|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056425 ID=TCONS_00056425|Name=TCONS_00056425|organism=Clytia hemisphaerica|type=transcript|length=1374bp
gaatatCTTGTAGATGTTGTAGCAGGTGAAGGTCACGAATACCATAATGA
CGTCACCAGTCAAACTGTATAAAAGGCGTTCGTAAATCTTAATGTTCAAC
ATTAACCAACAAGCAAACATCAAAGCAACAATTATCACAACCAATAACCA
AACAGAATGGCTTCTGCAGGCGCACTTCTCTTAAAACAAAAAGTCCCATT
CGTCATGGAGCTAGACGCTGAAGTTAACGGAATCAGATTCGCAGTCCGGG
GCAAGGGGACAGGGGACGCAACAACTGGCACCATTGAGGCCAAATTCGTA
TGTACCACTGGTGAATTGCCAGTACCTTGGGCTTCAATTTTGAGCACGAT
GTCATATGGAGCTTTCTGTTTTGCTAAATATCCAGACAATATCAAAGATT
TCTTTAAATCAGCCCTTCCTGATGGTTATATTCAAGAAAGGACCATCAGC
TTCGAAAATGATGGCGCTTATAAAGTTCGTGGTGTAATCACTTACGAACA
TGGTTCTATTTATAATCGCGTCACACTTAAAGGACAAGGATTCAAAAAAG
ACGgacacattcttcaaaaacaatACGAATTTTGCTGTCCGAATAATGCA
GTTTACGTTTTGCCGGACAAAGAAAACAACGGACTCCGAGTTGTTTATAA
TAAGACCTACAAATTGAAAGATGGAGGACATCATTTGGCGGCTCACGAAC
AAAAGAATATTCCACTCGGTGGAGGAGTTGTTGATATTCCAAACTATCAT
CATCTTCATGCTGGAAACATCTTCTCGAAAGATCCCGAAGAAACACGAGA
TCACTTGTGTTTGGTCGAAACTATCAGAGCTGTAGATTTAGAAACATACA
ACTAAAAATTTTATTctttaatttaaaactttttatttaacTAGCCATTa
actttgagcttttaaattAAGTTTGaggattttgttttgagagtttaaAC
ATTTTCCCGAAATTTGTCTTCGAATTTCTCCGGGTTTACGGGATAAACAA
CTATCAATTTAACACCTACTCTttattttcccatttttacTTTCGATCCC
TTCAAATAATTTATTATCTACCTTTTTTTATCATACATTAACTATAATAT
TCTTTCGTCTTATAGTAGTAAGTAGCTTTAGATTTTCACAGGGTTTTAGC
CAGGGTTAACATTTGTGTATATTTTCTGACATctttaaaatttagtttta
aaGTGAATTCTTTAATAATATTTctaatctttattttttgtataccaaag
tcgaggggtaaatcacttgaaaaaaggtgtacgatactttttgacttttt
gaattttcatttgactttttgacttttttttgacttttttcaaactttca
ttttgactttttcccgacAAAAAC Run BLAST on NCBI protein sequence of TCONS_00056425-protein >TCONS_00056425-protein ID=TCONS_00056425-protein|Name=TCONS_00056425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MASAGALLLKQKVPFVMELDAEVNGIRFAVRGKGTGDATTGTIEAKFVCT
TGELPVPWASILSTMSYGAFCFAKYPDNIKDFFKSALPDGYIQERTISFE
NDGAYKVRGVITYEHGSIYNRVTLKGQGFKKDGHILQKQYEFCCPNNAVY
VLPDKENNGLRVVYNKTYKLKDGGHHLAAHEQKNIPLGGGVVDIPNYHHL
HAGNIFSKDPEETRDHLCLVETIRAVDLETYN Run BLAST on NCBI transcript from alignment at scaffold_276:227611..232328+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056425 ID=TCONS_00056425|Name=TCONS_00056425|organism=Clytia hemisphaerica|type=transcript|length=4718bp|location=Sequence derived from alignment at scaffold_276:227611..232328+ (Clytia hemisphaerica)
gaatatCTTGTAGATGTTGTAGCAGGTGAAGGTATGAACAATAGTTTTGT
