TCONS_00054198 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054198
Unique NameTCONS_00054198
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2037

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054198 ID=TCONS_00054198|Name=TCONS_00054198|organism=Clytia hemisphaerica|type=transcript|length=2037bp
CAGAGATATAAAACAAACATTAGATTAATGCATTGATATTCATACATGTA
TACCATCCATAATTCATTGCGGTAGTCATCAAACTGTCACAGAATAACAA
TCAGGAAATGAGAGGACAGAATTTTCCATTTGGAATGAGTTAAATCGATT
AAGTATACATTATCTATCGTGACTGTCTGTCAGTTGTTGTCTGGTGTAAG
GGACTTCTCACTTCTCGAGAGAGGACATTTTCCTTCAAGAGAGGTTTTTT
GAAACTTGCTTGCTTTACAACATTTCCGAAGGACCTTGTTACCATCTTGA
ATTCGCTCAATAATATATTCTTTACGGAGACTGATAACCGCTCATTAAGT
TACAAACAAGCTGGAATTGGTACCACAATTGACTGGAATTATCATACAAA
GGCTTCAATTTAAATTAGTCCTGCTACCATTCTCGACTTACTTCGTTGGG
CTGAAGCTCTCATTATTTGTGTCACCAAAGCATTCTCAAGATGAGTACCA
GCGCACGGAATATCGTGACCACGGACATGAAAACTATTCGCGATTACCGT
GAAGTACATGACACAGAAGAATTTAATGCATTTATTGAAATGAACGAAAA
GAAAATGGCGGAACGAGAAGCGAATAATCGACGCGGTGATGCTGGATTTG
AAAATGAACGTTCTACTAATAAAAAGATTGAGACCAAAAAAGAACAGAGA
ATCACAGAAGCTAAAGAGAAAGCTAAAGAACATAAAAAGAAACAGGAGAA
AATTTTGGCACCGCCAACGCCCCCGCCCCAAGAGGAGGAAGAAGTAATTG
AGGAAGTGAAACCAATGATTGATGAAGAAGAATGGAAAAGGAGGGTGATG
GAAGATATTGTGGAGAGTTTCCATGCGATCGATTTGAACGGAGATGGCAA
GATTTCAGTGCACGAATTAATGTCTGCAATGAATGCTGCTGGTGAAGATG
TTTCGGCTGAAGATattgaagatatttttgacGTCATCGACCTCGATGGC
GACGGTGAGATCAGTTTTGAGGAATTCAAGGATGCGATGTACGAAAAGAT
GTCACAACAAACAGTGGACGAAGACCTTATTGGTGCGTTCGAAATCTTCG
ATGACGATGGAGATGGCTATATCTCACCAACAGAAATCCAATTGATGTTC
AAGAAACTTGGTGAATTAATCTCCACTGACGAAGCTGTGGAAATGATGAA
AGACTGTGATATCAATAAAGATGGACTTATCGATTTTGAAGAATTCAAAG
CTTTCTATCTGAAGATTTTTGAGAACCAACCAACACTGGCTGAAATGATG
ATGCAAGAGCaagaaagaattgaaaaagaagaaatcgaTAAAGCTGAATG
GGATAAATTGAACGCACAATTCCCTGCTTCAGGACATCCAGAATCTTCCA
TATTTGATTACAAATAATGATGAAAAGGATACGAAAAGGATGTTTTCCCC
CTGGGTATAGAATGTCTACTTCGATAATGATATTCACGTACCATGATTCA
GTACGTGTGAAACAGTTTTGATTGCCGTGAATCTCGCAAGCTGCTTGGAA
GATAGAAAGAAGATAAGAAAAGatgaattacaaacaaaatggacaaaatt
caAATGACAAGATAAGCTTAATTTTAAATTGAAACATGTTTTACCAGTCA
TTAAAACATTTATCAATACTGGTAGCAACTTTTTGAATGAAACAACGAAG
GACTGATCAACTCTTGTGTCATCAGCATTCAACGAACTGAAAAATTGACA
AACCAGATGcaccaaaaaacaaaatatatatttttacaaaGATATTGTGA
GCCTACGACAAAAGATTTTTcgtttattctttttttattctacAGAGGAA
AGTtttacttaaattttggtatatatAACTTTAAAATCGGTTCACTCAAG
GTTatgttaaaaaaactgaaattttgaccaaccaaaaatgaaaaaaaaaa
taaaaacagtaaTTTTAATGAAGAATCAACGAGAAATCTTTAACCGTAAG
