TCONS_00056352 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056352
Unique NameTCONS_00056352
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length617

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056352 ID=TCONS_00056352|Name=TCONS_00056352|organism=Clytia hemisphaerica|type=transcript|length=617bp
GGACAATAATTGCAGATATGATCATTCCAAAGCTAATGTCACAATATCAG
GTTATGAAGATATTCCCTTTGCGGATGAAACGGAACAAGTCGCTGCTTTA
AATGACCATGGTCCAATTTCAGTTTGCGTTGATGCTGGTCATCTTTCATT
CCAACTTTATTCGAGCGGAGTTTTTTATGACCCGAACTGTGATCCCTTTT
CAATCAATCACGCAGTAATTGCTGTCGGCTTTGGTAGTGAAGGTGGTTCT
GATTATTggattatcaaaaatagTTGGGGAACTGGCTGGGGTGACGATGG
ATATATGAAAGTCTCACGAAATCGAAACAACCATTGTGGCATTGCAACAC
AATCTTGCTATCCTATCATATAATAAATAATTAAAGAAAGGATAGAAAAG
ACAAACAATATCCACATTTCGATATCAATGGAAATGAATGGATATGAATG
GAAAAAAACAGTAACGAAAATAATATTTGTTTCatatttaaatttcattt
cgtTTTCAGTCGGAAAGTATAATTTTTTAATTGNAAAAACAGTAACGAAA
ATAATATTTGTTTCatatttaaatttcatttcgtTTTCAGTCGGAAAgta
taattttttaattgatc
Run BLAST on NCBI

protein sequence of TCONS_00056352-protein

>TCONS_00056352-protein ID=TCONS_00056352-protein|Name=TCONS_00056352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
DNNCRYDHSKANVTISGYEDIPFADETEQVAALNDHGPISVCVDAGHLSF
QLYSSGVFYDPNCDPFSINHAVIAVGFGSEGGSDYWIIKNSWGTGWGDDG
YMKVSRNRNNHCGIATQSCYPII
Run BLAST on NCBI

transcript from alignment at scaffold_273:243497..244462+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056352 ID=TCONS_00056352|Name=TCONS_00056352|organism=Clytia hemisphaerica|type=transcript|length=966bp|location=Sequence derived from alignment at scaffold_273:243497..244462+ (Clytia hemisphaerica)
GGACAATAATTGCAGATATGATCATTCCAAAGCTAATGTCACAATATCAG
GTTATGAAGATATTCCCTTTGCGGATGAAACGGAACAAGTCGCTGCTTTA
AATGACCATGGTCCAATTTCAGTTTGCGTTGATGCTGGTCATCTTTCATT
CCAACTTTATTCGAGCGGAGTTTTTTATGACCCGAACTGTGATCCCTTTT
CAATCAATCACGCAGTAATTGCTGTCGGCTTTGGTAGTGAAGGTGGTTCT
GATTATTggattatcaaaaataggttaGTTTCGACGATTATATTTGTAAG
GCATAACATCAACATTTATCCAAtcaaaaagtgctgacgtcatcCTATTC
TTGGAGACTTACCTTCTGGattttttccctaaatttttaTGCTTGAAAGG
CAAAAGGTTCtgaaatataatattttgaatttatatAGTCCGATTTTTCT
ATCTTTTGCTCACTCagcattttaaaacaaaataatttctctGCACACCC
AAGTTCTTTTGTAATTTGTGATGAGTCAGCtatcattttcagaattttgc
aTCGGATACATTTAAGAGACATTGATTTTAAATTGAGTTCGCTTATCAGG
TCTTTCCTATCTTTTTTTACAGTTGGGGAACTGGCTGGGGTGACGATGGA
TATATGAAAGTCTCACGAAATCGAAACAACCATTGTGGCATTGCAACACA
ATCTTGCTATCCTATCATATAATAAATAATTAAAGAAAGGATAGAAAAGA
CAAACAATATCCACATTTCGATATCAATGGAAATGAATGGATATGAATGG
AAAAAAACAGTAACGAAAATAATATTTGTTTCatatttaaatttcatttc
gtTTTCAGTCGGAAAGTATAATTTTTTAATTGNAAAAACAGTAACGAAAA
TAATATTTGTTTCatatttaaatttcatttcgtTTTCAGTCGGAAAgtat
aattttttaattgatc

