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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059630 ID=TCONS_00059630|Name=TCONS_00059630|organism=Clytia hemisphaerica|type=transcript|length=1802bp
aaacaaaatacaATGGAAATATCTTCAATAAATGATCACTGTTGGAATAA
AACAGATCACAATATATATCCAGAATGTATGGAATATTGGGCATATCAAA
GAGATGGTATTAACCATAAACCAAAAATTGTCTCTATAGTCTTCCTTATA
ATCTTGATGATTCTCTGCATTGTTGGCAATGTCCTAGTCCTATTGGCTTT
CATCATGTATCGCCGACTCCGAGTCATAACACATTATTACATTGTATCCT
TAGCTGTTAGTGATCTTATCGTAGGACTTATATCGATACCTATCTGGTTA
AGTTTTGAACTGACTGGCTTTCAAAACTTACCTAACTGGATAGATGATAT
TCAAATGGTGCAAGTCATGGAATTCATTGATATTTTAAGTTGCGTGTCAT
CTATTGTCAATCTAGCTGCTATCAGCATTGATCGTTTCTTCGGGATAGTG
ACACCACTTAAACATAAAGCATGGATGACTGAGAAATCAGCCATTTTATT
CATCGTTTCATGCTGGANCTTAAACATAAAGCATGGATGACTGAGAAATC
AGCCATTTTATTCATAGTTTCATGCTGGGTCTACAGTATGGTGATAGCTG
GTACTAAACTAGCTCCTCAGTTTGAAGACTAcatcttattcaattttaca
gCTGGTTTTGCGCTCCCTCTTTTAATAATTTGCAGTTGCTACGCTTTTAT
ATTCATCCAAGTGCGAAGACATGCGAATCGTAAAATCAGTAATCAAATAT
CCAAACAATGGACACTGGCAAGGACAATTTCAGTTGTTGTTTCTTTTTTC
CTAATTTGCTGGACCCCGTTCTTTATAATCGTCTTGATGTACCAATATTG
TTTATCATGTACATTCTTCGAGCAGCCCTGGTTTGAGTACATCCCTGGAg
tgatcaaaacattacatTATTTCAACAGTTGTTGTAACCCATTTGTATAC
GGTGTATTTAATGTGAACTTTAGATCAGCTTATAAAGGTATCTTATATAA
GTGCCTTGGTAAAGAACTGAAACACACACCTTATGATGTATCTATTATTA
TTGGTAGCCGTAATGCATCTCTGAGGAATAGGTCGAATACTAGTGTCTCT
ATAATGAGCTACATGGAACCACAGTCGGGCGCCAATCAAGAGAATGATGA
TCTCCTGGTTACTGGTGATCGAGTCAGAACCTCATCCTTCAGCAATATCG
CTAATGCATTACCGAAACCGTTATCACCAAAACGATCTTTAGAAGATGAG
CCAAGAATGTTACTCAgacagaaatttcaaaaacaattatCGTTGGAGAA
TTATTCACCTGTTCAAACGCCAACGTCTTCCTTTGAAGATGATACACTCC
TGTCGGAAACCGTCAGTTTATCTCTCTCTGACAGTATATCCTCTACAGAA
TCACCGAACCTTCTTTCTTGCACAGAAAACTCAACAAACACCGAAAACTG
TAATTGGCAATTCGACAATTTGACAAATAATTCTTTGTTAGACTTTGACA
CCTTGCTTGGTCAAGCTAAAGAATCCGACATCTAATAAAACAATAAGACA
ACAAATATTCAGGTGCACGCTTTCTTTATAAAACCCAGTTATTTTTGGTT
GAGGCTTTGGCTCGGTTCTATTTTTTTGCCGGGAAAATGCTCCTAATGTA
ATATGCAATTATTTGTTcttaattatttcaaatattcaaaatattactTT
AATATTGGCTCATTAGGGGTTTAAAACCAGTAATATTTTAGTCATTCCCT
AAATCTGAGATGTATGTCTCAAGATATATTGTTGTGGAATCGTATACCTA
AT Run BLAST on NCBI protein sequence of TCONS_00059630-protein >TCONS_00059630-protein ID=TCONS_00059630-protein|Name=TCONS_00059630-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MLXLKHKAWMTEKSAILFIVSCWVYSMVIAGTKLAPQFEDYILFNFTAGF
ALPLLIICSCYAFIFIQVRRHANRKISNQISKQWTLARTISVVVSFFLIC
WTPFFIIVLMYQYCLSCTFFEQPWFEYIPGVIKTLHYFNSCCNPFVYGVF
NVNFRSAYKGILYKCLGKELKHTPYDVSIIIGSRNASLRNRSNTSVSIMS
YMEPQSGANQENDDLLVTGDRVRTSSFSNIANALPKPLSPKRSLEDEPRM
LLRQKFQKQLSLENYSPVQTPTSSFEDDTLLSETVSLSLSDSISSTESPN
