TCONS_00058807 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058807
Unique NameTCONS_00058807
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058807 ID=TCONS_00058807|Name=TCONS_00058807|organism=Clytia hemisphaerica|type=transcript|length=741bp
CTCAACCCTTGAGCACATTACTTTCACAGAAGATGATTTCATCCAACAAA
TTGACACTATTCCAGCCAACTTGTCAGCCGGACCAGATGGCTTGCaagca
aagtttttcaaaatgtgcaAGAAATCACTTTCTAAGCCACTTAAGATGAT
ATGGCAAAACAACTTTGACAAAGGAATCACACctgaaattctcaaaacaa
gCCACATTGCACCAATCTTCAAGAAAGGAGATCAAGGTTTACCAGAGAAT
TATCGACCTGTTGCCCTGACATCAATTACCactaaaatatttgagaaaat
agtcAGAGAGAAATTGCAAACCCACCGTGAAGAAAACAACCTATACAATC
CAACACAACACGGTTTCAGAACAGGGCGATCTTGCTTGAGTCAACTATTG
GCTCATGTAGAAAGATTGATATCTCACCTACAAAACAATGAAGATGTTGA
TGTAATCTACCTCGACTTCAGCAAGGCCTTTGACAAGGTGGACCATCAAA
TCTTGCTACATAAGCTAAAAATCAATGGAATCAAAGGACAACTATTGAAC
TGGATACAATCCTTCCTTACTGAGAGATACCAAAAAGTTTCCATAATCAC
GTTCCTGTCAGATGAAGCGAAAGTTACAAGCGGAGTTCCACAAGGCTCAG
TTCTGGGCCCCCTCTTGTTTGTGGTAATGATTAGTGACATCAACAAAAAG
ATTAAACATTCCATCCTCTCATCTTTTGCTGACGACACAAG
Run BLAST on NCBI

protein sequence of TCONS_00058807-protein

>TCONS_00058807-protein ID=TCONS_00058807-protein|Name=TCONS_00058807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
STLEHITFTEDDFIQQIDTIPANLSAGPDGLQAKFFKMCKKSLSKPLKMI
WQNNFDKGITPEILKTSHIAPIFKKGDQGLPENYRPVALTSITTKIFEKI
VREKLQTHREENNLYNPTQHGFRTGRSCLSQLLAHVERLISHLQNNEDVD
VIYLDFSKAFDKVDHQILLHKLKINGIKGQLLNWIQSFLTERYQKVSIIT
FLSDEAKVTSGVPQGSVLGPLLFVVMISDINKKIKHSILSSFADDT
Run BLAST on NCBI

transcript from alignment at scaffold_313:598152..598892

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058807 ID=TCONS_00058807|Name=TCONS_00058807|organism=Clytia hemisphaerica|type=transcript|length=741bp|location=Sequence derived from alignment at scaffold_313:598152..598892 (Clytia hemisphaerica)
CTTGTGTCGTCAGCAAAAGATGAGAGGATGGAATGTTTAATCTTTTTGTT
GATGTCACTAATCATTACCACAAACAAGAGGGGGCCCAGAACTGAGCCTT
GTGGAACTCCGCTTGTAACTTTCGCTTCATCTGACAGGAACGTGATTATG
GAAACTTTTTGGTATCTCTCAGTAAGGAAGGATTGTATCCAGTTCAATAG
TTGTCCTTTGATTCCATTGATTTTTAGCTTATGTAGCAAGATTTGATGGT
CCACCTTGTCAAAGGCCTTGCTGAAGTCGAGGTAGATTACATCAACATCT
TCATTGTTTTGTAGGTGAGATATCAATCTTTCTACATGAGCCAATAGTTG
ACTCAAGCAAGATCGCCCTGTTCTGAAACCGTGTTGTGTTGGATTGTATA
GGTTGTTTTCTTCACGGTGGGTTTGCAATTTCTCTCTgactattttctca
aatattttagtGGTAATTGATGTCAGGGCAACAGGTCGATAATTCTCTGG
TAAACCTTGATCTCCTTTCTTGAAGATTGGTGCAATGTGGcttgttttga
gaatttcagGTGTGATTCCTTTGTCAAAGTTGTTTTGCCATATCATCTTA
AGTGGCTTAGAAAGTGATTTCTtgcacattttgaaaaactttgcttGCAA
GCCATCTGGTCCGGCTGACAAGTTGGCTGGAATAGTGTCAATTTGTTGGA
TGAAATCATCTTCTGTGAAAGTAATGTGCTCAAGGGTTGAG

