TCONS_00054784 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054784
Unique NameTCONS_00054784
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2222

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054784 ID=TCONS_00054784|Name=TCONS_00054784|organism=Clytia hemisphaerica|type=transcript|length=2222bp
TTCTTTCTTTAGTTATCTCGGGTTATCAATACAAAAACACACAAAAGCTa
ataaaaactaagaaaaatgTTATTGGGGGTCTTATTGATCCATTTCCTTT
GTTCCATAACTAAAGTCGATACACAAGGGACATGTGGTTCAACACTAACA
CGATCAGAAGGCACACTAAGCTCATTAGCACCCTACAGAAGAGGTCGAGA
TTGTTATTGGGACATCAAAGGAGATTTCTTCACAACTTACATCAAGTTAA
CCTGGTCAAAATTCGTAGTGGATGGTGTTATGCCGTCCTGTGGCAACGAT
TACGTTGAAGTTTATAAGGCTGATTCAAAcTGCCGAAAGCTTGAAAAACT
TGTACGATTTTGCTCGAACAATTTAGTTGGACATTTACCACATGATGTTT
ATGCTTACAATGCAAGGTGTTTGAAAATTCACCTTCATTCATCAAGCAAA
GATTCATCCAAAGATACAGGATTTGTAGCCGGCTACAGTTTGATAAGTGG
TAACATCCCTGTCACATCTACTACTGTCTGTAAAAGAGAGACTAAGGTAC
AGAACGATTTCGGTGTCATCACTTCACCGCAATGGCCCAAAGCATACGAA
AAGTCCAACCTACCAAAATATAGATATGATTGTGAATGGGATATCAAGTC
AGAGAAAGATGAACTTATTCAAGTCAACGTGATGGACACTGAGTTTGACG
GATCTGCAAGTGGATATTGCTCTTACAAGAATCGATTGTATCTTAATGGT
GAGAAGTCGGTGATTAAATCTAACGCATATCGTAAAACGATTTGTTCCAG
TCCTGTACCCTTCACGTGGTCTTCCGAATATTATAAAGTAGAAATCGAAT
TGAAAGGATGGTACCAGCCCTCTCAACCGAGACGTGGTTTTGCGATTGGG
TTCGTCAAATACAGAGATGAGACAGCAGCAACGCGAGCTCAACTCAGCAT
GATTCTCGGTATCACGTTTGTCGCCGTTATGGTCATCATTGCCATCGGTT
GTTTCATCAAGCGTTGCAAAGCACGGCGTGTTACGTATAATTCCGTCACC
TACAACCGTGATGATAACCAAGCCGTCATTGATCCGGGCACGACTTCATC
AACGACGGCTGTTATTGCTGACCCTAATCTACCGCTCACCGTGAATTTGG
AAAAGAACAATATTCCTTTCAATCCGCCTAGTTATCAATCTGTCAGTAAT
TATCCACAAGATGCGCCTCCACCATACCCAGGACCACCCACAAGAATAGA
TGCAGAAGACACCACAAACCTACCACCTGTTCAACAGCTACCTTACCCGC
CCAATCAACAACCACCCGCTCCTTATCCGCCCAATCCGCAAATGGTTTAT
CCGCCGCCCTATCCACCACCAACACAATAAGACGTgttttattgttgttg
gttttattTGAGTTGGAGTGGTTGTAATATTATATCTTTGCTCACTAATA
AAGAAGTGCATCATTTTTGTATCATTCTTTTTTTGATATAATGCATGAAA
AGGAAATGGGTTCGAGTTTACCTCGGAGGAATATTTTATTGGAATGATGT
TTACCAGTAAACTTTGTTTGGTTTATGATGTCTTAAGAAAAATAATACGA
TACAACTCCTGGAAAGAGTTTTAATCTTCAAGATTTTAACGTATTTCGTA
CTCAGAACATTTTACAGATGTTGAAAACAGTTGAGTATAACAGAATTGCT
GAATTATCTAATACACGATGTGATTGGTGTTTCACTTAGGGCactttttt
aaataatcttttttaaataaaatttattataacattgtagatttttattt
tgaaatatatgtattttcatttttgagtaCTGCTGTAAAAAATTGGATGT
TTCATACTATTTATACTTTGTCACTGTAAGAATTGAACCTGCCATTAGGT
TATTATGCTTTTTCTATTTATactagaaattttcattttatatctaaaat
ttatttgaaatacATATACAGTTTACtcttgctaattcgaacttAAACTC
TAATTCACTTGAATTACAGTGAGCCGAATTGCAGTGAGATTCCAATGTAG
AaattattcaataaaattttcacaCTGGAAGGGATTTACTTTTAGAGGGA
TTCGAATAAAGTTAAAGCTCACTGTATTGTGAAACTGAAATTGCAATAAC
CTCACGTGGTGAGCAGAACAATATTCGAACGCCGTTTGACTTCCTTTTCT
CGACTTGAAACTTGAAGTTTTG
Run BLAST on NCBI

protein sequence of TCONS_00054784-protein

>TCONS_00054784-protein ID=TCONS_00054784-protein|Name=TCONS_00054784-protein|organism=Clytia hemisphaerica|type=polypeptide|length=437bp