ACCATCTATTATTTTTTGTAAACTTGAAACGAATTTCTAGTatagaattt
ttgactgaagatcgTAACGAAAAGTTGtgtgaaactttgagtatcaaACA
ATTCCAATCTCGACTTCAATTGGGTaatgggtcctactccttaAGTCGGA
ACACTTAGCGCTGTCCAGACACCGCTGGTTCTGTGCACGCGAGACACAGA
TATCATGATGcatataccgtgaaaagcacaagCCAATATCATATATTGAC
CTGTGCCAANTGcatataccgtgaaaagcacaagCCACTATCATATATTA
ACCTGTGCCAgccaatcgagattctattcagcgcgcaatcaacgaggaga
aaagtaaccatgacgaccatccaagatcttggatgaggttcaaagtaGAT
Attttcccgtcgttgaaaacacaactaaaaatgtcattaatgctttttaa
aacgagtcagtgatagagaatcgacatttccataattaaaagtttagtaa
ttactgttatacatttggggatcatgtaaaaatttcttttgaaagaaact
catttcaattacacttgggaGTTTCTGGgaaattcgtaaatagtaaactg
catactgatacagtttgctagacattaatatggtaatatttgctcttcat
ctttgattctttctgcagtgattagattgacacatgcacgataaaatttc
tattattggtcttcagattgattgatactcagggtatggTGCATAGTGAT
GACACTCGAACTACGCGGGAAAGCATATAGCTTATCGCAGGTGCAGAACG
GATGAGTGACACCACACACCGTGATGTCTGGCATATCACCCACACTCGTG
TATCAGAGTAGTGGTGAGCATAgatttgtaaagcccgaagtgctagatat
cgtgcttttgctgaaaagtgtgccgaggttaggtaggaaatgaACTGTTT
TACGTTTTTCGGAAAATtgttctaaattaatgcatcaaaagttatggctg
ttcttctataaaaaattgggatggaaaagtggtcaaaaagcactattttc
aaaattttgaagcaaataagcttttagaaaaattttccaagaaaataatt
ttagttcaATAAAGGATACACCATAtaccgcaaaaaaattttcaaaatgt
tttttcttcgcagaaactaagctcttcaaagttgaaatactcttcacTAC
AAAAGTCTTTTTTTGCTTCTTCATCAGATTTTTTCATtgtgattcttaaa
ttttcagactcaaggataattggcctatcagaatatgtataacatgccac
agttttatgggctacatcaagtagaactttatattttgtaagtggaaaat
attaaaaattcactatagTCAGAGCTCTTAAGCACGCCatctagccattc
gggctttataaatctatggtggTGACCCAGGCAAAGGTGTGTTTACTTAC
GTTCTTTGTCTTAAGAGGTACCAAACAACCTCTTGAAACAATGACCTAAA
CAAGGGGAAGATCGGTTTAAAAGGATTTGTATAAATAATTTTGGGCTTTT
GTTTTGTTGATGTTCTGGGTTGTTATCGGCAAAAGGATTGTTAATCgatt
tatcggcgatccaaaaaatatctgcaatctgattggttaaaaagagtaca
atatatcttgtattttacatgtaaaaatataaattgacgaaaagatgttg
ttgcattgtagcggtagtaagcaatctaacgtcactttgctacaaaagta
ccctgcgcttttttccaacacaaaaagtgcattttttgggtcaccgataa
accagttatcagacatttgctagtacaatatggaaatattttactcgttc
cagattttccgtatattttcctcgcctaaaggctcggaaaatattatacg
gaaaaatctcggaacNCCgtatattttccgagcctttaggctatatattg
tacggaaaaatctcggaactcgtaaaatatttctcatattgtactcgcaa
ctgtccgataactattacgtaaACCCACTGATGTAAAGCATAGATTTATA
AACCCCGAAGTGCTAGATGTCGTGCATTAagttttttcaaccaaaaaaag
tgaataccGCAAAAACATTGCtgttattgttttcgaaaacccacgaaact
tcttattggtcaagcgctgaaattctattgtaatgtcacatgacctaggt
aggatttcttaCTTAACCTCTTCACACGGCATTTTACTCAATCTGATTGA
TGAGGCNGTAGGATTTCTTACTTAACCTCTTCACACGGCTTTTTACTCAA
TCTGATGATTGATGAGGTTGTCATTAATGATTGACAGTGATTGATTTTTC