CTCACGATATcttgacaaacctgtatactttttttgg
Run BLAST on NCBI

transcript from alignment at scaffold_242:269782..274972+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054198 ID=TCONS_00054198|Name=TCONS_00054198|organism=Clytia hemisphaerica|type=transcript|length=5191bp|location=Sequence derived from alignment at scaffold_242:269782..274972+ (Clytia hemisphaerica)
CAGAGATATAAAACAAACATTAGATTAATGCATTGATATTCATACATGTA
TACCATCCATAATTCATTGCGGTAGTCATCAAACTGTCACAGTATGTATT
CACGTGTCAATATACTGTAACCTAGTTACAAtccttttttatcaaatttt
tagaTGAATTGAAGGAATATATATTTTGGAAAGTGAaagaataataaaaa
gaaaaaaactattttatttcaagtttttattcGAACTGGTTTTTGTTTTT
CCGACGGAAGAAACAATAATTTAATTGCGCTTGAATTAAGGCGAATTAAG
GCAACCCAGAACTTCCTCACGCAGTTAGTTTGAATCAAATTTTCTCAAtg
gcaattttttattttattgcttTTAGTTATcaatcattatttgtgtttta
GGAATAACAATCAGGAAATGAGAGGACAGAATTTTCCATTTGGAATGAGT
TAAATCGATTAAGTATACATTATCTATCGTGACTGTCTGTCAGTTGTTGT
CTGGTGTAAGGGACTTCTCACTTCTCGAGAGAGGACATTTTCCTTCAAGA
GAGGTTTTTTGAAACTTGCTTGCTTTACAACATTTCCGAAGGACCTTGTT
ACCATCTTGAATTCGCTCAATAATATATTCTTTACGGAGACTGATAACCG
CTCATTAAGTTACAAACAAGCTGGAATTGGTACCACAATTGACTGGAATT
ATCATACAAAGGCTTCAATTTAAATTAGTCCTGCTACCATTCTCGACTTA
CTTCGTTGGGCTGAAGCTCTCATTATTTGTGTCACCAAAGCATTCTCAAG
ATGAGTACCAGCGCACGGAATATCGTGACCACGGACATGAAAACTATTCG
CGATTACCGTGAAGTACATGACACAGAAGAATTTAATGCATTTATTGAAA
TGAACGAAAAGAAAATGGCGGAACGAGAAGCGAATAATCGACGCGGTGAT
GCTGGATTTGAAAATGAACGTTCTACTAATAAAAAGATTGAGACCAAAAA
AGAACAGAGAATCACAGAAGCTAAAGAGAAAGCTAAAGAACATAAAAAGA
AACAGGAGAAAATTTTGGCACCGCCAACGCCCCCGCCCCAAGAGGAGGAA
GAAGTAATTGAGGTATTGAATGGGTTttgtttctcaatttctttttttca
tacCTGTAAAATTGTTGGGCttttctgattttcttgaatgttactttaaa
ctttaaatttggTAAGCTCAAATCAGAGGTATAGCTTGTTACACTTGATT
TTGAGTATGTAGGTAAGATTGTTGATTTGAATATGGATTGAACTCTTTTC
TTTTAGGAAGTGAAACCAATGATTGATGAAGAAGAATGGAAAAGGAGGGT
GATGGAAGGTAAGGAGGGAGGTTTTTCTAAGTCTAAAtttaggatgaata
ttaaaAGGAGCGGTGATTGGCTAATGCAAAAGAATCGGGCTCTTCCAGAA
GATTTTTGTACATTGGCGTGGAGGATAAATTGGGTATTTTGTCcaggggg
gtagtgaaaaatctgcaaaatttgtttgttttaggggcaaacttgctctg
attaagggtgattttgaatgtccggaGGGTCAAATAATGCTTTTCCGGGG
GGGGTGAGATccgttgtccgggggtcaaaattcacaatgtccgggtgtaa
atttccaaaaaaaaattatatcctccacccccccccaccatattcaattt
tttttctggaagagcccattcatACACATAAAAATTAGAACCTGATTATT
TTTAAGCAAAAGGGAGCACAGTTTTAAATGTTCAGGTTGAACAATCAGGT
CGGTCCATCATATTCGCCGAATCCTTTAAGAAAAAGAATGTGGTGTGTGG
TAGAATGGATGATATGTTATGAGATTAGAATTGTTTCCTTTTGGGTGTCC
TGGTGTCCTACTGGGAAAGGGAAATTCCGTATTGCTGGATGCTCTGTGAG