MLLGVLLIHFLCSITKVDTQGTCGSTLTRSEGTLSSLAPYRRGRDCYWDI
KGDFFTTYIKLTWSKFVVDGVMPSCGNDYVEVYKADSNCRKLEKLVRFCS
NNLVGHLPHDVYAYNARCLKIHLHSSSKDSSKDTGFVAGYSLISGNIPVT
STTVCKRETKVQNDFGVITSPQWPKAYEKSNLPKYRYDCEWDIKSEKDEL
IQVNVMDTEFDGSASGYCSYKNRLYLNGEKSVIKSNAYRKTICSSPVPFT
WSSEYYKVEIELKGWYQPSQPRRGFAIGFVKYRDETAATRAQLSMILGIT
FVAVMVIIAIGCFIKRCKARRVTYNSVTYNRDDNQAVIDPGTTSSTTAVI
ADPNLPLTVNLEKNNIPFNPPSYQSVSNYPQDAPPPYPGPPTRIDAEDTT
NLPPVQQLPYPPNQQPPAPYPPNPQMVYPPPYPPPTQ
Run BLAST on NCBI

transcript from alignment at scaffold_245:671788..679206+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054784 ID=TCONS_00054784|Name=TCONS_00054784|organism=Clytia hemisphaerica|type=transcript|length=7419bp|location=Sequence derived from alignment at scaffold_245:671788..679206+ (Clytia hemisphaerica)
TTCTTTCTTTAGTTATCTCGGGTTATCAATACAAAAACACACAAAAGCTa
ataaaaactaagaaaaatgTTATTGGGGGTCTTATTGATCCATTTCCTTT
GTTCCATAACTAAAGTCGATACACAAGGGACATGTGGTTCAACACTAACA
CGATCAGAAGGCACACTAAGCTCATTAGCACCCTACAGAAGAGGTCGAGA
TTGTTATTGGGACATCAAAGGAGATTTCTTCACAACTTACATCAAGTTAA
CCTGGTCAAAATTCGTAGTGGATGGTGTTATGCCGTCCTGTGGCAACGAT
TACGTTGAAGTTTATAAGGCTGATTCAAAGTAAGTTTAAAGCATCTTTAA
CAAACATCATGAGTAATTTAAATTATTTAgatatttattatttaaaaact
gTAAATTATCTGGACCACTTtatttggacctaccccggtggaggtcctat
aaattaacctgtgtttgttcgttcgtccgtccgtccgttcgttcgttcgt
ccgtccgttcgtctgttaccaacttttctcaggattgaatcataggaatc
ttttgatttttggtacaaaggtgcaaaatggtagtggccaaaatgtgacg
gagcccgattttcgaaaaaaaaaattttggggcaaatttgggccaaaaaa
cggctaaaaaacgggttttttggacttgatgaaaaattggatcattaatt
ttttctgattttttgcatgaaagtagggtaccatcataggtaaaagatgg
ctcaaacagattttcgcaaaaaaaatttgttggtgcaaaaaacgcatgtt
tatctataagaatcactattaataagcatacatcaatgttcttagtcaaa
ttactcaattttgttatgaattagatgttttttttgctcatgagggctta
cttttgaagaatttgtgtgtttagacatgaaattttggttgctgggcgtg
tttttatagaaaaactggccaaattcgNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TGGACtttatgaaaaattggatcattaattttttctgactttttgcttga
aagtagggtaccatcataggtaaaagatggctgaagcagaattttgcaaa
aaaattttgtttgctcaaaaaacgcatgtttatctataagaatcactatt
atttttcatacatcaatgttcttagttaaattactcaatttttttaataa
gatagatgttttttattgctcatgagggcttacttttaaagaatatgtgt
gtttagacatgaacttttggttgcttggcgtgtttttatagaaaaactgg
ccaaattcaatatttttttataagcacattacttaggtattagcttttct
cgagattggctttttcattttttatgattttttgcacaaagatgcataac
tataaaccctcgaatgtgacggagctcgtttcttgaaaaaacaattttga
ggtaaatttcagctaaaaaacggctaaaaaaagggttttttgatggatca
ttatttttttttggactttttgcatgaaagtaggtaaaagatggctcaag
cagatttttgtaaaaaaaattttcagctcaaaaaacgcatccttatctat
aagaatcactgttaataagcatacatcaatgttcttaaaattactgaatt
ttttgatgagatatgtttttttctcacgaagtcttgaatatgaaagaata
ttccaagagcatgaaattttggtttctaaacgtttttttataataaacaa
acgactaattttaatagatcgccactatttgtgttctgaatgattgttta
atggtcacgctcacgtagatatcaattatatatgtgttaaatgcataacc
aggtaggtccataaaagtatcacttgttattaacaaaaaactatttgtat
