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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056419 ID=TCONS_00056419|Name=TCONS_00056419|organism=Clytia hemisphaerica|type=transcript|length=908bp
GCAAAGACTCGCTaaagaagaagcagaaaagcaaagaaTTGCTGCTGAAG
AAGCAGAAAGGCAGAGACTCGCCgaagaagaagcagaaaagcaaagactt
gctgagcaagaagcagaaaagcaaaaatttgctgCAGAAGAAGCTGAGAT
AGAAAGGGCTTCTCTAGATTCCACAGTGAACGAAGTTTTGGAAGACCTCT
TTTCAAAGGTGGAGGACTCGTTAGAGCAAGAAAACCAAGGAGAAAATACG
CCTTCAAATAATGGTATCCATGTTGAAGAAACCGATGCTAAGGTTAATGT
CCCTCAAAAAGTTGAAGAACTTGATTCCAGAATGAAAGCTGGAATTTCTG
AAGAAAGCAAACAAATTGAGGATGTTCCTCAAACAAGTGAAGAAGTTTCA
CAAACAGTCGAAGAAGTTGTGTCCAAAGTCGAAGAGGGAACTTCAGAAGA
AAGCAAGCCAACAGAAGAAATTTCACAAACAGTCGAAGAACTTATGTCCA
AAGTCGAAGAGGAAACTTCAGAAGAAAGCAAGCCAACTGAAGAAGTTTCA
GAAACAGTGGAAGAACTTGTGTCCAAAATCGAAGAGGAAACTTCAGAAGA
AATCAAACCAACAGAAGAAGTTTCTCAAACAGTCGAAGAACTTGTCTCTA
AAGTCGAAGAGGAAACTTTTGAAGAAAGCAAACCAACAAAAGAAGTTTCC
CAAACAGTCGAAGAACTTGTCTTTAAAGTCGAAGAGGAAACTTCTGAAGA
AAGTAAGCCAACGGAAGAAGTTTCACAAACAGTCGAAGAACTTGTCTCTA
AAGTCGAAGAGGAAACTTCAGAAGAAAGCAAGCCAACAGAAGATGTTTCA
CAAACAGTCGAAGAACTTGTCGCTAAAGTCGAAGAGGAAACTTCTGAAGA
AAGCAAGC Run BLAST on NCBI protein sequence of TCONS_00056419-protein >TCONS_00056419-protein ID=TCONS_00056419-protein|Name=TCONS_00056419-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
QRLAKEEAEKQRIAAEEAERQRLAEEEAEKQRLAEQEAEKQKFAAEEAEI
ERASLDSTVNEVLEDLFSKVEDSLEQENQGENTPSNNGIHVEETDAKVNV
PQKVEELDSRMKAGISEESKQIEDVPQTSEEVSQTVEEVVSKVEEGTSEE
SKPTEEISQTVEELMSKVEEETSEESKPTEEVSETVEELVSKIEEETSEE
IKPTEEVSQTVEELVSKVEEETFEESKPTKEVSQTVEELVFKVEEETSEE
SKPTEEVSQTVEELVSKVEEETSEESKPTEDVSQTVEELVAKVEEETSEE
SK Run BLAST on NCBI transcript from alignment at scaffold_276:154084..155504+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056419 ID=TCONS_00056419|Name=TCONS_00056419|organism=Clytia hemisphaerica|type=transcript|length=1421bp|location=Sequence derived from alignment at scaffold_276:154084..155504+ (Clytia hemisphaerica)
GCAAAGACTCGCTaaagaagaagcagaaaagcaaagaaTTGCTGCTGAAG
AAGCAGAAAGGCAGAGACTCGCCgaagaagaagcagaaaagcaaagactt
gctgagcaagaagcagaaaagcaaaaatttgctgCAGAAGAAGCTGAGAT
AGAAAGGGCTTCTCTAGATTCCACAGTGAACGAAGTTTTGGAAGACCTCT
TTTCAAAGGTGGAGGACTCGTTAGAGCAAGAAAACCAAGGAGAAAATACG