ATTCCAGATTTTCATTATTGTCTTAACTTGGATACTATTACAGTCACGCA
AatattttttggttaaaaagtgAATCAGGATAAACTAAAATTTTCGCACT
AGGTCACGAATACCATAATGACGTCACCAGTCAAACTGTATAAAAGGCGT
TCGTAAATCTTAATGTTCAACATTAACCAACAAGCAAACATCAAAGCAAC
AATTATCACAACCAATAACCAAACAGAATGGCTTCTGCAGGCGCACTTCT
CTTAAAACAAAAAGTCCCATTCGTCATGGAGCTAGACGCTGAAGTTAACG
GAATCAGATTCGCAGTCCGGGGCAAGGGGACAGGGGACGCAACAACTGGC
ACCATTGAGGCCAAATTCGTATGTACCACTGGTGAATTGCCAGTACCTTG
GGCTTCAATTTTGAGCACGATGTCATATGGAGCTTTGTAAGTAATTAATG
TTCTTTTTGCGCAAtcacagcgcgcgcaagtggagacctaGCCCATTTCT
CATCTGGTCACAGTACAAAGGGTAACATAATAAACAAATTCCTTATGTTA
TAAAAGCTAGGCAATGCGACTAATGTTatgctttttagaaaaatacaccc
ccttctcacagacccggtaagattttttcagccaatggggataaaattaa
cggactgaaactcgatggggattgatattcacatattttttacGAATaag
gatttcaattctttcgttttaaagtcagaaaattcagtggggatgggaaa
aatagtgaatattttgcagtgaggatttgtttatttgatcattttcagtA
AGGATAAAAATAGGATGatgattttccactggggacgatatttggccaat
ttttccagtgggaagagttcccagtgagtctgtgaaaagggggtgtaAAA
ATGCAGGCTTGATAATATAATTACCTGGTCACTGATAAAGAGatgttaaa
aatataaaatctaaAAGCTAAGCAATGCGAATACCAGTCTACATGGACTA
CACTTTTGTTCTTTCAGCTGTTTTGCTAAATATCCAGACAATATCAAAGA
TTTCTTTAAATCAGCCCTTCCTGATGGTTATATTCAAGAAAGGACCATCA
GCTTCGAAAATGATGGCGCTTATAAAGTTCGTGGTGTAATCACTTACGAA
CATGGTTCTATTTATAATCGCGTCACACTTAAAGGACAAGGATTCAAAAA
AGACGgacacattcttcaaaaacaatACGAATTTTGCTGTCCGAATAATG
CAGTTTACGTTTTGCCGGACAAAGAAAACAACGGACTCCGAGTTGTTTAT
AATAAGGTTAGTTTATTCGCCTTTGTCTAATACTTTAATACTTCgaaatt
cttatttatttcaatattgtttgaaaataaaaaacaactagCAACAGCTA
GTCCTCTCAAATTTCGTAATTAAAGGACCATATCAAACCATACCCCCTTG
GAATGAAAATGGACCTGCTCAACAAGGGGTATACagttttttaaaatgaa
aaaggaCTGACCTTGATTTATACCATTTTCTAGCTGATCAATGAGAGAGA
GAGTTGATTTTATATTCATACAATCCTTATCTTTTAACATTCTCACAGAC
CTACAAATTGAAAGATGGAGGACATCATTTGGCGGCTCACGAACAAAAGA
ATATTCCACTCGGTGGAGGAGTTGTTGATATTCCAAACTATCATCATCTT
CATGCTGGAAACATCTTCTCGAAAGATCCCGAAGAAACACGAGATCACTT
GTGTTTGGTCGAAACTATCAGAGCTGTAGATTTAGAAACATACAACTAAA
AATTTTATTctttaatttaaaactttttatttaacTAGCCATTaactttg
agcttttaaattAAGTTTGaggattttgttttgagagtttaaACATTTTC
CCGAAATTTGTCTTCGAATTTCTCCGGGTTTACGGGATAAACAACTATCA
ATTTAACACCTACTCTttattttcccatttttacTTTCGATCCCTTCAAA
TAATTTATTATCTACCTTTTTTTATCATACATTAACTATAATATTCTTTC
GTCTTATAGTAGTAAGTAGCTTTAGATTTTCACAGGGTTTTAGCCAGGGT
TAACATTTGTGTATATTTTCTGACATctttaaaatttagttttaaaGTGA
ATTCTTTAATAATATTTctaatctttattttttgtataccaaagtcgagg
ggtaaatcacttgaaaaaaggtgtacgatactttttgactttttgaattt
tcatttgactttttgacttttttttgacttttttcaaactttcattttga
