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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058809 ID=TCONS_00058809|Name=TCONS_00058809|organism=Clytia hemisphaerica|type=transcript|length=1695bp
AACctccttcaaaacaaaaaaccaaaacaaaaaatttgaattgataataa
aaaaaaagttcaagtttgctgtatatatatatattttatctCAACACAAA
ATCACTTTATTTTTGTAATATTCTGAAAATATATTATTGGAATTACAGTA
TATAAGATCAAACTCGGTTGACATGAAACATTTAAACCAACCCGAGCTGG
CCATCATAATACATAAACTATCAAAATGTCAATACATAggtgaaaattat
caaaacaaaaaaatgaccTATAAACAGTATACATTTAACTAAAAAAATCT
AACCTAAAgtgaaatttcttaaaaaaataatttattaatcTACAGATTCT
ATAAAAATGAGTCAAAGATATCATTGGTATTTCAATAATCTAAGATACat
taatttttatataaaatttcaTCACTCTTGCTAGCTCGCTTAGTAATTTT
ATCCCTTACCTACGTCAAAGGCACTTAACATTAAAATCTATGTTAAACAA
TGTATCTAAATTTGGCATTCATTTCACGGGCTGCAATGTTTATATTTCAA
TCTCGACATGACTTCCCaatttgaaatcgtgattcttAACAAATGACGTG
TCGTAAAACTGGCATCGACTACATAGACGGCGTTACGTCAGATACACGAA
AGAATAGCGGCCAAAAATGATTGTATTACGGGGGTTTTTGATTAACAATT
TTCTATGAATCAATGCACCGCCTAAATAGGTATTTAGTGCCCATATAAGG
CAAGACTGCATAAGTGTAAAACCTTTTTAGCGTGGTATGAAGTATCAAAC
ACCTAAGacttttttcatctttaaaTTGAGCTGGCGTTACCGGAAACCTC
AAACGGCATGAGCAAAATCAATATATCATACGTTCTAACGGAAATATGCA
GTCTATTGATATttgacaaaaagaaaattcttcCACAAAGAAATCATGTc
gacttttgtcatgaattctGTTTGAAGAATAGTTCCGCATTTAAGAATTT
ATCTAGATGACAGGATGGTTCCTGCATTTTAAGGTACAGTAGTTATTTAT
CCCAAGATGTTATATTTTCCTCTATTGCTACCCTTGCCCCACCCTCACGA
TCTTTTTTGTAACATTGCACCATCTTGCTGGATAATTCCTACACAAAAAC
TTTCTGGTCAGGATGAGCTGACTCGCACAAGATCAAAATCTAAATTCTTT
CATAATCATCACAagtaaatttgtaaatttgataatTCGTGAAGAAATGG
TTTTCACGAGAAGCTCACATATACAACAAACGTTCGCTGTCATGACAACA
GTTGAGAGCTCTACTGGATAAAAAAGGGCGgtttataaaaagattttgtc
GCTTAGACAAACAGGTCCACTTAGTGTTTTATTTGGTGACAGTTTGAACA
TAAAAACTTAAATCTCCTTAAATCAGATTATCATTAAAGACGATTAAGAA
TTCGAGTCGACAGAGTGTTGAGAAGAGGGACACACGAAAGACCCCTTGCA
ATGACAATCAAAAACATCTAGTCTTTGTTTGTCAACTGAAACAATCAAAA
AGTCGCGATTTCTCTTTTACAGCTACTTTATCACGATAAAAAGGAATCaa
gtttttgtaatttaattttacacgaacaaaaatataatttatctAACGGT
CCTTTTGCCATTTTCCGGTGTCCAAAAGAGTCCAAAGTCCAATAC Run BLAST on NCBI transcript from alignment at scaffold_313:620229..621923 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058809 ID=TCONS_00058809|Name=TCONS_00058809|organism=Clytia hemisphaerica|type=transcript|length=1695bp|location=Sequence derived from alignment at scaffold_313:620229..621923 (Clytia hemisphaerica)
GTATTGGACTTTGGACTCTTTTGGACACCGGAAAATGGCAAAAGGACCGT
