TCONS_00059036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059036
Unique NameTCONS_00059036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1153

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059036 ID=TCONS_00059036|Name=TCONS_00059036|organism=Clytia hemisphaerica|type=transcript|length=1153bp
TTTTAAATAGATGATTATAATTTACCTACTCTTCATAACATTTTCCTTct
aaaaaatagataaaaaaatatttgaattatgCCTCGAATACCAAGGCTAG
AGCGCATGTTTGTCAAACCAAACAACTCCTGGTCACGTTTTCCAAAACGT
CCATTACCTTTTCGTATGGCAGAATGGGAAACCAAAGAGCACAAAGGTGA
AGTGTTACGTGTCACCAAAATCAAACCACCATGTCAAATTCCTCCTATAA
AACCCATCAAAGATTGGCACATTGTGCGTGgtgatttggttgaaatttta
gTTGGTCCTGATAAAGGGAAGCAAGGAAAAGTGAGAGCTGTTGCTAGGAA
AAAGAACCAATTAAAAGTGATTGGATTGAACTGTTCAGATAACTTTATGC
CTGATATGGGAGATGGAGAGCCTGGGTTTATGCTGAATGAGGAACCACTA
CACTATACTGAAGTGAAGCTTGTAGATCCTGCAACTGGGAAACCTGCTGA
TACAATTTACAAGTTCAATGAGGAAGGCTTAAAAGTAAGGGTTTGCAAAG
AGAGTGGTCGTGTTATTCCTAAACCACCTGGTGAAAGAACAGACTGGAAA
TCCAGAAGCGCTGTTAAGGAAGGCGATTTAGACACTAAGTCTGATGCTGT
ACAACAATACACATATGTTCCATCTTTGTTGTTGTTTCATGAGGAAATTA
TGAAGGAAATGAACATCCCAATGTCTGTGCCCAAGAGGGGTTTAGAACGT
AGAGACttgattttcatggaaattGAAAGTGAAGCATTTGGTGAACGCCC
TTTGGAATCATCACAGGATCAAGCAAGTGAAAACAGTGATTCTGGAACTT
TCGgtaaaattgctcaaaaattgaaattttggtagTGTGTAGAATCCAAT
GTACttatagtttttttatttcattataaGTATAATCATGGTAGAAATAC
ATTGAGATTTTTGGGTATTTGTTAGCATTTTGCCGCGAGGGCTGCAATTT
TCCATATGATTCTActgattttttttatgttgaaaGGGTTTAGTTGCTTC
CATCCTTTCATTCTTATTCACAGCCTTATGGACGAAAGTCTAATTTTAAT
AATTCTATGTTCCATTAAGTTAGAACACTTTTAAAATCGTTTGTGGTTTG
CAG
Run BLAST on NCBI

transcript from alignment at scaffold_316:3636..4788+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059036 ID=TCONS_00059036|Name=TCONS_00059036|organism=Clytia hemisphaerica|type=transcript|length=1153bp|location=Sequence derived from alignment at scaffold_316:3636..4788+ (Clytia hemisphaerica)
TTTTAAATAGATGATTATAATTTACCTACTCTTCATAACATTTTCCTTct
aaaaaatagataaaaaaatatttgaattatgCCTCGAATACCAAGGCTAG
AGCGCATGTTTGTCAAACCAAACAACTCCTGGTCACGTTTTCCAAAACGT
CCATTACCTTTTCGTATGGCAGAATGGGAAACCAAAGAGCACAAAGGTGA
AGTGTTACGTGTCACCAAAATCAAACCACCATGTCAAATTCCTCCTATAA
AACCCATCAAAGATTGGCACATTGTGCGTGgtgatttggttgaaatttta
gTTGGTCCTGATAAAGGGAAGCAAGGAAAAGTGAGAGCTGTTGCTAGGAA
AAAGAACCAATTAAAAGTGATTGGATTGAACTGTTCAGATAACTTTATGC
CTGATATGGGAGATGGAGAGCCTGGGTTTATGCTGAATGAGGAACCACTA
CACTATACTGAAGTGAAGCTTGTAGATCCTGCAACTGGGAAACCTGCTGA
TACAATTTACAAGTTCAATGAGGAAGGCTTAAAAGTAAGGGTTTGCAAAG
AGAGTGGTCGTGTTATTCCTAAACCACCTGGTGAAAGAACAGACTGGAAA