tatcttttttcagcTGCCGAAAGCTTGAAAAACTTGTACGATTTTGCTCG
AACAATTTAGTTGGACATTTACCACATGATGTTTATGCTTACAATGCAAG
GTGTTTGAAAATTCACCTTCATTCATCAAGCAAAGATTCATCCAAAGATA
CAGGATTTGTAGCCGGCTACAGTTTGATAAGTGGTAACATCCCTGTCACA
TCTACTACTGTCTGTAAAAGGTATGTTTTTTTCTCTCATCAAGATCTTTA
TTATGAACAAATCAATCAGTCAATCACCAAAGAGGAAAGTGGTGCTTTCA
GAGGTCGAAAAGGGGGTTATCGTTTATTGGAAAATCTATTTGTTAAACAC
CTAACCAAATATGTTTTAACAAAAGTCTGTCATTCCTAGTTTTCGGAAAT
GAATAATCTTATTAAACTCATATCATTCATTTTTCGACGCTTAAACATTC
AACTTGATAAAGACAACCGTCGAAACGTCACATgcttagtatatgtaatc
acatgataacgatatgtaatcacatgataacgagtgcaattcgagaataa
ttgcacgagtgatttttttgttattaattttccgagtccgaaaggaattg
tacgagttattatgtgattacgagctaatcgcacaatggctttcactact
ttttcccagttaggaaagtaaattatagaaattacacttaaggttttata
tttttctcttctctctgtgtctttcttttaatgttgtttattgattttgt
ttttcacaaaataaatttcgaatccaattaaaacgttcgatgtaaaaaaa
aatgtaagaaaaaactttaaaatcaattttgtaaacattggcgcggcatt
gaagagtgtgattaacgattaattgctctctacaggatgcaattaacgat
taattgctctctacaggatgcaattaacgattaattgcgcTCTACAGGAT
GTAAAATGATTTTGAGAGCTGGtgttgagggcgtgccaaataagaaaaaa
taacccatcgtgcgattaatgTTAAACTTCTATTTTTGACACAAATctac
tttcaaaaaaaagaaatcaaattgaCTTTTACGTTTGTTTATTAAACTCA
TAGAGAGACTAAGGTACAGAACGATTTCGGTGTCATCACTTCACCGCAAT
GGCCCAAAGCATACGAAAAGTCCAACCTACCAAAATATAGATATGATTGT
GAATGGGATATCAAGTCAGAGAAAGATGAACTTATTCAAGTCAACGTGAT
GGACACTGAGTTTGACGGATCTGCAAGTGGATATTGCTCTTACAAGAATC
GATTGTATCTTAATGGTAAGACGACATTATTGATCTTTGAAGACTAAGTG
GTATGGTGGTCATCATTTTCGGCCCATTCCTAGGCGACCCGAATTCAATT
CCCACCGTGGTACCTTCGACTCACTTGGCAAGTGAGTGTAACTTTGCCCG
GGTTAACCAATACTATGTAAGGGAAATAGGGTACCACTGCTTTGATACAA
TAGCGTGGGTAGATATGTCAGACATTGTGATGTGATTACATTCATGTGTA
AGGTTGCTAATTATCAAGCACGGGATCAAGCATCATGATACGTGAGGGTC
GCTTACACAGGATCAGTACCGCCTGTAGTAGCGCTATGAGACATTCCTAC
TTGAAAGAGAGGAACTCCTGCTTCCAAAGGAGTAGGAACCATTCTGGTAA
CCTGGAGATGTAATATCTATCTCTTCATTGTCTTTGTTCGTTTATTTTTA
CACAGCTTCCTTGACttaacattttttataaaattccttTCCCAAATTAC
TTTTCTTATCGTTAAAGACCTGTTACTGATGTCAAATATGTatcatttct
tttataagaaatacaGCTCTCCAAATAATAAAGTGGGTCCCATCTGctgt
aattttaaaaattatgattaTGTTGGTACagtaaaaagattttcaggTTT
AACTCATATCTGAAAAACGTTCAATTCATACTAGGTGAGAAGTCGGTGAT
TAAATCTAACGCATATCGTAAAACGATTTGTTCCAGTCCTGTACCCTTCA
CGTGGTCTTCCGAATATTATAAAGTAGAAATCGAATTGAAAGGATGGTAC
CAGCCCTCTCAACCGAGACGTGGTTTTGCGATTGGGTTCGTCAAATACAG
AGATGGTAagagaaaaatttgttttttttttctctcacgAACGTGTCCTT
TTGGCCCTCTctttaagcatcctctatagtGTCCTCTTTTTTCAAAGATG
TGAAGATAATTTGCAGCTTTTCTATCGAAACGTTAAagattttataaaat
ttaactTGTAGTAAAGAGGGTTTTGCGAAATTCGGTAGAAAGAGGTAAAA
TGGTAATGGTTCAACATACAAAATAATATTGTAAACTTCTactttaatac
aataatgaccggttagtgagggctgtactgagaaatattgcccgaggtca
agtaacgaccgagcttgcgaggttgttacGTCGACcaagggcaatatttt
cagtacagcccgaaaaaaacggtcattattgtatttgttaaccgtttcct
tcagcttcgattgatttttagcgctttatccaggaaaaatagcgaaataa
agtgGAAAACACAAGCGAAAagatatcaaaaattgttataatataacaat
agcgttcagtttgaggtcgttgttgttattttctgcccgcgcagtttgat
