|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054782 ID=TCONS_00054782|Name=TCONS_00054782|organism=Clytia hemisphaerica|type=transcript|length=1977bp
TGACCTGTGAAACTTTCCCTGATTAAATGCCCTTTTTGTACAttccaaat
tatttttgaaaaaatacactTAGAGGTCCTTTAAAGTTTCTTAAAACGAA
TTTGATGTTTTAACAAGAGTCGAGATAATTATCTTTGCAAAAAACAAGAG
GTTTTTGTAGTAAGAGAAAGAGAGAACGATTATCATAGCATAGCACTGAC
GTCTAAGTTGTTATGACAACCTAAATCATAAATATTTATGATAAGTCTTT
TGTCAATGATTGTTCAAAGACAATAGCTTCCTTATAAGGCACAATACGGT
TGGAAAATAAGACAGAAACCATAAAACTGGGAAACGAGAACGAAAAGTTC
AGTTCATGAATAGAGCGAGAGAGTTCGGTCAAGTTCGTTTTTGAAAAGTC
GGCAGCGGATATTAGACTAAGTGAAACATTTACAGATGACCTGGAGCGCG
AATATGATTCCACTAAATGATGGAACAGATTTGAGGGTTTCTTCTATGAT
CGATCGCATACCTAATCTACCATGCTCAGATTCACAAGTATCTTGTATGC
CAGATGAAAAAGTTTACACATCACAACAAATCACCGTCAATAGCTCAACT
CCGAATAACGAAGACTGGCGAACGACTTTGAATGAGATGGACGTATACCT
TGCTGAGGACGAATTCACTCgtcaaaatgttttcaacaGATCACCAAATA
AACCAGTTTGTCTACCTACTTCAACCATTGTTTCAACACGCCAGCGACGC
CCATCCGTCGGCCGTGTGGAAGAATTTTGCAGTGAAAGCGAAAGTGATTC
TTCTTCTACAACATACGATGAACCAATGCATGAAAGCAATTCCCTCATAG
AACACGAGCAAACACCAATGGGAAGCCCTGTTTTTCACTGTGCTTCAAAC
ACCGTCAAAACAGAAGTACCTCCGACTTATTTCGAAAGTATGAAATGTGA
GCCCACCAGCCCTTCAACCATTTTTACCTCCACCACGACACTTTTCTCAC
AAAAACTTAACAATACAACATCTTCTCTACAAAAATCATTCATCAATCAA
CCTCCAATCAACGTTCGTCCGCCACCTTACCTAGATGCAGCCACTATGGC
TGCTAAACGTCAAACATATCGACAAACAATACCTACAACGAGAGCATTTC
CCATCAACTTTAGTTGTGCTCCACTTAGAGACACTCAAAGtgaaatcatc
aaaaataagaaaacacaTAGATGCGATTATCCAAACTGCAATAAAGTATA
CACAAAATCGTCGCACTTGAAAGCTCATTTCCGTACACATACCGGTGAAA
AACCGTACGAATGTCAATGGGAAGGCTGTGATTGGAAGTTTGCTCGATCT
GACGAGCTGACGAGGCATTATCGTAAACATACTGGCGACAAACCATTCAA
ATGTGCACATTGCGATAAAGCTTTTTCACGATCAGATCACTTAGCTCTTC
ACAATAGAAAGCATACCAACCAAAACCATTAAAATGAAAACGATGAATGa
tgaaaaaacaataaaacgaAAAATTAAGCTGGATTTGATTTTAGTTTCTT
AGAAGTTTGACAAAATGTACTTTGTTGCTTTATGCAACTCTCCTTATTTT
CGAGGTTGGGCGGAGAGCCCGCGATGCCTTCTTTGTGTTCTGGTTTCTCC
GCCCTCCCGCCATAGTTAGTATTTTTCTGTTTAAAAGTTTATATTGTATA
TAGTATAGAGTATGAAAAAGCAAACCTTAATGAACATTTTTGTAAGTATT
TGTACATAACAACAAAATCgagaattttttcttataacaaaacttTAACG
CAGATATTATAAATAGATTTTATGAGCCACTACACTGCTACCACAGCAGT
TAGTCAAAATAACTTACTTTGtttcaaaatagaaatagaaaattgaagaa