ATAAAGATGGTgtaaccaatgaagtataagcccgaagggctagaattgaa
tctccttggtaggatttgaagccaacaaaatcctaccaaagttgcacgGT
CTGACATATTGAAATTATAATTTATtacttaatttaaaaaaaatatcata
taCTCGAAAACAAAGGTATTGCttgattcaatccgtcgtcaagaATACGg
tgcatattttaaggcttcactttttcttgcttctagcccttcgggcttat
actccATTGGGTGTAACCTTGACACTGACAAATATCAAGGATAGTAActa
cataaacttttttttctgaccatttgctttgatttttttccatcGACAGA
TATTGTGGAGAGTTTCCATGCGATCGATTTGAACGGAGATGGCAAGATTT
CAGTGCACGAATTAATGTCTGCAATGAATGCTGCTGGTGAAGATGTTTCG
GCTGAAGATattgaagatatttttgacGTCATCGACCTCGATGGTAAGGC
TCCTTACTGTAGACTGTCTTACTGTACTCCTTATACTGTATTATCGATTC
TTTGACagataataccgagtttatgtatgtgtgtttttcaacgacggaga
cggtaaggttctaatttgattagatcctgaccaactgaggacgacggtaa
atcagcacttctaccgtcctcgatttagcgggtcagaactgcgggttatt
tattccaaatcgcttcagtcactctacagtcctcaaaagtgcaaatacat
aaactcgctaatttGATGAAGGTAGCGGGGAAAGGATGTGCTCTAAATCT
CATCAAAGTAAGGGTCTTTTTGGCCAAGATGTTTTAAACTATTTCTTCAA
GAATTACCAGAGTCAATTTGGCTTTCGCACCAAACACgccttttcataaa
tcatttagagtgcaacgactgcctcgttttgaaactattatcaaggtgat
taaatcccaataacgtttcttttataaatagagtaccttaaaggaagaaa
ttttggcggaaagaaaatttggcggatttggcggatttgactgaaatccg
ccaaattaagttcccgccaaaatttctttttcccgccatccgccaaatta
atttcccgccaaaatttctttttcccgccatccgccaaattaatttcccg
ccaaaatttctttttcccgccatccgccaaattaatttcccgccaaaatt
tctttttcccgccatccgccaaattaatttcccgccaaaatttctttttc
ccgccatccgccaaattaatttcccgccaaaatttcttttttcctccatc
cgccaaattaaattccctctgaaaaaacttttttggccatccgccaaatt
aaattcccgccaaaatttcttcctttaaggtatactAACTCTTCTGGAAA
TCGAAAAACAAGATAAGCGTTGCTTATGGCGTAATTATGAGAGATCTGTC
ATATgaaccaaataaaaataatgttAGACTTCAATTACATTTCACACTTA
TATTCACACGTATTTCAGGCGACGGTGAGATCAGTTTTGAGGAATTCAAG
GATGCGATGTACGAAAAGATGTCACAACAAACAGTGGACGAAGACCTTAT
TGGTGCGTTCGAAATCTTCGATGACGATGGAGATGGCTATATCTCACCAA
CAGAAATCCAATTGATGTTCAAGAAACTTGGTGAATTAATCTCCACTGAC
GAAGCTGTGGAAATGATGAAAGACTGTGATATCAATAAAGATGGACTTAT
CGATTTTGAAGgtacaaaagaatatttttgatttgttaTGATTGGTCGAT
GCAAATGAtgaatgacttttttgaaaataaaacacccctgtctcacagcc
ccggtggattTTTTTGCCACCACAGTGAATCtcaatgggaatagaaatta
tattATTCCCAAGCTTAAGATATCCAGTGGGTATGGTTTTGGATAGCTTG
GATAGATTTTTTAACATtggatttcgaatggggatgaaatcaaaatcaga
tttaaagtggggctgaaattgcagggtattttgtccaccggggacgaaag
aAATCAAATCCCTGGTTTGACTACCTtaagtttttagaatttattcGAGA
TATGGAGttaggtttataaggcattgttaactatatggagaaggagacat
tcgagttatagaggctcGAGTTAAGCATTGGAGTAGtaaattgaaatcaa
aaataatagCGCTCAGCaatgcatacgtcataattattacttttattttt
tttgacatttgtacgagttgcaatcccacaattcaatgcggctcaattaa