Coding sequence (CDS) from alignment at scaffold_313:598152..598892

>TCONS_00058807 ID=TCONS_00058807|Name=TCONS_00058807|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_313:598152..598892 (Clytia hemisphaerica)
TGTGTCGTCAGCAAAAGATGAGAGGATGGAATGTTTAATCTTTTTGTTGA
TGTCACTAATCATTACCACAAACAAGAGGGGGCCCAGAACTGAGCCTTGT
GGAACTCCGCTTGTAACTTTCGCTTCATCTGACAGGAACGTGATTATGGA
AACTTTTTGGTATCTCTCAGTAAGGAAGGATTGTATCCAGTTCAATAGTT
GTCCTTTGATTCCATTGATTTTTAGCTTATGTAGCAAGATTTGATGGTCC
ACCTTGTCAAAGGCCTTGCTGAAGTCGAGGTAGATTACATCAACATCTTC
ATTGTTTTGTAGGTGAGATATCAATCTTTCTACATGAGCCAATAGTTGAC
TCAAGCAAGATCGCCCTGTTCTGAAACCGTGTTGTGTTGGATTGTATAGG
TTGTTTTCTTCACGGTGGGTTTGCAATTTCTCTCTgactattttctcaaa
tattttagtGGTAATTGATGTCAGGGCAACAGGTCGATAATTCTCTGGTA
AACCTTGATCTCCTTTCTTGAAGATTGGTGCAATGTGGcttgttttgaga
atttcagGTGTGATTCCTTTGTCAAAGTTGTTTTGCCATATCATCTTAAG
TGGCTTAGAAAGTGATTTCTtgcacattttgaaaaactttgcttGCAAGC
CATCTGGTCCGGCTGACAAGTTGGCTGGAATAGTGTCAATTTGTTGGATG
AAATCATCTTCTGTGAAAGTAATGTGCTCAAGGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037050XLOC_037050Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058807-proteinTCONS_00058807-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058807-exon-scaffold_313-1491911889:598152..598892TCONS_00058807-exon-scaffold_313-1491911889:598152..598892Clytia hemisphaericaexon
TCONS_00058807-exon-scaffold_313-1510915933:598152..598892TCONS_00058807-exon-scaffold_313-1510915933:598152..598892Clytia hemisphaericaexon
TCONS_00058807-exon-scaffold_313-1575043694:598152..598892TCONS_00058807-exon-scaffold_313-1575043694:598152..598892Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:598152..598892 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.95097	2.63531	3.68575	3.59063	1.78825	0.721289	0.55623	0.801049	0.673936	0.996197	0.731169	1.20526	1.19847	0.802724	0.564545	1.36807	0.712845	0.46917	1.68044	0.974409	1.27021	2.0617	0.680905	1.27396	0.777828	1.12323	2.43681	2.60328	2.84487	2.18327
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
[Close]
BLAST of TCONS_00058807 vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.433e-18
Identity = 74/257 (28.79%), Postives = 121/257 (47.08%), Query Frame = 2 
Query:   26 TEDDFIQQIDTIPANLSAGPDGLQAKFFKMCKKSLSKPLKMIWQNNFDKGITPEILKTSHIAPIFKKG-DQGLPENYRPVALTSITTKIFEKIVREKLQTHREENNLYNPTQHGFRTGRSCLSQLLAHVERLISHLQNNEDVD--VIYLDFSKAFDKVDHQILLHKLKINGIKGQLLNWIQSFLTERYQKVSIITFLSDEA----KVTSGVPQGSVLGPLLFVVMISDINKKIKHS-------------ILSSFADD 736
            T  + +  I+++P   S GPDG  A+F++  K+ L   L  ++Q+   +GI P     + I  I K G D    EN+RP++L +I  KI  KI+  ++Q H ++  L +  Q GF  G      +   +  +I H+   +D +  +I +D  KAFDK+    +L  L   GI G  L  I++     Y K +    L+ +      + +G  QG  L PLLF +++  + + I+                LS FADD
Sbjct:  454 TGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKK--LIHHDQVGFIPGMQGWFNIRKSIN-VIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAI----YDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADD 703
The following BLAST results are available for this feature:
BLAST of TCONS_00058807 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LORF22.433e-1828.79LINE-1 retrotransposable element ORF2 protein OS=H... [more]
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