CCTTCAAATAATGGTATCCATGTTGAAGAAACCGATGCTAAGGTTAATGT
CCCTCAAAAAGTTGAAGAACTTGATTCCAGAATGAAAGCTGGAATTTCTG
AAGAAAGCAAACAAATTGAGGATGTTCCTCAAACAAGTGAAGAAGTTTCA
CAAACAGTCGAAGAAGTTGTGTCCAAAGTCGAAGAGGGAACATCTGATGA
AAGTGAGCCAACAGAAGAAGTTTCACAAACAGTCGAAGAATTTGTCTCTA
AAGTCGAAGAAGAAATATCTGAGGAAAGCAAACCAACTGAAGAGGTTTCA
GAAGCAGTCGAAGAACTTGTGTCCAAAGTCGAAGAAGAAACTTCTGAAGA
AAGCAAACCAAATGAGGATGTTCCTCAAGCAGATGAAGTGGTTTCACAAA
CAGTTGAAGAACTTCTCTTTAAAGTTGAAGAGGAAACTTTAGAAGAAAGC
AAGCCAACAGAAGAAATTTCACAAACAGTTGAAAAAGTTTCAGAAACAGT
CGAAGAACTCGTGTCCAAAGTCGACTTAGAAACTTCTGAAGAAAGCAAAC
caagagaaaaagtttttcaaacagATGAAGAAGTTTCACAAACAGTCGAT
GAACTTGTGTCTAATGTTGAAGAGGAAACTTCAGAAGAAAGCAAGTCAAC
GGAAGAAGTTTCACAAACAGTCGAAGAACTTGTCTCTAATGTTGAACAGG
AAACTTCAGAAGAAAGCAAGCCAACAGAAGAAATTTCACAAACAGTCGAA
GAACTTATGTCCAAAGTCGAAGAGGAAACTTCAGAAGAAAGCAAGCCAAC
TGAAGAAGTTTCAGAAACAGTGGAAGAACTTGTGTCCAAAATCGAAGAGG
AAACTTCAGAAGAAATCAAACCAACAGAAGAAGTTTCTCAAACAGTCGAA
GAACTTGTCTCTAAAGTCGAAGAGGAAACTTTTGAAGAAAGCAAACCAAC
AAAAGAAGTTTCCCAAACAGTCGAAGAACTTGTCTTTAAAGTCGAAGAGG
AAACTTCTGAAGAAAGTAAGCCAACGGAAGAAGTTTCACAAACAGTCGAA
GAACTTGTCTCTAAAGTCGAAGAGGAAACTTCAGAAGAAAGCAAGCCAAC
AGAAGATGTTTCACAAACAGTCGAAGAACTTGTCGCTAAAGTCGAAGAGG
AAACTTCTGAAGAAAGCAAGC Coding sequence (CDS) from alignment at scaffold_276:154084..155504+ >TCONS_00056419 ID=TCONS_00056419|Name=TCONS_00056419|organism=Clytia hemisphaerica|type=CDS|length=1812bp|location=Sequence derived from alignment at scaffold_276:154084..155504+ (Clytia hemisphaerica)
CAAAGACTCGCTaaagaagaagcagaaaagcaaagaaTTGCTGCTGAAGA
AGCAGAAAGGCAGAGACTCGCCgaagaagaagcagaaaagcaaagacttg
ctgagcaagaagcagaaaagcaaaaatttgctgCAGAAGAAGCTGAGATA
GAAAGGGCTTCTCTAGATTCCACAGTGAACGAAGTTTTGGAAGACCTCTT
TTCAAAGGTGGAGGACTCGTTAGAGCAAGAAAACCAAGGAGAAAATACGC
CTTCAAATAATGGTATCCATGTTGAAGAAACCGATGCTAAGGTTAATGTC
CCTCAAAAAGTTGAAGAACTTGATTCCAGAATGAAAGCTGGAATTTCTGA
AGAAAGCAAACAAATTGAGGATGTTCCTCAAACAAGTGAAGAAGTTTCAC
AAACAGTCGAAGAAGTTGTGTCCAAAGTCGAAGAGGGAACTTCAGAAGAA
AGCAAGCCAACAGAAGAAATTTCACAAACAGTCGAAGAACTTATGTCCAA
AGTCGAAGAGGAAACTTCAGAAGAAAGCAAGCCAACTGAAGAAGTTTCAG
AAACAGTGGAAGAACTTGTGTCCAAAATCGAAGAGGAAACTTCAGAAGAA
ATCAAACCAACAGAAGAAGTTTCTCAAACAGTCGAAGAACTTGTCTCTAA
AGTCGAAGAGGAAACTTTTGAAGAAAGCAAACCAACAAAAGAAGTTTCCC
AAACAGTCGAAGAACTTGTCTTTAAAGTCGAAGAGGAAACTTCTGAAGAA
