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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053748 ID=TCONS_00053748|Name=TCONS_00053748|organism=Clytia hemisphaerica|type=transcript|length=1196bp
TGCGTTACAATCTGCGTTACACCGATACCCAGACTTCTCCTTGTGCGTGT
GTGGTCCTCTGAGTATCACTTGAAAGCAATAGCGTTTGAGATTTTACGTT
TGAGAAAGGTAATTACTTCTTTCTGAAGGAAAATGTAAATAATCGCGTCG
GAGATGAAACCCAGTGGATATAAATTCTTTAAGATGTCTTGCAGCATGCG
ACTGACCACTTCTCTGTCATAAAAATGCGCCATGAGGCTGTcccaaaaat
tgatttgatcAGGAATGAGCCAAAAGATAACAAAAGTGATAATGAGAAGG
GTTGGTGTGAAAAATCCACGACGAATCTTTTTTGTGATGTTACTCGATGT
CTGCCGCTTAACTGGTACCTTCACCACCTCACTACCTTGAGGTGTCAACT
CGATGGAGGAGGGACCTTTGGTGGATGCAGTGTTGTTGGTTGAGTTTTCG
GTGTTTGTTCGCCTTATGGAGATGTCTGTGGTAGCAGTGCGGGAGGATGA
AGCGTATTGTGTTTGCGTACTTCGAAGACGACGAATCTTGGCGAAGAAAT
AGGTGTAAGTGACAACAGCTGTTAACAGAAAAGTGAAATCCAGAACAGGC
CACAGGTAGAGCTGAATAATATCATTGATAACGAACATCTCCGTCAAAAC
AACGGGCACAGACAATAATACAGAGACAATGAATAGTACAGCTAACAAGA
TATTAGTTTTGGTATTTGACCAGACCAAAGGGTAGCGGATGTTCAGGTAA
ACCATCAAAAACCGATCGAATgtcatcagaatcatcaaacCAATGTACca
gaagtataagcccgaaatCGCGATTTTATAGAGATGAACAGCTGCCTCAA
AGAGTTCGTTGTCCAGAAAAAAACGAATTGCCACAAAGATGATTGAAGAA
ACCAGCTCACAACAACTGATGTTCAACAGATAGATACGCTGCGTCGAGGA
GAGGTTTGGCCCCACTGGTACTTTCCACAAAACTATAAATCCGAAGCTGT
GCAGGATTACCGAAATGAGATAAAGCGTAACATTGATGATGTCTTTTACC
TCCATTTGTATGAGAGAAAATAAAGTTTAATGGCCTTCTTTCTATAGTCT
CCTTCAAAATCACgagtttttaatttcaaaagaacTTCACATTTGTTTTA
CGCTCGCACACCTCTTCTCAGAATCGTTCTCCTTTCTTCGTCGTCG Run BLAST on NCBI protein sequence of TCONS_00053748-protein >TCONS_00053748-protein ID=TCONS_00053748-protein|Name=TCONS_00053748-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
MEVKDIINVTLYLISVILHSFGFIVLWKVPVGPNLSSTQRIYLLNISCCE
LVSSIIFVAIRFFLDNELFEAAVHLYKIAISGLYFWYIGLMILMTFDRFL
MVYLNIRYPLVWSNTKTNILLAVLFIVSVLLSVPVVLTEMFVINDIIQLY
LWPVLDFTFLLTAVVTYTYFFAKIRRLRSTQTQYASSSRTATTDISIRRT
NTENSTNNTASTKGPSSIELTPQGSEVVKVPVKRQTSSNITKKIRRGFFT
PTLLIITFVIFWLIPDQINFWDSLMAHFYDREVVSRMLQDILKNLYPLGF
ISDAIIYIFLQKEVITFLKRKISNAIAFK Run BLAST on NCBI transcript from alignment at scaffold_233:854155..855350 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053748 ID=TCONS_00053748|Name=TCONS_00053748|organism=Clytia hemisphaerica|type=transcript|length=1196bp|location=Sequence derived from alignment at scaffold_233:854155..855350 (Clytia hemisphaerica)
CGACGACGAAGAAAGGAGAACGATTCTGAGAAGAGGTGTGCGAGCGTAAA
ACAAATGTGAAgttcttttgaaattaaaaactcGTGATTTTGAAGGAGAC
TATAGAAAGAAGGCCATTAAACTTTATTTTCTCTCATACAAATGGAGGTA
AAAGACATCATCAATGTTACGCTTTATCTCATTTCGGTAATCCTGCACAG
CTTCGGATTTATAGTTTTGTGGAAAGTACCAGTGGGGCCAAACCTCTCCT
CGACGCAGCGTATCTATCTGTTGAACATCAGTTGTTGTGAGCTGGTTTCT
TCAATCATCTTTGTGGCAATTCGTTTTTTTCTGGACAACGAACTCTTTGA
GGCAGCTGTTCATCTCTATAAAATCGCGatttcgggcttatacttctgGT