tattagcccgagagtgtcatttgggaccgacgcgaagcggagggcgcaaa
tggtactagagggctaataatcaaactgcaagggcagaattaatgacaat
aACGAACGAAAGCTTAACGCCATTACTATTATTGTCCATATCGgaaattc
aaacaacgtttttttctagcgtcagccaagtcttttcgcttcaatgcaat
gacttcaacaagttttgagtaccctTGCAAGCGGGCCGCANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcagcgcgggtatgact
atttgagtcatagaacctttcaataccgcccgccgttcgaatctttaatg
gcttacttaatgaccgctatatggataataatttctgacgtcagaaatta
aaaaaaaaagtgacatCACAATGagttttcctaacgacgggcaactctgg
gcagtgtaggcccgtcgtcatgcaaaaagaaccaattgcattgcgcaaaa
agccgtgtagcccgctttaaaaaagtaaccggttaacaatgagAAATAAA
GGAATAACTTACAATTTCTGCGTGGTGTTTCCTATTGGTGCAATCTTCAG
GCAATGCAGTGTATTGTAGATTGAAGATGACGCAAGCTTTAAACACGGTG
CAGCAATTGTAtgttagttctttatttctcaatGTTTCGCTCGAATTTTT
TTGAGAGAATTGAAAGAATTGTTTGACCTCTCTTGTGATTCTATCCATTC
CACTAAATTCaacttctttgattttttacaGAGACAGCAGCAACGCGAGC
TCAACTCAGCATGATTCTCGGTATCACGTTTGTCGCCGTTATGGTCATCA
TTGCCATCGGTTGTTTCATCAAGCGTTGCAAAGCACGGCGTGTTACGTAT
AATTCCGTCACCTACAACCGTGATGATAACCAAGCCGTCATTGATCCGGG
CACGACTTCATCAACGACGGCTGTTATTGCTGACCCTAATCTACCGCTCA
CCGTGAATTTGGAAAAGAACAATATTCCTTTCAATCCGCCTAGTTATCAA
TCTGTCAGTAATTATCCACAAGGTATTAATTCTTAATTGCTTCtttgaac
ttgatttttttatttttcacatttgaaCTTCAATACATTATTATTCTCTT
GTTTTAGATGCGCCTCCACCATACCCAGGACCACCCACAAGAATAGATGC
AGAAGACACCACAAACCTACCACCTGTTCAACAGCTACCTTACCCGCCCA
ATCAACAACCACCCGCTCCTTATCCGCCCAATCCGCAAATGGTTTATCCG
CCGCCCTATCCACCACCAACACAATAAGACGTgttttattgttgttggtt
ttattTGAGTTGGAGTGGTTGTAATATTATATCTTTGCTCACTAATAAAG
AAGTGCATCATTTTTGTATCATTCTTTTTTTGATATAATGCATGAAAAGG
AAATGGGTTCGAGTTTACCTCGGAGGAATATTTTATTGGAATGATGTTTA
CCAGTAAACTTTGTTTGGTTTATGATGTCTTAAGAAAAATAATACGATAC
AACTCCTGGAAAGAGTTTTAATCTTCAAGATTTTAACGTATTTCGTACTC
AGAACATTTTACAGATGTTGAAAACAGTTGAGTATAACAGAATTGCTGAA
TTATCTAATACACGATGTGATTGGTGTTTCACTTAGGGCacttttttaaa
taatcttttttaaataaaatttattataacattgtagatttttattttga
aatatatgtattttcatttttgagtaCTGCTGTAAAAAATTGGATGTTTC
ATACTATTTATACTTTGTCACTGTAAGAATTGAACCTGCCATTAGGTTAT
TATGCTTTTTCTATTTATactagaaattttcattttatatctaaaattta
tttgaaatacATATACAGTTTACtcttgctaattcgaacttAAACTCTAA
TTCACTTGAATTACAGTGAGCCGAATTGCAGTGAGATTCCAATGTAGAaa
ttattcaataaaattttcacaCTGGAAGGGATTTACTTTTAGAGGGATTC
GAATAAAGTTAAAGCTCACTGTATTGTGAAACTGAAATTGCAATAACCTC
ACGTGGTGAGCAGAACAATATTCGAACGCCGTTTGACTTCCTTTTCTCGA
CTTGAAACTTGAAGTTTTG

Coding sequence (CDS) from alignment at scaffold_245:671788..679206+

>TCONS_00054784 ID=TCONS_00054784|Name=TCONS_00054784|organism=Clytia hemisphaerica|type=CDS|length=7884bp|location=Sequence derived from alignment at scaffold_245:671788..679206+ (Clytia hemisphaerica)
atgTTATTGGGGGTCTTATTGATCCATTTCCTTTGTTCCATAACTAAAGT
CGATACACAAGGGACATGTGGTTCAACACTAACACGATCAGAAGGCACAC
TAAGCTCATTAGCACCCTACAGAAGAGGTCGAGATTGTTATTGGGACATC
AAAGGAGATTTCTTCACAACTTACATCAAGTTAACCTGGTCAAAATTCGT
AGTGGATGGTGTTATGCCGTCCTGTGGCAACGATTACGTTGAAGTTTATA
