TCONS_00054685 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054685
Unique NameTCONS_00054685
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054685 ID=TCONS_00054685|Name=TCONS_00054685|organism=Clytia hemisphaerica|type=transcript|length=501bp
CGGTTGAATTGGAGAGTCTCATGTTTAGATCAGCTCACCGCTGAACGTTA
GCATTaggaatttattttattttaggtCATTGTTTAGGTTCAAAGTCCAA
TTCTACTGTAAACACGTCAAGTCCCTTTTCCAAATCATCAGCGTGAAAGG
ACGACACTTGACACTTCATCCACACCTCCCTCTCTCTCTCCAACATAAGA
GATGGCTGCTGCACGAAAGATTTGTGCTTATGTGACTGGTGGAGCTTCAG
GATTAGGAAGAGCTACTGTCGAACGTCTTGCAAAGCGAGGAGCAAATGTT
ATAATTGCTGATCTTCCCCAAAGTAATGGCCAACAAGTAGCCAATGATCT
TGGACCAAATGTTCTATTTCACCCAACaaatgtaagtattttttggaaGA
CTGTTTGATCCTTTATGGCGCGCGGAAGCGCCAATAAATACTACTTTGTT
TAAAACGAAATTATGTCATTTAAACCGATActttctcatttaaaaagaaa
c
Run BLAST on NCBI

transcript from alignment at scaffold_243:369357..369857

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054685 ID=TCONS_00054685|Name=TCONS_00054685|organism=Clytia hemisphaerica|type=transcript|length=501bp|location=Sequence derived from alignment at scaffold_243:369357..369857 (Clytia hemisphaerica)
gtttctttttaaatgagaaagTATCGGTTTAAATGACATAATTTCGTTTT
AAACAAAGTAGTATTTATTGGCGCTTCCGCGCGCCATAAAGGATCAAACA
GTCttccaaaaaatacttacatttGTTGGGTGAAATAGAACATTTGGTCC
AAGATCATTGGCTACTTGTTGGCCATTACTTTGGGGAAGATCAGCAATTA
TAACATTTGCTCCTCGCTTTGCAAGACGTTCGACAGTAGCTCTTCCTAAT
CCTGAAGCTCCACCAGTCACATAAGCACAAATCTTTCGTGCAGCAGCCAT
CTCTTATGTTGGAGAGAGAGAGGGAGGTGTGGATGAAGTGTCAAGTGTCG
TCCTTTCACGCTGATGATTTGGAAAAGGGACTTGACGTGTTTACAGTAGA
ATTGGACTTTGAACCTAAACAATGacctaaaataaaataaattcctAATG
CTAACGTTCAGCGGTGAGCTGATCTAAACATGAGACTCTCCAATTCAACC
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034446XLOC_034446Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054685-exon-scaffold_243-1491911889:369357..369857TCONS_00054685-exon-scaffold_243-1491911889:369357..369857Clytia hemisphaericaexon
TCONS_00054685-exon-scaffold_243-1510915933:369357..369857TCONS_00054685-exon-scaffold_243-1510915933:369357..369857Clytia hemisphaericaexon
TCONS_00054685-exon-scaffold_243-1575043694:369357..369857TCONS_00054685-exon-scaffold_243-1575043694:369357..369857Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:369357..369857 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
211.894	214.45	147.335	171.735	149.921	119.247	136.212	188.355	209.275	256.684	344.912	235.066	255.991	281.038	354.408	450.374	203.122	169.023	183.531	187.592	131.569	140.268	155.886	154.515	166.321	145.527	229.241	194.335	243.008	186.72
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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