ctttttcccgacAAAAAC Coding sequence (CDS) from alignment at scaffold_276:227611..232328+ >TCONS_00056425 ID=TCONS_00056425|Name=TCONS_00056425|organism=Clytia hemisphaerica|type=CDS|length=2097bp|location=Sequence derived from alignment at scaffold_276:227611..232328+ (Clytia hemisphaerica)
ATGGCTTCTGCAGGCGCACTTCTCTTAAAACAAAAAGTCCCATTCGTCAT
GGAGCTAGACGCTGAAGTTAACGGAATCAGATTCGCAGTCCGGGGCAAGG
GGACAGGGGACGCAACAACTGGCACCATTGAGGCCAAATTCGTATGTACC
ACTGGTGAATTGCCAGTACCTTGGGCTTCAATTTTGAGCACGATGTCATA
TGGAGCTTTCTGTTTTGCTAAATATCCAGACAATATCAAAGATTTCTTTA
AATCAGCCCTTCCTGATGGTTATATTCAAGAAAGGACCATCAGCTTCGAA
AATGATGGCGCTTATAAAGTTCGTGGTGTAATCACTTACGAACATGGTTC
TATTTATAATCGCGTCACACTTAAAGGACAAGGATTCAAAAAAGACGgac
acattcttcaaaaacaatACGAATTTTGCTGTCCGAATAATGCAGTTTAC
GTTTTGCCGGACAAAGAAAACAACGGACTCCGAGTTGTTTATAATAAGAC
CTACAAATTGAAAGATGGAGGACATCATTTGGCGGCTCACGAACAAAAGA
ATATTCCACTCGGTGGAGGAGTTGTTGATATTCCAAACTATCATCATCTT
CATGCTGGAAACATCTTCTCGAAAGATCCCGAAGAAACACGAGATCACTT
GTGTTTGGTCGAAACTATCAGAGCTGTAGATTTAGAAACATACAACTAAA
TGGCTTCTGCAGGCGCACTTCTCTTAAAACAAAAAGTCCCATTCGTCATG
GAGCTAGACGCTGAAGTTAACGGAATCAGATTCGCAGTCCGGGGCAAGGG
GACAGGGGACGCAACAACTGGCACCATTGAGGCCAAATTCGTATGTACCA
CTGGTGAATTGCCAGTACCTTGGGCTTCAATTTTGAGCACGATGTCATAT
GGAGCTTTCTGTTTTGCTAAATATCCAGACAATATCAAAGATTTCTTTAA
ATCAGCCCTTCCTGATGGTTATATTCAAGAAAGGACCATCAGCTTCGAAA
ATGATGGCGCTTATAAAGTTCGTGGTGTAATCACTTACGAACATGGTTCT
ATTTATAATCGCGTCACACTTAAAGGACAAGGATTCAAAAAAGACGgaca
cattcttcaaaaacaatACGAATTTTGCTGTCCGAATAATGCAGTTTACG
TTTTGCCGGACAAAGAAAACAACGGACTCCGAGTTGTTTATAATAAGACC
TACAAATTGAAAGATGGAGGACATCATTTGGCGGCTCACGAACAAAAGAA
TATTCCACTCGGTGGAGGAGTTGTTGATATTCCAAACTATCATCATCTTC
ATGCTGGAAACATCTTCTCGAAAGATCCCGAAGAAACACGAGATCACTTG
TGTTTGGTCGAAACTATCAGAGCTGTAGATTTAGAAACATACAACTAAAT
GGCTTCTGCAGGCGCACTTCTCTTAAAACAAAAAGTCCCATTCGTCATGG
AGCTAGACGCTGAAGTTAACGGAATCAGATTCGCAGTCCGGGGCAAGGGG
ACAGGGGACGCAACAACTGGCACCATTGAGGCCAAATTCGTATGTACCAC
TGGTGAATTGCCAGTACCTTGGGCTTCAATTTTGAGCACGATGTCATATG
GAGCTTTCTGTTTTGCTAAATATCCAGACAATATCAAAGATTTCTTTAAA
TCAGCCCTTCCTGATGGTTATATTCAAGAAAGGACCATCAGCTTCGAAAA
TGATGGCGCTTATAAAGTTCGTGGTGTAATCACTTACGAACATGGTTCTA
TTTATAATCGCGTCACACTTAAAGGACAAGGATTCAAAAAAGACGgacac
attcttcaaaaacaatACGAATTTTGCTGTCCGAATAATGCAGTTTACGT
TTTGCCGGACAAAGAAAACAACGGACTCCGAGTTGTTTATAATAAGACCT
ACAAATTGAAAGATGGAGGACATCATTTGGCGGCTCACGAACAAAAGAAT
ATTCCACTCGGTGGAGGAGTTGTTGATATTCCAAACTATCATCATCTTCA
TGCTGGAAACATCTTCTCGAAAGATCCCGAAGAAACACGAGATCACTTGT