AGGCTGATTCAAAcTGCCGAAAGCTTGAAAAACTTGTACGATTTTGCTCG
AACAATTTAGTTGGACATTTACCACATGATGTTTATGCTTACAATGCAAG
GTGTTTGAAAATTCACCTTCATTCATCAAGCAAAGATTCATCCAAAGATA
CAGGATTTGTAGCCGGCTACAGTTTGATAAGTGGTAACATCCCTGTCACA
TCTACTACTGTCTGTAAAAGAGAGACTAAGGTACAGAACGATTTCGGTGT
CATCACTTCACCGCAATGGCCCAAAGCATACGAAAAGTCCAACCTACCAA
AATATAGATATGATTGTGAATGGGATATCAAGTCAGAGAAAGATGAACTT
ATTCAAGTCAACGTGATGGACACTGAGTTTGACGGATCTGCAAGTGGATA
TTGCTCTTACAAGAATCGATTGTATCTTAATGGTGAGAAGTCGGTGATTA
AATCTAACGCATATCGTAAAACGATTTGTTCCAGTCCTGTACCCTTCACG
TGGTCTTCCGAATATTATAAAGTAGAAATCGAATTGAAAGGATGGTACCA
GCCCTCTCAACCGAGACGTGGTTTTGCGATTGGGTTCGTCAAATACAGAG
ATGAGACAGCAGCAACGCGAGCTCAACTCAGCATGATTCTCGGTATCACG
TTTGTCGCCGTTATGGTCATCATTGCCATCGGTTGTTTCATCAAGCGTTG
CAAAGCACGGCGTGTTACGTATAATTCCGTCACCTACAACCGTGATGATA
ACCAAGCCGTCATTGATCCGGGCACGACTTCATCAACGACGGCTGTTATT
GCTGACCCTAATCTACCGCTCACCGTGAATTTGGAAAAGAACAATATTCC
TTTCAATCCGCCTAGTTATCAATCTGTCAGTAATTATCCACAAGATGCGC
CTCCACCATACCCAGGACCACCCACAAGAATAGATGCAGAAGACACCACA
AACCTACCACCTGTTCAACAGCTACCTTACCCGCCCAATCAACAACCACC
CGCTCCTTATCCGCCCAATCCGCAAATGGTTTATCCGCCGCCCTATCCAC
CACCAACACAATAAatgTTATTGGGGGTCTTATTGATCCATTTCCTTTGT
TCCATAACTAAAGTCGATACACAAGGGACATGTGGTTCAACACTAACACG
ATCAGAAGGCACACTAAGCTCATTAGCACCCTACAGAAGAGGTCGAGATT
GTTATTGGGACATCAAAGGAGATTTCTTCACAACTTACATCAAGTTAACC
TGGTCAAAATTCGTAGTGGATGGTGTTATGCCGTCCTGTGGCAACGATTA
CGTTGAAGTTTATAAGGCTGATTCAAAcTGCCGAAAGCTTGAAAAACTTG
TACGATTTTGCTCGAACAATTTAGTTGGACATTTACCACATGATGTTTAT
GCTTACAATGCAAGGTGTTTGAAAATTCACCTTCATTCATCAAGCAAAGA
TTCATCCAAAGATACAGGATTTGTAGCCGGCTACAGTTTGATAAGTGGTA
ACATCCCTGTCACATCTACTACTGTCTGTAAAAGAGAGACTAAGGTACAG
AACGATTTCGGTGTCATCACTTCACCGCAATGGCCCAAAGCATACGAAAA
GTCCAACCTACCAAAATATAGATATGATTGTGAATGGGATATCAAGTCAG
AGAAAGATGAACTTATTCAAGTCAACGTGATGGACACTGAGTTTGACGGA
TCTGCAAGTGGATATTGCTCTTACAAGAATCGATTGTATCTTAATGGTGA
GAAGTCGGTGATTAAATCTAACGCATATCGTAAAACGATTTGTTCCAGTC
CTGTACCCTTCACGTGGTCTTCCGAATATTATAAAGTAGAAATCGAATTG
AAAGGATGGTACCAGCCCTCTCAACCGAGACGTGGTTTTGCGATTGGGTT
CGTCAAATACAGAGATGAGACAGCAGCAACGCGAGCTCAACTCAGCATGA
TTCTCGGTATCACGTTTGTCGCCGTTATGGTCATCATTGCCATCGGTTGT
TTCATCAAGCGTTGCAAAGCACGGCGTGTTACGTATAATTCCGTCACCTA
CAACCGTGATGATAACCAAGCCGTCATTGATCCGGGCACGACTTCATCAA
CGACGGCTGTTATTGCTGACCCTAATCTACCGCTCACCGTGAATTTGGAA
AAGAACAATATTCCTTTCAATCCGCCTAGTTATCAATCTGTCAGTAATTA
TCCACAAGATGCGCCTCCACCATACCCAGGACCACCCACAAGAATAGATG
CAGAAGACACCACAAACCTACCACCTGTTCAACAGCTACCTTACCCGCCC
AATCAACAACCACCCGCTCCTTATCCGCCCAATCCGCAAATGGTTTATCC
GCCGCCCTATCCACCACCAACACAATAAatgTTATTGGGGGTCTTATTGA
TCCATTTCCTTTGTTCCATAACTAAAGTCGATACACAAGGGACATGTGGT
TCAACACTAACACGATCAGAAGGCACACTAAGCTCATTAGCACCCTACAG
AAGAGGTCGAGATTGTTATTGGGACATCAAAGGAGATTTCTTCACAACTT
ACATCAAGTTAACCTGGTCAAAATTCGTAGTGGATGGTGTTATGCCGTCC
TGTGGCAACGATTACGTTGAAGTTTATAAGGCTGATTCAAAcTGCCGAAA
GCTTGAAAAACTTGTACGATTTTGCTCGAACAATTTAGTTGGACATTTAC
CACATGATGTTTATGCTTACAATGCAAGGTGTTTGAAAATTCACCTTCAT