agatacgtgcaagttgttatatatctttaGTCAAATGATTTAATTAACTT
GCAAAAGAGATTTTaaaacgcaaaggttgatgggattgtaactcgtacaa
acacattgAGAGTAATGATTGTGTCAAAAGTCTATTTTCGTTTAGAATTC
AAAGCTTTCTATCTGAAGATTTTTGAGAACCAACCAACACTGGCTGAAAT
GATGATGCAAGAGCaagaaagaattgaaaaagaagaaatcgaTAAAGCTG
AATGGGATAAATTGAACGCACAATTCCCTGCTTCAGGACATCCAGAATCT
TCCATATTTGATTACAAATAATGATGAAAAGGATACGAAAAGGATGTTTT
CCCCCTGGGTATAGAATGTCTACTTCGATAATGATATTCACGTACCATGA
TTCAGTACGTGTGAAACAGTTTTGATTGCCGTGAATCTCGCAAGCTGCTT
GGAAGATAGAAAGAAGATAAGAAAAGatgaattacaaacaaaatggacaa
aattcaAATGACAAGATAAGCTTAATTTTAAATTGAAACATGTTTTACCA
GTCATTAAAACATTTATCAATACTGGTAGCAACTTTTTGAATGAAACAAC
GAAGGACTGATCAACTCTTGTGTCATCAGCATTCAACGAACTGAAAAATT
GACAAACCAGATGcaccaaaaaacaaaatatatatttttacaaaGATATT
GTGAGCCTACGACAAAAGATTTTTcgtttattctttttttattctacAGA
GGAAAGTtttacttaaattttggtatatatAACTTTAAAATCGGTTCACT
CAAGGTTatgttaaaaaaactgaaattttgaccaaccaaaaatgaaaaaa
aaaataaaaacagtaaTTTTAATGAAGAATCAACGAGAAATCTTTAACCG
TAAGCTCACGATATcttgacaaacctgtatactttttttgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034186XLOC_034186Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054198-exon-scaffold_242-1491911889:269782..269872TCONS_00054198-exon-scaffold_242-1491911889:269782..269872Clytia hemisphaericaexon
TCONS_00054198-exon-scaffold_242-1510915933:269782..269872TCONS_00054198-exon-scaffold_242-1510915933:269782..269872Clytia hemisphaericaexon
TCONS_00054198-exon-scaffold_242-1575043694:269782..269872TCONS_00054198-exon-scaffold_242-1575043694:269782..269872Clytia hemisphaericaexon
TCONS_00054198-exon-scaffold_242-1491911889:270183..270893TCONS_00054198-exon-scaffold_242-1491911889:270183..270893Clytia hemisphaericaexon
TCONS_00054198-exon-scaffold_242-1510915933:270183..270893TCONS_00054198-exon-scaffold_242-1510915933:270183..270893Clytia hemisphaericaexon
TCONS_00054198-exon-scaffold_242-1575043694:270183..270893TCONS_00054198-exon-scaffold_242-1575043694:270183..270893Clytia hemisphaericaexon
TCONS_00054198-exon-scaffold_242-1491911889:271088..271139TCONS_00054198-exon-scaffold_242-1491911889:271088..271139Clytia hemisphaericaexon
TCONS_00054198-exon-scaffold_242-1510915933:271088..271139TCONS_00054198-exon-scaffold_242-1510915933:271088..271139Clytia hemisphaericaexon
TCONS_00054198-exon-scaffold_242-1575043694:271088..271139TCONS_00054198-exon-scaffold_242-1575043694:271088..271139Clytia hemisphaericaexon