ACATTGgtttgatgattctgatgacATTCGATCGGTTTTTGATGGTTTAC
CTGAACATCCGCTACCCTTTGGTCTGGTCAAATACCAAAACTAATATCTT
GTTAGCTGTACTATTCATTGTCTCTGTATTATTGTCTGTGCCCGTTGTTT
TGACGGAGATGTTCGTTATCAATGATATTATTCAGCTCTACCTGTGGCCT
GTTCTGGATTTCACTTTTCTGTTAACAGCTGTTGTCACTTACACCTATTT
CTTCGCCAAGATTCGTCGTCTTCGAAGTACGCAAACACAATACGCTTCAT
CCTCCCGCACTGCTACCACAGACATCTCCATAAGGCGAACAAACACCGAA
AACTCAACCAACAACACTGCATCCACCAAAGGTCCCTCCTCCATCGAGTT
GACACCTCAAGGTAGTGAGGTGGTGAAGGTACCAGTTAAGCGGCAGACAT
CGAGTAACATCACAAAAAAGATTCGTCGTGGATTTTTCACACCAACCCTT
CTCATTATCACTTTTGTTATCTTTTGGCTCATTCCTgatcaaatcaattt
ttgggACAGCCTCATGGCGCATTTTTATGACAGAGAAGTGGTCAGTCGCA
TGCTGCAAGACATCTTAAAGAATTTATATCCACTGGGTTTCATCTCCGAC
GCGATTATTTACATTTTCCTTCAGAAAGAAGTAATTACCTTTCTCAAACG
TAAAATCTCAAACGCTATTGCTTTCAAGTGATACTCAGAGGACCACACAC
GCACAAGGAGAAGTCTGGGTATCGGTGTAACGCAGATTGTAACGCA Coding sequence (CDS) from alignment at scaffold_233:854155..855350 >TCONS_00053748 ID=TCONS_00053748|Name=TCONS_00053748|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at scaffold_233:854155..855350 (Clytia hemisphaerica)
ATGGAGGTAAAAGACATCATCAATGTTACGCTTTATCTCATTTCGGTAAT
CCTGCACAGCTTCGGATTTATAGTTTTGTGGAAAGTACCAGTGGGGCCAA
ACCTCTCCTCGACGCAGCGTATCTATCTGTTGAACATCAGTTGTTGTGAG
CTGGTTTCTTCAATCATCTTTGTGGCAATTCGTTTTTTTCTGGACAACGA
ACTCTTTGAGGCAGCTGTTCATCTCTATAAAATCGCGatttcgggcttat
acttctgGTACATTGgtttgatgattctgatgacATTCGATCGGTTTTTG
ATGGTTTACCTGAACATCCGCTACCCTTTGGTCTGGTCAAATACCAAAAC
TAATATCTTGTTAGCTGTACTATTCATTGTCTCTGTATTATTGTCTGTGC
CCGTTGTTTTGACGGAGATGTTCGTTATCAATGATATTATTCAGCTCTAC
CTGTGGCCTGTTCTGGATTTCACTTTTCTGTTAACAGCTGTTGTCACTTA
CACCTATTTCTTCGCCAAGATTCGTCGTCTTCGAAGTACGCAAACACAAT
ACGCTTCATCCTCCCGCACTGCTACCACAGACATCTCCATAAGGCGAACA
AACACCGAAAACTCAACCAACAACACTGCATCCACCAAAGGTCCCTCCTC
CATCGAGTTGACACCTCAAGGTAGTGAGGTGGTGAAGGTACCAGTTAAGC
GGCAGACATCGAGTAACATCACAAAAAAGATTCGTCGTGGATTTTTCACA
CCAACCCTTCTCATTATCACTTTTGTTATCTTTTGGCTCATTCCTgatca
aatcaatttttgggACAGCCTCATGGCGCATTTTTATGACAGAGAAGTGG
TCAGTCGCATGCTGCAAGACATCTTAAAGAATTTATATCCACTGGGTTTC
ATCTCCGACGCGATTATTTACATTTTCCTTCAGAAAGAAGTAATTACCTT
TCTCAAACGTAAAATCTCAAACGCTATTGCTTTCAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053748-exon-scaffold_233-1491911889:854155..855350 | TCONS_00053748-exon-scaffold_233-1491911889:854155..855350 | Clytia hemisphaerica | exon |
| TCONS_00053748-exon-scaffold_233-1510915933:854155..855350 | TCONS_00053748-exon-scaffold_233-1510915933:854155..855350 | Clytia hemisphaerica | exon |
| TCONS_00053748-exon-scaffold_233-1575043694:854155..855350 | TCONS_00053748-exon-scaffold_233-1575043694:854155..855350 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:854155..855350 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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