TCATCAAGCAAAGATTCATCCAAAGATACAGGATTTGTAGCCGGCTACAG
TTTGATAAGTGGTAACATCCCTGTCACATCTACTACTGTCTGTAAAAGAG
AGACTAAGGTACAGAACGATTTCGGTGTCATCACTTCACCGCAATGGCCC
AAAGCATACGAAAAGTCCAACCTACCAAAATATAGATATGATTGTGAATG
GGATATCAAGTCAGAGAAAGATGAACTTATTCAAGTCAACGTGATGGACA
CTGAGTTTGACGGATCTGCAAGTGGATATTGCTCTTACAAGAATCGATTG
TATCTTAATGGTGAGAAGTCGGTGATTAAATCTAACGCATATCGTAAAAC
GATTTGTTCCAGTCCTGTACCCTTCACGTGGTCTTCCGAATATTATAAAG
TAGAAATCGAATTGAAAGGATGGTACCAGCCCTCTCAACCGAGACGTGGT
TTTGCGATTGGGTTCGTCAAATACAGAGATGAGACAGCAGCAACGCGAGC
TCAACTCAGCATGATTCTCGGTATCACGTTTGTCGCCGTTATGGTCATCA
TTGCCATCGGTTGTTTCATCAAGCGTTGCAAAGCACGGCGTGTTACGTAT
AATTCCGTCACCTACAACCGTGATGATAACCAAGCCGTCATTGATCCGGG
CACGACTTCATCAACGACGGCTGTTATTGCTGACCCTAATCTACCGCTCA
CCGTGAATTTGGAAAAGAACAATATTCCTTTCAATCCGCCTAGTTATCAA
TCTGTCAGTAATTATCCACAAGATGCGCCTCCACCATACCCAGGACCACC
CACAAGAATAGATGCAGAAGACACCACAAACCTACCACCTGTTCAACAGC
TACCTTACCCGCCCAATCAACAACCACCCGCTCCTTATCCGCCCAATCCG
CAAATGGTTTATCCGCCGCCCTATCCACCACCAACACAATAAatgTTATT
GGGGGTCTTATTGATCCATTTCCTTTGTTCCATAACTAAAGTCGATACAC
AAGGGACATGTGGTTCAACACTAACACGATCAGAAGGCACACTAAGCTCA
TTAGCACCCTACAGAAGAGGTCGAGATTGTTATTGGGACATCAAAGGAGA
TTTCTTCACAACTTACATCAAGTTAACCTGGTCAAAATTCGTAGTGGATG
GTGTTATGCCGTCCTGTGGCAACGATTACGTTGAAGTTTATAAGGCTGAT
TCAAAcTGCCGAAAGCTTGAAAAACTTGTACGATTTTGCTCGAACAATTT
AGTTGGACATTTACCACATGATGTTTATGCTTACAATGCAAGGTGTTTGA
AAATTCACCTTCATTCATCAAGCAAAGATTCATCCAAAGATACAGGATTT
GTAGCCGGCTACAGTTTGATAAGTGGTAACATCCCTGTCACATCTACTAC
TGTCTGTAAAAGAGAGACTAAGGTACAGAACGATTTCGGTGTCATCACTT
CACCGCAATGGCCCAAAGCATACGAAAAGTCCAACCTACCAAAATATAGA
TATGATTGTGAATGGGATATCAAGTCAGAGAAAGATGAACTTATTCAAGT
CAACGTGATGGACACTGAGTTTGACGGATCTGCAAGTGGATATTGCTCTT
ACAAGAATCGATTGTATCTTAATGGTGAGAAGTCGGTGATTAAATCTAAC
GCATATCGTAAAACGATTTGTTCCAGTCCTGTACCCTTCACGTGGTCTTC
CGAATATTATAAAGTAGAAATCGAATTGAAAGGATGGTACCAGCCCTCTC
AACCGAGACGTGGTTTTGCGATTGGGTTCGTCAAATACAGAGATGAGACA
GCAGCAACGCGAGCTCAACTCAGCATGATTCTCGGTATCACGTTTGTCGC
CGTTATGGTCATCATTGCCATCGGTTGTTTCATCAAGCGTTGCAAAGCAC
GGCGTGTTACGTATAATTCCGTCACCTACAACCGTGATGATAACCAAGCC
GTCATTGATCCGGGCACGACTTCATCAACGACGGCTGTTATTGCTGACCC
TAATCTACCGCTCACCGTGAATTTGGAAAAGAACAATATTCCTTTCAATC
CGCCTAGTTATCAATCTGTCAGTAATTATCCACAAGATGCGCCTCCACCA
TACCCAGGACCACCCACAAGAATAGATGCAGAAGACACCACAAACCTACC
ACCTGTTCAACAGCTACCTTACCCGCCCAATCAACAACCACCCGCTCCTT
ATCCGCCCAATCCGCAAATGGTTTATCCGCCGCCCTATCCACCACCAACA
CAATAAatgTTATTGGGGGTCTTATTGATCCATTTCCTTTGTTCCATAAC
TAAAGTCGATACACAAGGGACATGTGGTTCAACACTAACACGATCAGAAG
GCACACTAAGCTCATTAGCACCCTACAGAAGAGGTCGAGATTGTTATTGG
GACATCAAAGGAGATTTCTTCACAACTTACATCAAGTTAACCTGGTCAAA
ATTCGTAGTGGATGGTGTTATGCCGTCCTGTGGCAACGATTACGTTGAAG
TTTATAAGGCTGATTCAAAcTGCCGAAAGCTTGAAAAACTTGTACGATTT
TGCTCGAACAATTTAGTTGGACATTTACCACATGATGTTTATGCTTACAA
TGCAAGGTGTTTGAAAATTCACCTTCATTCATCAAGCAAAGATTCATCCA
AAGATACAGGATTTGTAGCCGGCTACAGTTTGATAAGTGGTAACATCCCT