atgaaaaataagtttgttatTTACATCCTTAACTCTGGTCATTCCCGCCC
CAGCGaaacaatttatttttgtcCCTC Run BLAST on NCBI protein sequence of TCONS_00054782-protein >TCONS_00054782-protein ID=TCONS_00054782-protein|Name=TCONS_00054782-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
MTWSANMIPLNDGTDLRVSSMIDRIPNLPCSDSQVSCMPDEKVYTSQQIT
VNSSTPNNEDWRTTLNEMDVYLAEDEFTRQNVFNRSPNKPVCLPTSTIVS
TRQRRPSVGRVEEFCSESESDSSSTTYDEPMHESNSLIEHEQTPMGSPVF
HCASNTVKTEVPPTYFESMKCEPTSPSTIFTSTTTLFSQKLNNTTSSLQK
SFINQPPINVRPPPYLDAATMAAKRQTYRQTIPTTRAFPINFSCAPLRDT
QSEIIKNKKTHRCDYPNCNKVYTKSSHLKAHFRTHTGEKPYECQWEGCDW
KFARSDELTRHYRKHTGDKPFKCAHCDKAFSRSDHLALHNRKHTNQNH Run BLAST on NCBI transcript from alignment at scaffold_245:472582..476329+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054782 ID=TCONS_00054782|Name=TCONS_00054782|organism=Clytia hemisphaerica|type=transcript|length=3748bp|location=Sequence derived from alignment at scaffold_245:472582..476329+ (Clytia hemisphaerica)
TGACCTGTGAAACTTTCCCTGATTAAATGCCCTTTTTGTACAttccaaat
tatttttgaaaaaatacactTAGAGGTCCTTTAAAGTTTCTTAAAACGAA
TTTGATGTTTTAACAAGAGTCGAGATAATTATCTTTGCAAAAAACAAGAG
GTTTTTGTAGTAAGAGAAAGAGAGAACGATTATCATAGCATAGCACTGAC
GTCTAAGTTGTTATGACAACCTAAATCATAAATATTTATGATAAGTCTTT
TGTCAATGATTGTTCAAAGACAATAGCTTCCTTATAAGGCACAATACGGT
TGGAAAATAAGACAGAAACCATAAAACTGGGAAACGAGAACGAAAAGTTC
AGTTCATGAATAGAGCGAGAGAGTTCGGTCAAGTTCGTTTTTGAAAAGTC
GGCAGCGGATATTAGACTAAGTGAAACATTTACAGATGACCTGGAGCGCG
AATATGATTCCACTAAATGATGGAACAGATTTGAGGGTTTCTTCTATGAT
CGATCGCATACCTAATCTACCATGCTCAGATTCACAAGTATCTTGTATGC
CAGATGAAAAAGTTTACACATCACAACAAATCACCGTCAATAGCTCAACT
CCGAATAACGAAGACTGGCGAACGGTAAGACTCGCTTCTCGTTTTTTTCT
CgactatttttttctttctctaattttttcttactttcttaTTTTAGTTA
GTTCCATGTTCCTGTTAGTTCCATCTCAATCTTGAAATGTATCTTAAGTG
ATGGAAATACTTTTCTGTAGAGAAATCATGTCACGGTTAAAGCAACCTTG
AATGTTAgaacttgaatttttttgttttttactttcTCTTTTTGATGTTA
AAGTACCATAACAGCGTGTGCTAGCTAAgtcaaataaataaacaaacatG
AAGCTACCCCTCAGAGatcagatttttttgttttctcttaaCCTTTCAAC
GTTACACTTAATTTCCATAACAACACTACATACAAATTCTTGCTTCAAAA
CACCGTTGAACTTATTATGAAGGCATTCTCATTATAATGACATGACATTt
ctttaattaatttttctccttttgaATTGCTTTCTCCTATTGTCCTAATG
