|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056718 ID=TCONS_00056718|Name=TCONS_00056718|organism=Clytia hemisphaerica|type=transcript|length=1370bp
CCCTGCCCCGGGTAATGTTCGcctgtacacgttttttgtaaaaatttata
aGTTTCTCTACTCTTAGGTAGTTATAAACTTATTCTAAGGCTGGATTAAA
ACCTTCTTTTGATATTAAAACAACCCCCTGCCAGATACAGAaagatattt
tgatgaaaagtatttttttttgcgAGAATAAACATATTTAATATATGTAC
CGTGTAAGAGGAGCCTTAGCATTATCGAATCTCAAGTCGAACGAGGACGT
TCCATTttagaatgttttgatttttttattTCTTTTTTGCAACCGAAATG
AATTTTTATcagaatcaaatcaaaagtaGCTTTTCTAGCTGCTAGCACAA
TAAATTTTACGATACGAAGATCACGAAGATAATCACAACATATTCATCAG
AAAGTTAAGTATTAGATTATTATACCTTCCAAATTTCTTGGATTCATTTT
GCATAACCATGACGTGTCttcatatttttcagaaaaaatgtgTCTTGTTT
CCTGAAAGTCTTTTTAGGAAATGATAAAAACTGATTTGAAAAAGTCTTca
taaaaatgggaaaattatTGACAGTCAATCGTTAATAGAATAATATTTTT
ACGGTCAATGGGATATTTCGAATAACTTCTTGACCGTCAAAAGAAATCGA
ATCATTTATTGACCGTCAATATTTCGGATCGAACGATTTATTGACAGTCA
ATGGTAAATCGAACTCGAAAtcgaattttcgaattttttcgtCCGAATTA
CCGTTTCTGACATATTAATTTGATTtcactttatttcattttcatcatca
tcatcagctGAGCAACCGTTTCTgacatttaatttcatttcactttattt
cattttcatcaaaattcacGTCTGTTGTCTACGATGGCTTTATCAAACCG
ACCACAACCGATGACGTTACCTGGATCTCAGCaaaattcattcatttttg
gaacatCGCCTTTGGCACTCTCACCAGAGATAGCGTTGACTGGTGCAACA
AACAACAATTTGACAAACACGTTGAGTGGCTTAACCGTGGACCAACAACA
ATCGCTTCTTCAAGCACTTCAAGCGGCTGAACGAGTCACATCCCAAGAAA
TAACAGAAACAGAAGAAGAGGAAGAAACGGATCCGAAACCATCTTACGAT
GAACtgctaaatttttatttaaattggAAAGATATCGTCCCTTACTGTCG
TTGTAAACAAGACTTGGTTTACGGGTTGGATGACTACAGAGACCGTGACA
GCCCAAACTACCCAGCTGCCCATACAATTTACAAGGTATGTCTTTGTgat
ataaaaatttctttgacatTGCATTGCTTAAAATAGTTTACTTgtttgtt
aaaagcaaactaactttttt Run BLAST on NCBI protein sequence of TCONS_00056718-protein >TCONS_00056718-protein ID=TCONS_00056718-protein|Name=TCONS_00056718-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MALSNRPQPMTLPGSQQNSFIFGTSPLALSPEIALTGATNNNLTNTLSGL
TVDQQQSLLQALQAAERVTSQEITETEEEEETDPKPSYDELLNFYLNWKD
IVPYCRCKQDLVYGLDDYRDRDSPNYPAAHTIYKVCLCDIKISLTLHCLK Run BLAST on NCBI transcript from alignment at scaffold_281:418112..419481 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056718 ID=TCONS_00056718|Name=TCONS_00056718|organism=Clytia hemisphaerica|type=transcript|length=1370bp|location=Sequence derived from alignment at scaffold_281:418112..419481 (Clytia hemisphaerica)
aaaaaagttagtttgcttttaacaaacAAGTAAACTATTTTAAGCAATGC
AatgtcaaagaaatttttatatcACAAAGACATACCTTGTAAATTGTATG
GGCAGCTGGGTAGTTTGGGCTGTCACGGTCTCTGTAGTCATCCAACCCGT
AAACCAAGTCTTGTTTACAACGACAGTAAGGGACGATATCTTTccaattt
aaataaaaatttagcaGTTCATCGTAAGATGGTTTCGGATCCGTTTCTTC