GTCACATCTACTACTGTCTGTAAAAGAGAGACTAAGGTACAGAACGATTT
CGGTGTCATCACTTCACCGCAATGGCCCAAAGCATACGAAAAGTCCAACC
TACCAAAATATAGATATGATTGTGAATGGGATATCAAGTCAGAGAAAGAT
GAACTTATTCAAGTCAACGTGATGGACACTGAGTTTGACGGATCTGCAAG
TGGATATTGCTCTTACAAGAATCGATTGTATCTTAATGGTGAGAAGTCGG
TGATTAAATCTAACGCATATCGTAAAACGATTTGTTCCAGTCCTGTACCC
TTCACGTGGTCTTCCGAATATTATAAAGTAGAAATCGAATTGAAAGGATG
GTACCAGCCCTCTCAACCGAGACGTGGTTTTGCGATTGGGTTCGTCAAAT
ACAGAGATGAGACAGCAGCAACGCGAGCTCAACTCAGCATGATTCTCGGT
ATCACGTTTGTCGCCGTTATGGTCATCATTGCCATCGGTTGTTTCATCAA
GCGTTGCAAAGCACGGCGTGTTACGTATAATTCCGTCACCTACAACCGTG
ATGATAACCAAGCCGTCATTGATCCGGGCACGACTTCATCAACGACGGCT
GTTATTGCTGACCCTAATCTACCGCTCACCGTGAATTTGGAAAAGAACAA
TATTCCTTTCAATCCGCCTAGTTATCAATCTGTCAGTAATTATCCACAAG
ATGCGCCTCCACCATACCCAGGACCACCCACAAGAATAGATGCAGAAGAC
ACCACAAACCTACCACCTGTTCAACAGCTACCTTACCCGCCCAATCAACA
ACCACCCGCTCCTTATCCGCCCAATCCGCAAATGGTTTATCCGCCGCCCT
ATCCACCACCAACACAATAAatgTTATTGGGGGTCTTATTGATCCATTTC
CTTTGTTCCATAACTAAAGTCGATACACAAGGGACATGTGGTTCAACACT
AACACGATCAGAAGGCACACTAAGCTCATTAGCACCCTACAGAAGAGGTC
GAGATTGTTATTGGGACATCAAAGGAGATTTCTTCACAACTTACATCAAG
TTAACCTGGTCAAAATTCGTAGTGGATGGTGTTATGCCGTCCTGTGGCAA
CGATTACGTTGAAGTTTATAAGGCTGATTCAAAcTGCCGAAAGCTTGAAA
AACTTGTACGATTTTGCTCGAACAATTTAGTTGGACATTTACCACATGAT
GTTTATGCTTACAATGCAAGGTGTTTGAAAATTCACCTTCATTCATCAAG
CAAAGATTCATCCAAAGATACAGGATTTGTAGCCGGCTACAGTTTGATAA
GTGGTAACATCCCTGTCACATCTACTACTGTCTGTAAAAGAGAGACTAAG
GTACAGAACGATTTCGGTGTCATCACTTCACCGCAATGGCCCAAAGCATA
CGAAAAGTCCAACCTACCAAAATATAGATATGATTGTGAATGGGATATCA
AGTCAGAGAAAGATGAACTTATTCAAGTCAACGTGATGGACACTGAGTTT
GACGGATCTGCAAGTGGATATTGCTCTTACAAGAATCGATTGTATCTTAA
TGGTGAGAAGTCGGTGATTAAATCTAACGCATATCGTAAAACGATTTGTT
CCAGTCCTGTACCCTTCACGTGGTCTTCCGAATATTATAAAGTAGAAATC
GAATTGAAAGGATGGTACCAGCCCTCTCAACCGAGACGTGGTTTTGCGAT
TGGGTTCGTCAAATACAGAGATGAGACAGCAGCAACGCGAGCTCAACTCA
GCATGATTCTCGGTATCACGTTTGTCGCCGTTATGGTCATCATTGCCATC
GGTTGTTTCATCAAGCGTTGCAAAGCACGGCGTGTTACGTATAATTCCGT
CACCTACAACCGTGATGATAACCAAGCCGTCATTGATCCGGGCACGACTT
CATCAACGACGGCTGTTATTGCTGACCCTAATCTACCGCTCACCGTGAAT
TTGGAAAAGAACAATATTCCTTTCAATCCGCCTAGTTATCAATCTGTCAG
TAATTATCCACAAGATGCGCCTCCACCATACCCAGGACCACCCACAAGAA
TAGATGCAGAAGACACCACAAACCTACCACCTGTTCAACAGCTACCTTAC
CCGCCCAATCAACAACCACCCGCTCCTTATCCGCCCAATCCGCAAATGGT
TTATCCGCCGCCCTATCCACCACCAACACAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034507XLOC_034507Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054784-proteinTCONS_00054784-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054784-exon-scaffold_245-1491911889:671788..672116TCONS_00054784-exon-scaffold_245-1491911889:671788..672116Clytia hemisphaericaexon
TCONS_00054784-exon-scaffold_245-1510915933:671788..672116TCONS_00054784-exon-scaffold_245-1510915933:671788..672116Clytia hemisphaericaexon
