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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053740 ID=TCONS_00053740|Name=TCONS_00053740|organism=Clytia hemisphaerica|type=transcript|length=1742bp
CCTGAATCTTGTGttgttcttcttttgtttttagttttttcttacaCCAC
ACTTACCAATTAATAAAATCTTTCTGAAAAAGCGTGATCGATATTCTGAT
AGAGAGAAAGGTGAGATAAATAAACTTGACAAGGACGGATGTTATGAATT
GAAAGGGAAGTTATGagcaaaattttacaacaaaagtttttggcGAATAT
TTCAACTCTCATCAAACCAACGAACATACGACTGTTTTCTTTGCATCTGG
GTGGTAGCGTTAGAAAATTCATGTATAGGTGATAGACAACGCCCTCCTCC
CCCACTGGATGCTATCTTACCGCCCTCCATGCTCCGGTACGGAGAAATCT
TGATGGCTTTTTGTGAAGAGTCTCTTTGGCGTTGAAAATCTGAATGCAAT
GAAGAAAAAGTACTATTAGTGTTTGTGGTGTCCATAGCCGTATTGCTTCT
CTGTTTCGTTCGCTGTTGATGTCTGTTGTTTAAATTGAACTGACGTTTAT
CACCTATTTGTAGATGCGCTACTTTACTTAAACATTCGTTGCTCCTTGAC
GACACAGTAggtggaagaaattttcgctgGTTATTTAAATGTCCAGTACT
GTGACTTAGATATCGattctttttcagttcttctaTTCCACTTCTATCCA
AACGTTTCTTTGAGAAAGGTGTCAACATTTTAACGGTGACTGATAGTTTC
TCTGGTATGTGCATGAGgcggatgacgtcatcaacgctcatctttttgac
gtcaacttTATTGACTTGAACTATTTCATCACCCACGCGTAGAAtttcaa
actgatcaaaaataGAACCAAGTGAGATGCGGGAGACGTATATGCCTTCA
CCTTTTTCCCAGCCATCTCCTCTACGCAGACTAATACCTATCTCCTCGTC
TGTATTACGTAATATATCTATTGTTCGATATTTGAATGCTCCTGTTTTTG
AAGAAAGTTCTTTGATAGAAAGCATGTGTTTGAAAGAGCCTTCCACTACT
TTGGCAGATTGCGTACAAAAAGTGATTTTAGCTTTAGGATCAGGGTTGAT
GATATCTCTAGCGTATTGCAAGACATCTTCCAATTCAGTTTCGCGCAATT
TTTCGAGTGTTTCATGAGTAATCGTTGTGCCCTCATCCGCCGATTGGCTG
TTCCTATTTACATTTATATTGTTATTGTTATCATTCTGAAAGGAGCCATT
TTTGGTTTTCAAGATACCTCGACTCTGTTTACGAGGTATTCGTTGAATGA
CATTCAGAGAACCTTTATTCAGGCCCATGGACGACGAATGTAGACTACTA
TCCGGTGTGCTTCTTGACATAGTGGTGATGCTCCCAGCTCGGCTTCCCTC
TGTGGAGGAGAAATCAGTATCTTCGTAAAAACAACGCGAATCTAACGAAA
AGTTATCGAATTCACCGCCATAATATGAGTCATTGGTAGTAACCGTTGAA
TGGTTATCATGGTAAAAATCGTCGGTGTTGACGGACGTTTCGTCGGAGTA
AGTATCCATATTGATAGATGAGTCGTACGTCACCATGTCGTAATAATTCA
TATAACTGTTACTACTGGATAAAGATGATGTATCCATGATGCGAAGCGCA
CAATTACTCTCCCGTCTTCCTTTTACTATTCATCTGActtttttacttta
attttctaaaatcgaaaaaatttatACCAATACAATATACTATTGTCGAA