CCGCTTAATGACAGCTTTTTGCAAATTAAATACAATAATGAGGCATCATT
TGTTTTGCTTTTCCTTGCATTAATCACCAGTTTGAAGAGAGGGGCACTTC
GAGCTCAAAATGTTCTTTCTAGCCTCGAGAAAGCCTTCGTTAAGAAAAAG
TAGCTACTATAAATTTTTAATTGATCCTTTAGTTTTAAGTTTAGTAGTAA
GATTAAGAATTCTATTCCATTTGTTTCTGTTGGATAGCTCCCTTCGTGAA
AGGGAGAGTTCCATAACTTTcttctgaattttttgatgtgcagaaaaaga
acaaaacatgaCGAAATTTACTTTTCTCTTCTTTACAGACTTTGAATGAG
ATGGACGTATACCTTGCTGAGGACGAATTCACTCgtcaaaatgttttcaa
caGATCACCAAATAAACCAGTTTGTCTACCTACTTCAACCATTGTTTCAA
CACGCCAGCGACGCCCATCCGTCGGCCGTGTGGAAGAATTTTGCAGTGAA
AGCGAAAGTGATTCTTCTTCTACAACATACGATGAACCAATGCATGAAAG
CAATTCCCTCATAGAACACGAGCAAACACCAATGGGAAGCCCTGTTTTTC
ACTGTGCTTCAAACACCGTCAAAACAGAAGTACCTCCGACTTATTTCGAA
AGTATGAAATGTGAGCCCACCAGCCCTTCAACCATTTTTACCTCCACCAC
GACACTTTTCTCACAAAAACTTAACAATACAACATCTTCTCTACAAAAAT
CATTCATCAATCAACCTCCAATCAACGTTCGTCCGCCACCTTACCTAGAT
GCAGCCACTATGGCTGCTAAACGTCAAACATATCGACAAACAATACCTAC
AACGAGAGCATTTCCCATCAACTTTAGTTGTGCTCCACTTAGAGACACTC
AAAGtgaaatcatcaaaaataagaaaacacaTAGATGCGATTATCCAAAC
TGCAATAAAGTATACACAAAATCGTCGCACTTGAAAGCTCATTTCCGTAC
ACATACCGGTGAAAAACCGTACGAATGTCAATGGGAAGGCTGTGATTGGA
AGTTTGCTCGATCTGACGAGCTGACGAGGCATTANAAAAGCCTTCGTTAA
GAAAAAGTAGCTACTATAAATTTTTAATTGATCCTTTAGTTTTAAGTTTA
GTAGTAAGATTAAAAATTCTATTCCATTTGTTTCTGTTGGATAGCTCCCT
TCGTGAAAGGGAGAGTTCCATAACTTTCTTCTGAATTTTGTGATGTGcag
aaaaagaacaaaacatgaCGAAATTTACTTTTCTCTTCTTTACAGACTTT
GAATGAGATGGACGTATACCTTGCTGAGGACGAATTCACTCgtcaaaatg
ttttcaacaGATCACCAAATAAACCAGTTTGTCTACCTACTTCAACCATT
GTTTCAACACGCCAGCGACGCCCATCCGTCGGCCGTGTGGAAGAATTTTG
CAGTGAAAGCGAAAGTGATTCTTCTTCTACAACATACGATGAACCAATGC
ATGAAAGCAATTCCCTCATAGAACACGAGCAAACACCAATGGGAAGCCCT
GTTTTTCACTGTGCTTCAAACACCGTCAAAACAGAAGTACCTCCGACTTA
TTTCGAAAGTATGAAATGTGAGCCCACCAGCCCTTCAACCATTTTTACCT
CCACCACGACACTTTTCTCACAAAAACTTAACAATACAACATCTTCTCTA
CAAAAATCATTCATCAATCAACCTCCAATCAACGTTCGTCCGCCACCTTA
CCTAGATGCAGCCACTATGGCTGCTAAACGTCAAACATATCGACAAACAA
TACCTACAACGAGAGCATTTCCCATCAACTTTAGTTGTGCTCCACTTAGA
GACACTCAAAGtgaaatcatcaaaaataagaaaacacaTAGATGCGATTA
TCCAAACTGCAATAAAGTATACACAAAATCGTCGCACTTGAAAGCTCATT
TCCGTACACATACCGGTGAAAAACCGTACGAATGTCAATGGGAAGGCTGT
GATTGGAAGTTTGCTCGATCTGACGAGCTGACGAGGCATTATCGTAAACA