LLSCTENSTNTENCNWQFDNLTNNSLLDFDTLLGQAKESDI Run BLAST on NCBI transcript from alignment at scaffold_329:416292..418093 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059630 ID=TCONS_00059630|Name=TCONS_00059630|organism=Clytia hemisphaerica|type=transcript|length=1802bp|location=Sequence derived from alignment at scaffold_329:416292..418093 (Clytia hemisphaerica)
ATTAGGTATACGATTCCACAACAATATATCTTGAGACATACATCTCAGAT
TTAGGGAATGACTAAAATATTACTGGTTTTAAACCCCTAATGAGCCAATA
TTAAagtaatattttgaatatttgaaataattaagAACAAATAATTGCAT
ATTACATTAGGAGCATTTTCCCGGCAAAAAAATAGAACCGAGCCAAAGCC
TCAACCAAAAATAACTGGGTTTTATAAAGAAAGCGTGCACCTGAATATTT
GTTGTCTTATTGTTTTATTAGATGTCGGATTCTTTAGCTTGACCAAGCAA
GGTGTCAAAGTCTAACAAAGAATTATTTGTCAAATTGTCGAATTGCCAAT
TACAGTTTTCGGTGTTTGTTGAGTTTTCTGTGCAAGAAAGAAGGTTCGGT
GATTCTGTAGAGGATATACTGTCAGAGAGAGATAAACTGACGGTTTCCGA
CAGGAGTGTATCATCTTCAAAGGAAGACGTTGGCGTTTGAACAGGTGAAT
AATTCTCCAACGataattgtttttgaaatttctgtcTGAGTAACATTCTT
GGCTCATCTTCTAAAGATCGTTTTGGTGATAACGGTTTCGGTAATGCATT
AGCGATATTGCTGAAGGATGAGGTTCTGACTCGATCACCAGTAACCAGGA
GATCATCATTCTCTTGATTGGCGCCCGACTGTGGTTCCATGTAGCTCATT
ATAGAGACACTAGTATTCGACCTATTCCTCAGAGATGCATTACGGCTACC
AATAATAATAGATACATCATAAGGTGTGTGTTTCAGTTCTTTACCAAGGC
ACTTATATAAGATACCTTTATAAGCTGATCTAAAGTTCACATTAAATACA
CCGTATACAAATGGGTTACAACAACTGTTGAAATAatgtaatgttttgat
cacTCCAGGGATGTACTCAAACCAGGGCTGCTCGAAGAATGTACATGATA
AACAATATTGGTACATCAAGACGATTATAAAGAACGGGGTCCAGCAAATT
AGGAAAAAAGAAACAACAACTGAAATTGTCCTTGCCAGTGTCCATTGTTT
GGATATTTGATTACTGATTTTACGATTCGCATGTCTTCGCACTTGGATGA
ATATAAAAGCGTAGCAACTGCAAATTATTAAAAGAGGGAGCGCAAAACCA
GctgtaaaattgaataagatgTAGTCTTCAAACTGAGGAGCTAGTTTAGT
ACCAGCTATCACCATACTGTAGACCCAGCATGAAACTATGAATAAAATGG
CTGATTTCTCAGTCATCCATGCTTTATGTTTAAGNTCCAGCATGAAACGA
TGAATAAAATGGCTGATTTCTCAGTCATCCATGCTTTATGTTTAAGTGGT
GTCACTATCCCGAAGAAACGATCAATGCTGATAGCAGCTAGATTGACAAT
AGATGACACGCAACTTAAAATATCAATGAATTCCATGACTTGCACCATTT
GAATATCATCTATCCAGTTAGGTAAGTTTTGAAAGCCAGTCAGTTCAAAA
CTTAACCAGATAGGTATCGATATAAGTCCTACGATAAGATCACTAACAGC
TAAGGATACAATGTAATAATGTGTTATGACTCGGAGTCGGCGATACATGA
TGAAAGCCAATAGGACTAGGACATTGCCAACAATGCAGAGAATCATCAAG
ATTATAAGGAAGACTATAGAGACAATTTTTGGTTTATGGTTAATACCATC
TCTTTGATATGCCCAATATTCCATACATTCTGGATATATATTGTGATCTG
TTTTATTCCAACAGTGATCATTTATTGAAGATATTTCCATtgtattttgt
tt Coding sequence (CDS) from alignment at scaffold_329:416292..418093 >TCONS_00059630 ID=TCONS_00059630|Name=TCONS_00059630|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_329:416292..418093 (Clytia hemisphaerica)
TTAGATGTCGGATTCTTTAGCTTGACCAAGCAAGGTGTCAAAGTCTAACA
AAGAATTATTTGTCAAATTGTCGAATTGCCAATTACAGTTTTCGGTGTTT
GTTGAGTTTTCTGTGCAAGAAAGAAGGTTCGGTGATTCTGTAGAGGATAT
ACTGTCAGAGAGAGATAAACTGACGGTTTCCGACAGGAGTGTATCATCTT
CAAAGGAAGACGTTGGCGTTTGAACAGGTGAATAATTCTCCAACGataat
tgtttttgaaatttctgtcTGAGTAACATTCTTGGCTCATCTTCTAAAGA
