TCONS_00056717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056717
Unique NameTCONS_00056717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056717 ID=TCONS_00056717|Name=TCONS_00056717|organism=Clytia hemisphaerica|type=transcript|length=526bp
GAAAGAAGCTGATACACTTGGAATCTCCGTTTACAAACACAGGCAAACGC
GGATGCGCAGTAATAAACGGCAACGCAACGAGTTTTCCGAAAGGGAGCTC
AATATCATTGGAGAAGCGGAAGAACTTTTGCAAAACGAAGAAGAGTACCA
GTTACGATCAACCTATCCGCCCAAAATTGAAAACGGCCAACTTGTCGCCA
TCGCATGGAACAAACGCTTGACTTTTGGCCGGGTTTTGGATGATGTTGCA
GAAGGGGAAAACAAACACGTGGACGTAAGCGATATCAAGATGAAAAAGGG
GGGTATTTTAGTATTGGgtggaagaaaaaatatttatacgGCTACTAGCA
CATTTATTATATCAATCGTTCAAGTGGATCAGCAAAATAGGATTATTGAT
TTTGAACAACATGAAAGCCACTACAACGCTTATCACGATAGATTTTTTTC
TGCCTTTGAGTCTGAAGAGTAGTTTCAAAAAGCTCTTCATGATGTTTTag
tccaaaaaataaatcatcTGTCATCC
Run BLAST on NCBI

protein sequence of TCONS_00056717-protein

>TCONS_00056717-protein ID=TCONS_00056717-protein|Name=TCONS_00056717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
KEADTLGISVYKHRQTRMRSNKRQRNEFSERELNIIGEAEELLQNEEEYQ
LRSTYPPKIENGQLVAIAWNKRLTFGRVLDDVAEGENKHVDVSDIKMKKG
GILVLGGRKNIYTATSTFIISIVQVDQQNRIIDFEQHESHYNAYHDRFFS
AFESEE
Run BLAST on NCBI

transcript from alignment at scaffold_281:416826..417351

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056717 ID=TCONS_00056717|Name=TCONS_00056717|organism=Clytia hemisphaerica|type=transcript|length=526bp|location=Sequence derived from alignment at scaffold_281:416826..417351 (Clytia hemisphaerica)
GGATGACAgatgatttattttttggactAAAACATCATGAAGAGCTTTTT
GAAACTACTCTTCAGACTCAAAGGCAGAAAAAAATCTATCGTGATAAGCG
TTGTAGTGGCTTTCATGTTGTTCAAAATCAATAATCCTATTTTGCTGATC
CACTTGAACGATTGATATAATAAATGTGCTAGTAGCcgtataaatatttt
ttcttccacCCAATACTAAAATACCCCCCTTTTTCATCTTGATATCGCTT
ACGTCCACGTGTTTGTTTTCCCCTTCTGCAACATCATCCAAAACCCGGCC
AAAAGTCAAGCGTTTGTTCCATGCGATGGCGACAAGTTGGCCGTTTTCAA
TTTTGGGCGGATAGGTTGATCGTAACTGGTACTCTTCTTCGTTTTGCAAA
AGTTCTTCCGCTTCTCCAATGATATTGAGCTCCCTTTCGGAAAACTCGTT
GCGTTGCCGTTTATTACTGCGCATCCGCGTTTGCCTGTGTTTGTAAACGG
AGATTCCAAGTGTATCAGCTTCTTTC

Coding sequence (CDS) from alignment at scaffold_281:416826..417351

>TCONS_00056717 ID=TCONS_00056717|Name=TCONS_00056717|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_281:416826..417351 (Clytia hemisphaerica)
CTACTCTTCAGACTCAAAGGCAGAAAAAAATCTATCGTGATAAGCGTTGT
AGTGGCTTTCATGTTGTTCAAAATCAATAATCCTATTTTGCTGATCCACT
TGAACGATTGATATAATAAATGTGCTAGTAGCcgtataaatattttttct
tccacCCAATACTAAAATACCCCCCTTTTTCATCTTGATATCGCTTACGT
CCACGTGTTTGTTTTCCCCTTCTGCAACATCATCCAAAACCCGGCCAAAA
GTCAAGCGTTTGTTCCATGCGATGGCGACAAGTTGGCCGTTTTCAATTTT
GGGCGGATAGGTTGATCGTAACTGGTACTCTTCTTCGTTTTGCAAAAGTT
CTTCCGCTTCTCCAATGATATTGAGCTCCCTTTCGGAAAACTCGTTGCGT
TGCCGTTTATTACTGCGCATCCGCGTTTGCCTGTGTTTGTAAACGGAGAT
TCCAAGTGTATCAGCTTCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035734XLOC_035734Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056717-proteinTCONS_00056717-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056717-exon-scaffold_281-1491911889:416826..417351TCONS_00056717-exon-scaffold_281-1491911889:416826..417351Clytia hemisphaericaexon
TCONS_00056717-exon-scaffold_281-1510915933:416826..417351TCONS_00056717-exon-scaffold_281-1510915933:416826..417351Clytia hemisphaericaexon
TCONS_00056717-exon-scaffold_281-1575043694:416826..417351TCONS_00056717-exon-scaffold_281-1575043694:416826..417351Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:416826..417351 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.447669	0.545684	0	0	0.150927	0.238528	0.863323	0.404116	1.60328	0.467275	0.453548	1.78887	1.56308	1.62328	0.826153	1.22759	2.18441	0.947248	0	0.248988	0.865663	0.31668	0.384966	0.34999	1.68225	1.82309	0.306921	0	0	0.12656
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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