TACTGGCGACAAACCATTCAAATGTGCACATTGCGATAAAGCTTTTTCAC
GATCAGATCACTTAGCTCTTCACAATAGAAAGCATACCAACCAAAACCAT
TAAAATGAAAACGATGAATGatgaaaaaacaataaaacgaAAAATTAAGC
TGGATTTGATTTTAGTTTCTTAGAAGTTTGACAAAATGTACTTTGTTGCT
TTATGCAACTCTCCTTATTTTCGAGGTTGGGCGGAGAGCCCGCGATGCCT
TCTTTGTGTTCTGGTTTCTCCGCCCTCCCGCCATAGTTAGTATTTTTCTG
TTTAAAAGTTTATATTGTATATAGTATAGAGTATGAAAAAGCAAACCTTA
ATGAACATTTTTGTAAGTATTTGTACATAACAACAAAATCgagaattttt
tcttataacaaaacttTAACGCAGATATTATAAATAGATTTTATGAGCCA
CTACACTGCTACCACAGCAGTTAGTCAAAATAACTTACTTTGtttcaaaa
tagaaatagaaaattgaagaaatgaaaaataagtttgttatTTACATCCT
TAACTCTGGTCATTCCCGCCCCAGCGaaacaatttatttttgtcCCTC Coding sequence (CDS) from alignment at scaffold_245:472582..476329+ >TCONS_00054782 ID=TCONS_00054782|Name=TCONS_00054782|organism=Clytia hemisphaerica|type=CDS|length=3141bp|location=Sequence derived from alignment at scaffold_245:472582..476329+ (Clytia hemisphaerica)
ATGACCTGGAGCGCGAATATGATTCCACTAAATGATGGAACAGATTTGAG
GGTTTCTTCTATGATCGATCGCATACCTAATCTACCATGCTCAGATTCAC
AAGTATCTTGTATGCCAGATGAAAAAGTTTACACATCACAACAAATCACC
GTCAATAGCTCAACTCCGAATAACGAAGACTGGCGAACGACTTTGAATGA
GATGGACGTATACCTTGCTGAGGACGAATTCACTCgtcaaaatgttttca
acaGATCACCAAATAAACCAGTTTGTCTACCTACTTCAACCATTGTTTCA
ACACGCCAGCGACGCCCATCCGTCGGCCGTGTGGAAGAATTTTGCAGTGA
AAGCGAAAGTGATTCTTCTTCTACAACATACGATGAACCAATGCATGAAA
GCAATTCCCTCATAGAACACGAGCAAACACCAATGGGAAGCCCTGTTTTT
CACTGTGCTTCAAACACCGTCAAAACAGAAGTACCTCCGACTTATTTCGA
AAGTATGAAATGTGAGCCCACCAGCCCTTCAACCATTTTTACCTCCACCA
CGACACTTTTCTCACAAAAACTTAACAATACAACATCTTCTCTACAAAAA
TCATTCATCAATCAACCTCCAATCAACGTTCGTCCGCCACCTTACCTAGA
TGCAGCCACTATGGCTGCTAAACGTCAAACATATCGACAAACAATACCTA
CAACGAGAGCATTTCCCATCAACTTTAGTTGTGCTCCACTTAGAGACACT
CAAAGtgaaatcatcaaaaataagaaaacacaTAGATGCGATTATCCAAA
CTGCAATAAAGTATACACAAAATCGTCGCACTTGAAAGCTCATTTCCGTA
CACATACCGGTGAAAAACCGTACGAATGTCAATGGGAAGGCTGTGATTGG
AAGTTTGCTCGATCTGACGAGCTGACGAGGCATTATCGTAAACATACTGG
CGACAAACCATTCAAATGTGCACATTGCGATAAAGCTTTTTCACGATCAG
ATCACTTAGCTCTTCACAATAGAAAGCATACCAACCAAAACCATTAAATG
ACCTGGAGCGCGAATATGATTCCACTAAATGATGGAACAGATTTGAGGGT
TTCTTCTATGATCGATCGCATACCTAATCTACCATGCTCAGATTCACAAG
TATCTTGTATGCCAGATGAAAAAGTTTACACATCACAACAAATCACCGTC