TCONS_00054784-exon-scaffold_245-1575043694:671788..672116TCONS_00054784-exon-scaffold_245-1575043694:671788..672116Clytia hemisphaericaexon
TCONS_00054784-exon-scaffold_245-1491911889:674001..674207TCONS_00054784-exon-scaffold_245-1491911889:674001..674207Clytia hemisphaericaexon
TCONS_00054784-exon-scaffold_245-1510915933:674001..674207TCONS_00054784-exon-scaffold_245-1510915933:674001..674207Clytia hemisphaericaexon
TCONS_00054784-exon-scaffold_245-1575043694:674001..674207TCONS_00054784-exon-scaffold_245-1575043694:674001..674207Clytia hemisphaericaexon
TCONS_00054784-exon-scaffold_245-1491911889:675091..675302TCONS_00054784-exon-scaffold_245-1491911889:675091..675302Clytia hemisphaericaexon
TCONS_00054784-exon-scaffold_245-1510915933:675091..675302TCONS_00054784-exon-scaffold_245-1510915933:675091..675302Clytia hemisphaericaexon
TCONS_00054784-exon-scaffold_245-1575043694:675091..675302TCONS_00054784-exon-scaffold_245-1575043694:675091..675302Clytia hemisphaericaexon
TCONS_00054784-exon-scaffold_245-1491911889:675972..676142TCONS_00054784-exon-scaffold_245-1491911889:675972..676142Clytia hemisphaericaexon
TCONS_00054784-exon-scaffold_245-1510915933:675972..676142TCONS_00054784-exon-scaffold_245-1510915933:675972..676142Clytia hemisphaericaexon
TCONS_00054784-exon-scaffold_245-1575043694:675972..676142TCONS_00054784-exon-scaffold_245-1575043694:675972..676142Clytia hemisphaericaexon
TCONS_00054784-exon-scaffold_245-1491911889:677819..678109TCONS_00054784-exon-scaffold_245-1491911889:677819..678109Clytia hemisphaericaexon
TCONS_00054784-exon-scaffold_245-1510915933:677819..678109TCONS_00054784-exon-scaffold_245-1510915933:677819..678109Clytia hemisphaericaexon
TCONS_00054784-exon-scaffold_245-1575043694:677819..678109TCONS_00054784-exon-scaffold_245-1575043694:677819..678109Clytia hemisphaericaexon
TCONS_00054784-exon-scaffold_245-1491911889:678195..679206TCONS_00054784-exon-scaffold_245-1491911889:678195..679206Clytia hemisphaericaexon
TCONS_00054784-exon-scaffold_245-1510915933:678195..679206TCONS_00054784-exon-scaffold_245-1510915933:678195..679206Clytia hemisphaericaexon
TCONS_00054784-exon-scaffold_245-1575043694:678195..679206TCONS_00054784-exon-scaffold_245-1575043694:678195..679206Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:671788..679206 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.3314	27.5499	19.596	17.5512	16.8748	12.6774	21.4579	22.5706	18.8319	25.2948	27.4979	17.2309	12.6825	11.0894	7.5758	9.36507	10.2272	11.3369	10.8851	15.3898	13.5469	13.8139	24.8353	26.0695	11.6184	14.0169	19.019	14.1851	22.8675	24.0956
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000859CUB_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054784 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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