AGTAAGCCAACGGAAGAAGTTTCACAAACAGTCGAAGAACTTGTCTCTAA
AGTCGAAGAGGAAACTTCAGAAGAAAGCAAGCCAACAGAAGATGTTTCAC
AAACAGTCGAAGAACTTGTCGCTAAAGTCGAAGAGGAAACTTCTGAAGAA
AGCAAGCAAAGACTCGCTaaagaagaagcagaaaagcaaagaaTTGCTGC
TGAAGAAGCAGAAAGGCAGAGACTCGCCgaagaagaagcagaaaagcaaa
gacttgctgagcaagaagcagaaaagcaaaaatttgctgCAGAAGAAGCT
GAGATAGAAAGGGCTTCTCTAGATTCCACAGTGAACGAAGTTTTGGAAGA
CCTCTTTTCAAAGGTGGAGGACTCGTTAGAGCAAGAAAACCAAGGAGAAA
ATACGCCTTCAAATAATGGTATCCATGTTGAAGAAACCGATGCTAAGGTT
AATGTCCCTCAAAAAGTTGAAGAACTTGATTCCAGAATGAAAGCTGGAAT
TTCTGAAGAAAGCAAACAAATTGAGGATGTTCCTCAAACAAGTGAAGAAG
TTTCACAAACAGTCGAAGAAGTTGTGTCCAAAGTCGAAGAGGGAACTTCA
GAAGAAAGCAAGCCAACAGAAGAAATTTCACAAACAGTCGAAGAACTTAT
GTCCAAAGTCGAAGAGGAAACTTCAGAAGAAAGCAAGCCAACTGAAGAAG
TTTCAGAAACAGTGGAAGAACTTGTGTCCAAAATCGAAGAGGAAACTTCA
GAAGAAATCAAACCAACAGAAGAAGTTTCTCAAACAGTCGAAGAACTTGT
CTCTAAAGTCGAAGAGGAAACTTTTGAAGAAAGCAAACCAACAAAAGAAG
TTTCCCAAACAGTCGAAGAACTTGTCTTTAAAGTCGAAGAGGAAACTTCT
GAAGAAAGTAAGCCAACGGAAGAAGTTTCACAAACAGTCGAAGAACTTGT
CTCTAAAGTCGAAGAGGAAACTTCAGAAGAAAGCAAGCCAACAGAAGATG
TTTCACAAACAGTCGAAGAACTTGTCGCTAAAGTCGAAGAGGAAACTTCT
GAAGAAAGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056419-exon-scaffold_276-1491911889:154084..154524 | TCONS_00056419-exon-scaffold_276-1491911889:154084..154524 | Clytia hemisphaerica | exon |
| TCONS_00056419-exon-scaffold_276-1510915933:154084..154524 | TCONS_00056419-exon-scaffold_276-1510915933:154084..154524 | Clytia hemisphaerica | exon |
| TCONS_00056419-exon-scaffold_276-1575043694:154084..154524 | TCONS_00056419-exon-scaffold_276-1575043694:154084..154524 | Clytia hemisphaerica | exon |
| TCONS_00056419-exon-scaffold_276-1491911889:155038..155504 | TCONS_00056419-exon-scaffold_276-1491911889:155038..155504 | Clytia hemisphaerica | exon |
| TCONS_00056419-exon-scaffold_276-1510915933:155038..155504 | TCONS_00056419-exon-scaffold_276-1510915933:155038..155504 | Clytia hemisphaerica | exon |
| TCONS_00056419-exon-scaffold_276-1575043694:155038..155504 | TCONS_00056419-exon-scaffold_276-1575043694:155038..155504 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:154084..155504 + |
Blast
The following BLAST results are available for this feature:
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