TCONS_00054198-exon-scaffold_242-1491911889:272081..272224TCONS_00054198-exon-scaffold_242-1491911889:272081..272224Clytia hemisphaericaexon
TCONS_00054198-exon-scaffold_242-1510915933:272081..272224TCONS_00054198-exon-scaffold_242-1510915933:272081..272224Clytia hemisphaericaexon
TCONS_00054198-exon-scaffold_242-1575043694:272081..272224TCONS_00054198-exon-scaffold_242-1575043694:272081..272224Clytia hemisphaericaexon
TCONS_00054198-exon-scaffold_242-1491911889:273250..273492TCONS_00054198-exon-scaffold_242-1491911889:273250..273492Clytia hemisphaericaexon
TCONS_00054198-exon-scaffold_242-1510915933:273250..273492TCONS_00054198-exon-scaffold_242-1510915933:273250..273492Clytia hemisphaericaexon
TCONS_00054198-exon-scaffold_242-1575043694:273250..273492TCONS_00054198-exon-scaffold_242-1575043694:273250..273492Clytia hemisphaericaexon
TCONS_00054198-exon-scaffold_242-1491911889:274177..274972TCONS_00054198-exon-scaffold_242-1491911889:274177..274972Clytia hemisphaericaexon
TCONS_00054198-exon-scaffold_242-1510915933:274177..274972TCONS_00054198-exon-scaffold_242-1510915933:274177..274972Clytia hemisphaericaexon
TCONS_00054198-exon-scaffold_242-1575043694:274177..274972TCONS_00054198-exon-scaffold_242-1575043694:274177..274972Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:269782..274972 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.07125e-08	0	0	0.36548	1.36068	2.35775	1.39702	1.35433	2.01163	1.38423	9.77583e-05	0.985362	2.74118	3.1856	1.47649	0.636719	0.475157	0.955384	9.84808	9.04431	1.90103	0.685826	0.0288403	0.40369	2.20733	3.42077	0.585467	0	0.129	0.833741
Blast
[Close]
BLAST of TCONS_00054198 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.022e-22
Identity = 48/128 (37.50%), Postives = 81/128 (63.28%), Query Frame = 2 
Query:  863 ESFHAIDLNGDGKISVHELMSAMNAAGEDVSAEDIEDIFDVIDLDGDGEISFEEFKDAMYEKMSQQTVDEDLIGAFEIFDDDGDGYISPTEIQLMFKKLGELISTDEAVEMMKDCDINKDGLIDFEEF 1246
            E+F   D +GDG I+  EL + M + G++ +  +++D+ + +D DG+G I F EF   M  KM     +E++  AF +FD DG+GYIS  E++ +   LGE ++ +E  EM+++ DI+ DG +++EEF
Sbjct:   15 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142
The following BLAST results are available for this feature:
BLAST of TCONS_00054198 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM31.022e-2237.50Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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