Coding sequence (CDS) from alignment at scaffold_273:243497..244462+

>TCONS_00056352 ID=TCONS_00056352|Name=TCONS_00056352|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_273:243497..244462+ (Clytia hemisphaerica)
GACAATAATTGCAGATATGATCATTCCAAAGCTAATGTCACAATATCAGG
TTATGAAGATATTCCCTTTGCGGATGAAACGGAACAAGTCGCTGCTTTAA
ATGACCATGGTCCAATTTCAGTTTGCGTTGATGCTGGTCATCTTTCATTC
CAACTTTATTCGAGCGGAGTTTTTTATGACCCGAACTGTGATCCCTTTTC
AATCAATCACGCAGTAATTGCTGTCGGCTTTGGTAGTGAAGGTGGTTCTG
ATTATTggattatcaaaaatagTTGGGGAACTGGCTGGGGTGACGATGGA
TATATGAAAGTCTCACGAAATCGAAACAACCATTGTGGCATTGCAACACA
ATCTTGCTATCCTATCATATAAGACAATAATTGCAGATATGATCATTCCA
AAGCTAATGTCACAATATCAGGTTATGAAGATATTCCCTTTGCGGATGAA
ACGGAACAAGTCGCTGCTTTAAATGACCATGGTCCAATTTCAGTTTGCGT
TGATGCTGGTCATCTTTCATTCCAACTTTATTCGAGCGGAGTTTTTTATG
ACCCGAACTGTGATCCCTTTTCAATCAATCACGCAGTAATTGCTGTCGGC
TTTGGTAGTGAAGGTGGTTCTGATTATTggattatcaaaaatagTTGGGG
AACTGGCTGGGGTGACGATGGATATATGAAAGTCTCACGAAATCGAAACA
ACCATTGTGGCATTGCAACACAATCTTGCTATCCTATCATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035504XLOC_035504Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056352-proteinTCONS_00056352-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056352-exon-scaffold_273-1491911889:243497..243769TCONS_00056352-exon-scaffold_273-1491911889:243497..243769Clytia hemisphaericaexon
TCONS_00056352-exon-scaffold_273-1510915933:243497..243769TCONS_00056352-exon-scaffold_273-1510915933:243497..243769Clytia hemisphaericaexon
TCONS_00056352-exon-scaffold_273-1575043694:243497..243769TCONS_00056352-exon-scaffold_273-1575043694:243497..243769Clytia hemisphaericaexon
TCONS_00056352-exon-scaffold_273-1491911889:244119..244462TCONS_00056352-exon-scaffold_273-1491911889:244119..244462Clytia hemisphaericaexon
TCONS_00056352-exon-scaffold_273-1510915933:244119..244462TCONS_00056352-exon-scaffold_273-1510915933:244119..244462Clytia hemisphaericaexon
TCONS_00056352-exon-scaffold_273-1575043694:244119..244462TCONS_00056352-exon-scaffold_273-1575043694:244119..244462Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_273supercontigscaffold_273:243497..244462 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.126992	0.557011	0	0	2.34418	1.77051	0.386866	0.748655	0.332317	0.731979	0	0.845065	24.2113	23.4427	1.13225	1.38554	1.9304	4.98998	0.835885	0.991268	0.123752	0.320001	0.0330136	0.332795	0	0	0.119233	0.334577	0	0.098332
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000668Peptidase_C1A_C
IPR025661Pept_asp_AS
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0008234 cysteine-type peptidase activity
Blast
[Close]
BLAST of TCONS_00056352 vs. Swiss-Prot (Human)
Match: CATS (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 1.027e-33
Identity = 55/121 (45.45%), Postives = 81/121 (66.94%), Query Frame = 2 
Query:    2 DNNCRYDHSKANVTISGYEDIPFADETEQVAALNDHGPISVCVDAGHLSFQLYSSGVFYDPNCDPFSINHAVIAVGFGSEGGSDYWIIKNSWGTGWGDDGYMKVSRNRNNHCGIATQSCYP 364
            D  C+YD      T S Y ++P+  E     A+ + GP+SV VDA H SF LY SGV+Y+P+C   ++NH V+ VG+G   G +YW++KNSWG  +G++GY++++RN+ NHCGIA+   YP
Sbjct:  210 DQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 329
The following BLAST results are available for this feature:
BLAST of TCONS_00056352 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CATS1.027e-3345.45Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
back to top