AATAGCTCAACTCCGAATAACGAAGACTGGCGAACGACTTTGAATGAGAT
GGACGTATACCTTGCTGAGGACGAATTCACTCgtcaaaatgttttcaaca
GATCACCAAATAAACCAGTTTGTCTACCTACTTCAACCATTGTTTCAACA
CGCCAGCGACGCCCATCCGTCGGCCGTGTGGAAGAATTTTGCAGTGAAAG
CGAAAGTGATTCTTCTTCTACAACATACGATGAACCAATGCATGAAAGCA
ATTCCCTCATAGAACACGAGCAAACACCAATGGGAAGCCCTGTTTTTCAC
TGTGCTTCAAACACCGTCAAAACAGAAGTACCTCCGACTTATTTCGAAAG
TATGAAATGTGAGCCCACCAGCCCTTCAACCATTTTTACCTCCACCACGA
CACTTTTCTCACAAAAACTTAACAATACAACATCTTCTCTACAAAAATCA
TTCATCAATCAACCTCCAATCAACGTTCGTCCGCCACCTTACCTAGATGC
AGCCACTATGGCTGCTAAACGTCAAACATATCGACAAACAATACCTACAA
CGAGAGCATTTCCCATCAACTTTAGTTGTGCTCCACTTAGAGACACTCAA
AGtgaaatcatcaaaaataagaaaacacaTAGATGCGATTATCCAAACTG
CAATAAAGTATACACAAAATCGTCGCACTTGAAAGCTCATTTCCGTACAC
ATACCGGTGAAAAACCGTACGAATGTCAATGGGAAGGCTGTGATTGGAAG
TTTGCTCGATCTGACGAGCTGACGAGGCATTATCGTAAACATACTGGCGA
CAAACCATTCAAATGTGCACATTGCGATAAAGCTTTTTCACGATCAGATC
ACTTAGCTCTTCACAATAGAAAGCATACCAACCAAAACCATTAAATGACC
TGGAGCGCGAATATGATTCCACTAAATGATGGAACAGATTTGAGGGTTTC
TTCTATGATCGATCGCATACCTAATCTACCATGCTCAGATTCACAAGTAT
CTTGTATGCCAGATGAAAAAGTTTACACATCACAACAAATCACCGTCAAT
AGCTCAACTCCGAATAACGAAGACTGGCGAACGACTTTGAATGAGATGGA
CGTATACCTTGCTGAGGACGAATTCACTCgtcaaaatgttttcaacaGAT
CACCAAATAAACCAGTTTGTCTACCTACTTCAACCATTGTTTCAACACGC
CAGCGACGCCCATCCGTCGGCCGTGTGGAAGAATTTTGCAGTGAAAGCGA
AAGTGATTCTTCTTCTACAACATACGATGAACCAATGCATGAAAGCAATT
CCCTCATAGAACACGAGCAAACACCAATGGGAAGCCCTGTTTTTCACTGT
GCTTCAAACACCGTCAAAACAGAAGTACCTCCGACTTATTTCGAAAGTAT
GAAATGTGAGCCCACCAGCCCTTCAACCATTTTTACCTCCACCACGACAC
TTTTCTCACAAAAACTTAACAATACAACATCTTCTCTACAAAAATCATTC
ATCAATCAACCTCCAATCAACGTTCGTCCGCCACCTTACCTAGATGCAGC
CACTATGGCTGCTAAACGTCAAACATATCGACAAACAATACCTACAACGA
GAGCATTTCCCATCAACTTTAGTTGTGCTCCACTTAGAGACACTCAAAGt
gaaatcatcaaaaataagaaaacacaTAGATGCGATTATCCAAACTGCAA
TAAAGTATACACAAAATCGTCGCACTTGAAAGCTCATTTCCGTACACATA
CCGGTGAAAAACCGTACGAATGTCAATGGGAAGGCTGTGATTGGAAGTTT
GCTCGATCTGACGAGCTGACGAGGCATTATCGTAAACATACTGGCGACAA
ACCATTCAAATGTGCACATTGCGATAAAGCTTTTTCACGATCAGATCACT
TAGCTCTTCACAATAGAAAGCATACCAACCAAAACCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054782-exon-scaffold_245-1491911889:472582..473205 | TCONS_00054782-exon-scaffold_245-1491911889:472582..473205 | Clytia hemisphaerica | exon |
