TCONS_00058807-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058807-protein
Unique NameTCONS_00058807-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058807-protein ID=TCONS_00058807-protein|Name=TCONS_00058807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
STLEHITFTEDDFIQQIDTIPANLSAGPDGLQAKFFKMCKKSLSKPLKMI
WQNNFDKGITPEILKTSHIAPIFKKGDQGLPENYRPVALTSITTKIFEKI
VREKLQTHREENNLYNPTQHGFRTGRSCLSQLLAHVERLISHLQNNEDVD
VIYLDFSKAFDKVDHQILLHKLKINGIKGQLLNWIQSFLTERYQKVSIIT
FLSDEAKVTSGVPQGSVLGPLLFVVMISDINKKIKHSILSSFADDT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037050XLOC_037050Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058807TCONS_00058807Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.270coord: 41..246
e-value: 1.2E-18
score: 66.9
NoneNo IPR availableCDDcd01650RT_nLTR_likecoord: 66..246
e-value: 2.0542E-40
score: 138.963
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 15..245
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 74..246
e-value: 2.1E-34
score: 118.9
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 53..246
score: 21.175

Blast
[Close]
BLAST of TCONS_00058807-protein vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.371e-19
Identity = 74/257 (28.79%), Postives = 121/257 (47.08%), Query Frame = 0 
Query:    9 TEDDFIQQIDTIPANLSAGPDGLQAKFFKMCKKSLSKPLKMIWQNNFDKGITPEILKTSHIAPIFKKG-DQGLPENYRPVALTSITTKIFEKIVREKLQTHREENNLYNPTQHGFRTGRSCLSQLLAHVERLISHLQNNEDVD--VIYLDFSKAFDKVDHQILLHKLKINGIKGQLLNWIQSFLTERYQKVSIITFLSDEA----KVTSGVPQGSVLGPLLFVVMISDINKKIKHS-------------ILSSFADD 245
            T  + +  I+++P   S GPDG  A+F++  K+ L   L  ++Q+   +GI P     + I  I K G D    EN+RP++L +I  KI  KI+  ++Q H ++  L +  Q GF  G      +   +  +I H+   +D +  +I +D  KAFDK+    +L  L   GI G  L  I++     Y K +    L+ +      + +G  QG  L PLLF +++  + + I+                LS FADD
Sbjct:  454 TGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKK--LIHHDQVGFIPGMQGWFNIRKSIN-VIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAI----YDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADD 703
The following BLAST results are available for this feature:
BLAST of TCONS_00058807-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LORF28.371e-1928.79LINE-1 retrotransposable element ORF2 protein OS=H... [more]
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