GTTTGGTCGAAACTATCAGAGCTGTAGATTTAGAAACATACAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056425-exon-scaffold_276-1491911889:227611..227641 | TCONS_00056425-exon-scaffold_276-1491911889:227611..227641 | Clytia hemisphaerica | exon |
| TCONS_00056425-exon-scaffold_276-1510915933:227611..227641 | TCONS_00056425-exon-scaffold_276-1510915933:227611..227641 | Clytia hemisphaerica | exon |
| TCONS_00056425-exon-scaffold_276-1575043694:227611..227641 | TCONS_00056425-exon-scaffold_276-1575043694:227611..227641 | Clytia hemisphaerica | exon |
| TCONS_00056425-exon-scaffold_276-1491911889:230113..230446 | TCONS_00056425-exon-scaffold_276-1491911889:230113..230446 | Clytia hemisphaerica | exon |
| TCONS_00056425-exon-scaffold_276-1510915933:230113..230446 | TCONS_00056425-exon-scaffold_276-1510915933:230113..230446 | Clytia hemisphaerica | exon |
| TCONS_00056425-exon-scaffold_276-1575043694:230113..230446 | TCONS_00056425-exon-scaffold_276-1575043694:230113..230446 | Clytia hemisphaerica | exon |
| TCONS_00056425-exon-scaffold_276-1491911889:231028..231316 | TCONS_00056425-exon-scaffold_276-1491911889:231028..231316 | Clytia hemisphaerica | exon |
| TCONS_00056425-exon-scaffold_276-1510915933:231028..231316 | TCONS_00056425-exon-scaffold_276-1510915933:231028..231316 | Clytia hemisphaerica | exon |
| TCONS_00056425-exon-scaffold_276-1575043694:231028..231316 | TCONS_00056425-exon-scaffold_276-1575043694:231028..231316 | Clytia hemisphaerica | exon |
| TCONS_00056425-exon-scaffold_276-1491911889:231609..232328 | TCONS_00056425-exon-scaffold_276-1491911889:231609..232328 | Clytia hemisphaerica | exon |
| TCONS_00056425-exon-scaffold_276-1510915933:231609..232328 | TCONS_00056425-exon-scaffold_276-1510915933:231609..232328 | Clytia hemisphaerica | exon |
| TCONS_00056425-exon-scaffold_276-1575043694:231609..232328 | TCONS_00056425-exon-scaffold_276-1575043694:231609..232328 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:227611..232328 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006091 | generation of precursor metabolites and energy |
| GO:0008218 | bioluminescence |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008218 |
bioluminescence |
| biological_process |
GO:0006091 |
generation of precursor metabolites and energy |
Blast
The following BLAST results are available for this feature:
|