| TCONS_00054782-exon-scaffold_245-1510915933:472582..473205 | TCONS_00054782-exon-scaffold_245-1510915933:472582..473205 | Clytia hemisphaerica | exon |
| TCONS_00054782-exon-scaffold_245-1575043694:472582..473205 | TCONS_00054782-exon-scaffold_245-1575043694:472582..473205 | Clytia hemisphaerica | exon |
| TCONS_00054782-exon-scaffold_245-1491911889:474020..474043 | TCONS_00054782-exon-scaffold_245-1491911889:474020..474043 | Clytia hemisphaerica | exon |
| TCONS_00054782-exon-scaffold_245-1510915933:474020..474043 | TCONS_00054782-exon-scaffold_245-1510915933:474020..474043 | Clytia hemisphaerica | exon |
| TCONS_00054782-exon-scaffold_245-1575043694:474020..474043 | TCONS_00054782-exon-scaffold_245-1575043694:474020..474043 | Clytia hemisphaerica | exon |
| TCONS_00054782-exon-scaffold_245-1491911889:475001..476329 | TCONS_00054782-exon-scaffold_245-1491911889:475001..476329 | Clytia hemisphaerica | exon |
| TCONS_00054782-exon-scaffold_245-1510915933:475001..476329 | TCONS_00054782-exon-scaffold_245-1510915933:475001..476329 | Clytia hemisphaerica | exon |
| TCONS_00054782-exon-scaffold_245-1575043694:475001..476329 | TCONS_00054782-exon-scaffold_245-1575043694:475001..476329 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:472582..476329 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00054782 vs. Swiss-Prot (Human)
Match: KLF5 (Krueppel-like factor 5 OS=Homo sapiens GN=KLF5 PE=1 SV=2) HSP 1 Score: 175.252 bits (443), Expect = 1.558e-47 Identity = 83/140 (59.29%), Postives = 105/140 (75.00%), Query Frame = 1
Query: 1060 NVRPPPYLDAATMAAKRQTYRQTIPTTRAFPINF-SCAPLRDTQ--SEIIKNKKTHRCDYPNCNKVYTKSSHLKAHFRTHTGEKPYECQWEGCDWKFARSDELTRHYRKHTGDKPFKCAHCDKAFSRSDHLALHNRKHTN 1470
N+ PPP AAT+A+K + +PTT P+N + P+R + + ++ ++ H CDYP C KVYTKSSHLKAH RTHTGEKPY+C WEGCDW+FARSDELTRHYRKHTG KPF+C C+++FSRSDHLALH ++H N
Sbjct: 321 NLTPPPSY-AATIASKLAIHNPNLPTT--LPVNSQNIQPVRYNRRSNPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 457
The following BLAST results are available for this feature:
|