TCGTTTTGGTGATAACGGTTTCGGTAATGCATTAGCGATATTGCTGAAGG
ATGAGGTTCTGACTCGATCACCAGTAACCAGGAGATCATCATTCTCTTGA
TTGGCGCCCGACTGTGGTTCCATGTAGCTCATTATAGAGACACTAGTATT
CGACCTATTCCTCAGAGATGCATTACGGCTACCAATAATAATAGATACAT
CATAAGGTGTGTGTTTCAGTTCTTTACCAAGGCACTTATATAAGATACCT
TTATAAGCTGATCTAAAGTTCACATTAAATACACCGTATACAAATGGGTT
ACAACAACTGTTGAAATAatgtaatgttttgatcacTCCAGGGATGTACT
CAAACCAGGGCTGCTCGAAGAATGTACATGATAAACAATATTGGTACATC
AAGACGATTATAAAGAACGGGGTCCAGCAAATTAGGAAAAAAGAAACAAC
AACTGAAATTGTCCTTGCCAGTGTCCATTGTTTGGATATTTGATTACTGA
TTTTACGATTCGCATGTCTTCGCACTTGGATGAATATAAAAGCGTAGCAA
CTGCAAATTATTAAAAGAGGGAGCGCAAAACCAGctgtaaaattgaataa
gatgTAGTCTTCAAACTGAGGAGCTAGTTTAGTACCAGCTATCACCATAC
TGTAGACCCAGCATGAAACTATGAATAAAATGGCTGATTTCTCAGTCATC
CATGCTTTATGTTTAAGNTCCAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059630-exon-scaffold_329-1491911889:416292..418093 | TCONS_00059630-exon-scaffold_329-1491911889:416292..418093 | Clytia hemisphaerica | exon |
| TCONS_00059630-exon-scaffold_329-1510915933:416292..418093 | TCONS_00059630-exon-scaffold_329-1510915933:416292..418093 | Clytia hemisphaerica | exon |
| TCONS_00059630-exon-scaffold_329-1575043694:416292..418093 | TCONS_00059630-exon-scaffold_329-1575043694:416292..418093 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:416292..418093 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00059630 vs. Swiss-Prot (Human)
Match: SSR2 (Somatostatin receptor type 2 OS=Homo sapiens GN=SSTR2 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.081e-23 Identity = 45/133 (33.83%), Postives = 72/133 (54.14%), Query Frame = 3
Query: 621 FEDYILFNFTAGFALPLLIICSCYAFIFIQVRRHANR-KISNQISKQWTLARTISVVVSFFLICWTPFFII-VLMYQYCLSCTFFEQPWFEYIPGVIKTLHYFNSCCNPFVYGVFNVNFRSAYKGILYKCLGK 1013
+ +I++ F GF +PL IIC CY FI I+V+ R S + + + R +S+VV+ F+ CW PF+I V +S T + F++ + L Y NSC NP +Y + NF+ +++ +L CL K
Sbjct: 205 YTGFIIYTFILGFLVPLTIICLCYLFIIIKVKSSGIRVGSSKRKKSEKKVTRMVSIVVAVFIFCWLPFYIFNVSSVSMAISPTPALKGMFDF----VVVLTYANSCANPILYAFLSDNFKKSFQNVL--CLVK 331 HSP 2 Score: 55.8398 bits (133), Expect = 1.081e-23 Identity = 35/131 (26.72%), Postives = 77/131 (58.78%), Query Frame = 1
Query: 136 IVFLIILMILCIVGNVLVLLAFIMYRRLRVITHYYIVSLAVSDLIVGLISIPIWLSFELTGFQNLPNWIDDIQMVQVMEFIDILSCVSSIVNLAAISIDRFFGIVTPLKHKAWMTEKSAILFIVSCWXLNI 528
I F++ ++ LC GN LV+ + Y +++ IT+ YI++LA++D + ++ +P +L+ ++ L +W + +V+ +D ++ +SI L +SIDR+ +V P+K W ++A + ++ W +++
Sbjct: 49 IYFVVCIIGLC--GNTLVIYVILRYAKMKTITNIYILNLAIADELF-MLGLP-FLAMQVA----LVHWPFGKAICRVVMTVDGINQFTSIFCLTVMSIDRYLAVVHPIKSAKWRRPRTAKMITMAVWGVSL 171
The following BLAST results are available for this feature:
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