CTCTTCTTCTGTTTCTGTTATTTCTTGGGATGTGACTCGTTCAGCCGCTT
GAAGTGCTTGAAGAAGCGATTGTTGTTGGTCCACGGTTAAGCCACTCAAC
GTGTTTGTCAAATTGTTGTTTGTTGCACCAGTCAACGCTATCTCTGGTGA
GAGTGCCAAAGGCGatgttccaaaaatgaatgaattttGCTGAGATCCAG
GTAACGTCATCGGTTGTGGTCGGTTTGATAAAGCCATCGTAGACAACAGA
CgtgaattttgatgaaaatgaaataaagtgaaatgaaattaaatgtcAGA
AACGGTTGCTCagctgatgatgatgatgaaaatgaaataaagtgaAATCA
AATTAATATGTCAGAAACGGTAATTCGGacgaaaaaattcgaaaattcga
TTTCGAGTTCGATTTACCATTGACTGTCAATAAATCGTTCGATCCGAAAT
ATTGACGGTCAATAAATGATTCGATTTCTTTTGACGGTCAAGAAGTTATT
CGAAATATCCCATTGACCGTAAAAATATTATTCTATTAACGATTGACTGT
CAataattttcccatttttatgAAGACTTTTTCAAATCAGTTTTTATCAT
TTCCTAAAAAGACTTTCAGGAAACAAGAcacattttttctgaaaaatatg
aaGACACGTCATGGTTATGCAAAATGAATCCAAGAAATTTGGAAGGTATA
ATAATCTAATACTTAACTTTCTGATGAATATGTTGTGATTATCTTCGTGA
TCTTCGTATCGTAAAATTTATTGTGCTAGCAGCTAGAAAAGCtacttttg
atttgattctgATAAAAATTCATTTCGGTTGCAAAAAAGAaataaaaaaa
tcaaaacattctaaAATGGAACGTCCTCGTTCGACTTGAGATTCGATAAT
GCTAAGGCTCCTCTTACACGGTACATATATTAAATATGTTTATTCTcgca
aaaaaaaatacttttcatcaaaatatcttTCTGTATCTGGCAGGGGGTTG
TTTTAATATCAAAAGAAGGTTTTAATCCAGCCTTAGAATAAGTTTATAAC
TACCTAAGAGTAGAGAAACttataaatttttacaaaaaacgtgtacaggC
GAACATTACCCGGGGCAGGG Coding sequence (CDS) from alignment at scaffold_281:418112..419481 >TCONS_00056718 ID=TCONS_00056718|Name=TCONS_00056718|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_281:418112..419481 (Clytia hemisphaerica)
CTATTTTAAGCAATGCAatgtcaaagaaatttttatatcACAAAGACATA
CCTTGTAAATTGTATGGGCAGCTGGGTAGTTTGGGCTGTCACGGTCTCTG
TAGTCATCCAACCCGTAAACCAAGTCTTGTTTACAACGACAGTAAGGGAC
GATATCTTTccaatttaaataaaaatttagcaGTTCATCGTAAGATGGTT
TCGGATCCGTTTCTTCCTCTTCTTCTGTTTCTGTTATTTCTTGGGATGTG
ACTCGTTCAGCCGCTTGAAGTGCTTGAAGAAGCGATTGTTGTTGGTCCAC
GGTTAAGCCACTCAACGTGTTTGTCAAATTGTTGTTTGTTGCACCAGTCA
ACGCTATCTCTGGTGAGAGTGCCAAAGGCGatgttccaaaaatgaatgaa
ttttGCTGAGATCCAGGTAACGTCATCGGTTGTGGTCGGTTTGATAAAGC
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056718-exon-scaffold_281-1491911889:418112..419481 | TCONS_00056718-exon-scaffold_281-1491911889:418112..419481 | Clytia hemisphaerica | exon |
| TCONS_00056718-exon-scaffold_281-1510915933:418112..419481 | TCONS_00056718-exon-scaffold_281-1510915933:418112..419481 | Clytia hemisphaerica | exon |
| TCONS_00056718-exon-scaffold_281-1575043694:418112..419481 | TCONS_00056718-exon-scaffold_281-1575043694:418112..419481 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_281 | supercontig | scaffold_281:418112..419481 . |
Blast
The following BLAST results are available for this feature:
|