TagataaattatatttttgttcgtgtaaaattaaattacaaaaacttGAT
TCCTTTTTATCGTGATAAAGTAGCTGTAAAAGAGAAATCGCGACTTTTTG
ATTGTTTCAGTTGACAAACAAAGACTAGATGTTTTTGATTGTCATTGCAA
GGGGTCTTTCGTGTGTCCCTCTTCTCAACACTCTGTCGACTCGAATTCTT
AATCGTCTTTAATGATAATCTGATTTAAGGAGATTTAAGTTTTTATGTTC
AAACTGTCACCAAATAAAACACTAAGTGGACCTGTTTGTCTAAGCgacaa
aatctttttataaacCGCCCTTTTTTATCCAGTAGAGCTCTCAACTGTTG
TCATGACAGCGAACGTTTGTTGTATATGTGAGCTTCTCGTGAAAACCATT
TCTTCACGAattatcaaatttacaaatttactTGTGATGATTATGAAAGA
ATTTAGATTTTGATCTTGTGCGAGTCAGCTCATCCTGACCAGAAAGTTTT
TGTGTAGGAATTATCCAGCAAGATGGTGCAATGTTACAAAAAAGATCGTG
AGGGTGGGGCAAGGGTAGCAATAGAGGAAAATATAACATCTTGGGATAAA
TAACTACTGTACCTTAAAATGCAGGAACCATCCTGTCATCTAGATAAATT
CTTAAATGCGGAACTATTCTTCAAACagaattcatgacaaaagtcgACAT
GATTTCTTTGTGgaagaattttctttttgtcaaATATCAATAGACTGCAT
ATTTCCGTTAGAACGTATGATATATTGATTTTGCTCATGCCGTTTGAGGT
TTCCGGTAACGCCAGCTCAAtttaaagatgaaaaaagtCTTAGGTGTTTG
ATACTTCATACCACGCTAAAAAGGTTTTACACTTATGCAGTCTTGCCTTA
TATGGGCACTAAATACCTATTTAGGCGGTGCATTGATTCATAGAAAATTG
TTAATCAAAAACCCCCGTAATACAATCATTTTTGGCCGCTATTCTTTCGT
GTATCTGACGTAACGCCGTCTATGTAGTCGATGCCAGTTTTACGACACGT
CATTTGTTaagaatcacgatttcaaattGGGAAGTCATGTCGAGATTGAA
ATATAAACATTGCAGCCCGTGAAATGAATGCCAAATTTAGATACATTGTT
TAACATAGATTTTAATGTTAAGTGCCTTTGACGTAGGTAAGGGATAAAAT
TACTAAGCGAGCTAGCAAGAGTGAtgaaattttatataaaaattaatGTA
TCTTAGATTATTGAAATACCAATGATATCTTTGACTCATTTTTATAGAAT
CTGTAgattaataaattatttttttaagaaatttcacTTTAGGTTAGATT
TTTTTAGTTAAATGTATACTGTTTATAggtcatttttttgttttgataat
tttcaccTATGTATTGACATTTTGATAGTTTATGTATTATGATGGCCAGC
TCGGGTTGGTTTAAATGTTTCATGTCAACCGAGTTTGATCTTATATACTG
TAATTCCAATAATATATTTTCAGAATATTACAAAAATAAAGTGATTTTGT
GTTGagataaaatatatatatatacagcaaacttgaactttttttttatt
atcaattcaaattttttgttttggttttttgttttgaaggagGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058809-exon-scaffold_313-1491911889:620229..621923 | TCONS_00058809-exon-scaffold_313-1491911889:620229..621923 | Clytia hemisphaerica | exon |
| TCONS_00058809-exon-scaffold_313-1510915933:620229..621923 | TCONS_00058809-exon-scaffold_313-1510915933:620229..621923 | Clytia hemisphaerica | exon |
| TCONS_00058809-exon-scaffold_313-1575043694:620229..621923 | TCONS_00058809-exon-scaffold_313-1575043694:620229..621923 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:620229..621923 . |
Blast
The following BLAST results are available for this feature:
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