TCONS_00056706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056706
Unique NameTCONS_00056706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056706 ID=TCONS_00056706|Name=TCONS_00056706|organism=Clytia hemisphaerica|type=transcript|length=389bp
tcgAAACTGAGCATGAAATTATGACTGATCGTGGTTTCTCAATTCAAGAC
CTTTGCGCCGAGAAAGGGGTTACTTTAAATAGGCCCAAGCAAAAGGAAGA
TGATCAATTTTCTAACACTGAAAATCAGAGGAACTTCGATATTGCGTCGA
CAAGAATTCATGTGGAACGTTTCATTGGACGTGTTCGAAAATGGAAAATT
CTTAATGATATTTGGCCAATGAATCGTGTTGACATTCTGACTTGTGTTTG
GCAAATGTTGTGCCATACTGTAAATCTTTCATGCCCTCCTATTGGTCCAA
AAGAATAAGAGacaagtttttttgattttccaaacaCAACTGTGGTTTTA
TATGTAACTTTACAAAATACCTAAATAACTCTAAATAGG
Run BLAST on NCBI

protein sequence of TCONS_00056706-protein

>TCONS_00056706-protein ID=TCONS_00056706-protein|Name=TCONS_00056706-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
ETEHEIMTDRGFSIQDLCAEKGVTLNRPKQKEDDQFSNTENQRNFDIAST
RIHVERFIGRVRKWKILNDIWPMNRVDILTCVWQMLCHTVNLSCPPIGPK
E
Run BLAST on NCBI

transcript from alignment at scaffold_281:154633..155021

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056706 ID=TCONS_00056706|Name=TCONS_00056706|organism=Clytia hemisphaerica|type=transcript|length=389bp|location=Sequence derived from alignment at scaffold_281:154633..155021 (Clytia hemisphaerica)
CCTATTTAGAGTTATTTAGGTATTTTGTAAAGTTACATATAAAACCACAG
TTGtgtttggaaaatcaaaaaaacttgtCTCTTATTCTTTTGGACCAATA
GGAGGGCATGAAAGATTTACAGTATGGCACAACATTTGCCAAACACAAGT
CAGAATGTCAACACGATTCATTGGCCAAATATCATTAAGAATTTTCCATT
TTCGAACACGTCCAATGAAACGTTCCACATGAATTCTTGTCGACGCAATA
TCGAAGTTCCTCTGATTTTCAGTGTTAGAAAATTGATCATCTTCCTTTTG
CTTGGGCCTATTTAAAGTAACCCCTTTCTCGGCGCAAAGGTCTTGAATTG
AGAAACCACGATCAGTCATAATTTCATGCTCAGTTTcga

Coding sequence (CDS) from alignment at scaffold_281:154633..155021

>TCONS_00056706 ID=TCONS_00056706|Name=TCONS_00056706|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_281:154633..155021 (Clytia hemisphaerica)
TTATTCTTTTGGACCAATAGGAGGGCATGAAAGATTTACAGTATGGCACA
ACATTTGCCAAACACAAGTCAGAATGTCAACACGATTCATTGGCCAAATA
TCATTAAGAATTTTCCATTTTCGAACACGTCCAATGAAACGTTCCACATG
AATTCTTGTCGACGCAATATCGAAGTTCCTCTGATTTTCAGTGTTAGAAA
ATTGATCATCTTCCTTTTGCTTGGGCCTATTTAAAGTAACCCCTTTCTCG
GCGCAAAGGTCTTGAATTGAGAAACCACGATCAGTCATAATTTCATGCTC
AGTTTc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035723XLOC_035723Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056706-proteinTCONS_00056706-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056706-exon-scaffold_281-1491911889:154633..155021TCONS_00056706-exon-scaffold_281-1491911889:154633..155021Clytia hemisphaericaexon
TCONS_00056706-exon-scaffold_281-1510915933:154633..155021TCONS_00056706-exon-scaffold_281-1510915933:154633..155021Clytia hemisphaericaexon
TCONS_00056706-exon-scaffold_281-1575043694:154633..155021TCONS_00056706-exon-scaffold_281-1575043694:154633..155021Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:154633..155021 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.77389	1.53762	0.223165	0.654997	7.97395	8.82157	11.4031	11.8616	3.98619	4.52608	2.19656	3.5442	5.11228	1.90585	2.23838	4.92436	2.95922	3.94304	2.72376	3.28872	3.62076	5.29823	2.71187	4.10914	0	0	8.91862	8.07604	14.876	16.0478
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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