytia hemisphaerica | exon |
| TCONS_00059714-exon-scaffold_330-1575043694:509046..509363 | TCONS_00059714-exon-scaffold_330-1575043694:509046..509363 | Clytia hemisphaerica | exon |
| TCONS_00059714-exon-scaffold_330-1491911889:511603..512205 | TCONS_00059714-exon-scaffold_330-1491911889:511603..512205 | Clytia hemisphaerica | exon |
| TCONS_00059714-exon-scaffold_330-1510915933:511603..512205 | TCONS_00059714-exon-scaffold_330-1510915933:511603..512205 | Clytia hemisphaerica | exon |
| TCONS_00059714-exon-scaffold_330-1575043694:511603..512205 | TCONS_00059714-exon-scaffold_330-1575043694:511603..512205 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_330 | supercontig | scaffold_330:504761..512205 + |
Blast
The following BLAST results are available for this feature:
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