TCCAGAAGCGCTGTTAAGGAAGGCGATTTAGACACTAAGTCTGATGCTGT
ACAACAATACACATATGTTCCATCTTTGTTGTTGTTTCATGAGGAAATTA
TGAAGGAAATGAACATCCCAATGTCTGTGCCCAAGAGGGGTTTAGAACGT
AGAGACttgattttcatggaaattGAAAGTGAAGCATTTGGTGAACGCCC
TTTGGAATCATCACAGGATCAAGCAAGTGAAAACAGTGATTCTGGAACTT
TCGgtaaaattgctcaaaaattgaaattttggtagTGTGTAGAATCCAAT
GTACttatagtttttttatttcattataaGTATAATCATGGTAGAAATAC
ATTGAGATTTTTGGGTATTTGTTAGCATTTTGCCGCGAGGGCTGCAATTT
TCCATATGATTCTActgattttttttatgttgaaaGGGTTTAGTTGCTTC
CATCCTTTCATTCTTATTCACAGCCTTATGGACGAAAGTCTAATTTTAAT
AATTCTATGTTCCATTAAGTTAGAACACTTTTAAAATCGTTTGTGGTTTG
CAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037186XLOC_037186Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059036-exon-scaffold_316-1491911889:3636..4788TCONS_00059036-exon-scaffold_316-1491911889:3636..4788Clytia hemisphaericaexon
TCONS_00059036-exon-scaffold_316-1510915933:3636..4788TCONS_00059036-exon-scaffold_316-1510915933:3636..4788Clytia hemisphaericaexon
TCONS_00059036-exon-scaffold_316-1575043694:3636..4788TCONS_00059036-exon-scaffold_316-1575043694:3636..4788Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_316supercontigscaffold_316:3636..4788 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.4243	37.9143	12.1017	10.5704	30.0533	22.1131	25.2277	25.7797	29.1674	26.9522	18.5136	17.5805	12.5036	12.2964	15.8034	19.1298	45.9024	45.1221	7.28686	7.99017	24.6112	24.705	53.6196	45.0335	15.5932	16.9002	17.5215	13.9868	31.6617	35.4039
Blast
[Close]
BLAST of TCONS_00059036 vs. Swiss-Prot (Human)
Match: RM24 (39S ribosomal protein L24, mitochondrial OS=Homo sapiens GN=MRPL24 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.218e-28
Identity = 63/152 (41.45%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:  262 DWHIVRGDLVEILVGPDKGKQGKVRAVARKKNQLKVIGLNCSDNFMPDMGDGEPGFMLNEEPLHYTEVKLVDPATGKPADTIYKFNEEGLKVRVCKESGRVIPKPPGERTDWKSRSAVKEGDLDTKSDAVQQYTYVPSLLLFHEEIMKEMNI 717
            DW++  GD VEIL G D GKQGKV  V R++N + V GLN    ++    D     + +E PL + +VKLVDP   KP +  ++F E G +VRV   SGR+IPKP   R D        +G  DT  +   + TYVP L    EE+M+ M I
Sbjct:   53 DWYLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTMDYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRFTEAGERVRVSTRSGRIIPKPEFPRADGIVPETWIDGPKDTSVEDALERTYVPCLKTLQEEVMEAMGI 204
The following BLAST results are available for this feature:
BLAST of TCONS_00059036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM246.218e-2841.4539S ribosomal protein L24, mitochondrial OS=Homo s... [more]
back to top