TGAAGTTAATGAGTTTTATTTCAATACTAATAGTTTCACGCT Run BLAST on NCBI protein sequence of TCONS_00053740-protein >TCONS_00053740-protein ID=TCONS_00053740-protein|Name=TCONS_00053740-protein|organism=Clytia hemisphaerica|type=polypeptide|length=461bp
MDTSSLSSSNSYMNYYDMVTYDSSINMDTYSDETSVNTDDFYHDNHSTVT
TNDSYYGGEFDNFSLDSRCFYEDTDFSSTEGSRAGSITTMSRSTPDSSLH
SSSMGLNKGSLNVIQRIPRKQSRGILKTKNGSFQNDNNNNINVNRNSQSA
DEGTTITHETLEKLRETELEDVLQYARDIINPDPKAKITFCTQSAKVVEG
SFKHMLSIKELSSKTGAFKYRTIDILRNTDEEIGISLRRGDGWEKGEGIY
VSRISLGSIFDQFEILRVGDEIVQVNKVDVKKMSVDDVIRLMHIPEKLSV
TVKMLTPFSKKRLDRSGIEELKKNRYLSHSTGHLNNQRKFLPPTVSSRSN
ECLSKVAHLQIGDKRQFNLNNRHQQRTKQRSNTAMDTTNTNSTFSSLHSD
FQRQRDSSQKAIKISPYRSMEGGKIASSGGGGRCLSPIHEFSNATTQMQR
KQSYVRWFDES Run BLAST on NCBI transcript from alignment at scaffold_233:723022..724763 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053740 ID=TCONS_00053740|Name=TCONS_00053740|organism=Clytia hemisphaerica|type=transcript|length=1742bp|location=Sequence derived from alignment at scaffold_233:723022..724763 (Clytia hemisphaerica)
AGCGTGAAACTATTAGTATTGAAATAAAACTCATTAACTTCATTCGACAA
TAGTATATTGTATTGGTataaattttttcgattttagaaaattaaagtaa
aaaagTCAGATGAATAGTAAAAGGAAGACGGGAGAGTAATTGTGCGCTTC
GCATCATGGATACATCATCTTTATCCAGTAGTAACAGTTATATGAATTAT
TACGACATGGTGACGTACGACTCATCTATCAATATGGATACTTACTCCGA
CGAAACGTCCGTCAACACCGACGATTTTTACCATGATAACCATTCAACGG
TTACTACCAATGACTCATATTATGGCGGTGAATTCGATAACTTTTCGTTA
GATTCGCGTTGTTTTTACGAAGATACTGATTTCTCCTCCACAGAGGGAAG
CCGAGCTGGGAGCATCACCACTATGTCAAGAAGCACACCGGATAGTAGTC
TACATTCGTCGTCCATGGGCCTGAATAAAGGTTCTCTGAATGTCATTCAA
CGAATACCTCGTAAACAGAGTCGAGGTATCTTGAAAACCAAAAATGGCTC
CTTTCAGAATGATAACAATAACAATATAAATGTAAATAGGAACAGCCAAT
CGGCGGATGAGGGCACAACGATTACTCATGAAACACTCGAAAAATTGCGC
GAAACTGAATTGGAAGATGTCTTGCAATACGCTAGAGATATCATCAACCC
TGATCCTAAAGCTAAAATCACTTTTTGTACGCAATCTGCCAAAGTAGTGG
AAGGCTCTTTCAAACACATGCTTTCTATCAAAGAACTTTCTTCAAAAACA
GGAGCATTCAAATATCGAACAATAGATATATTACGTAATACAGACGAGGA
GATAGGTATTAGTCTGCGTAGAGGAGATGGCTGGGAAAAAGGTGAAGGCA
TATACGTCTCCCGCATCTCACTTGGTTCtatttttgatcagtttgaaaTT
CTACGCGTGGGTGATGAAATAGTTCAAGTCAATAaagttgacgtcaaaaa
gatgagcgttgatgacgtcatccgcCTCATGCACATACCAGAGAAACTAT
CAGTCACCGTTAAAATGTTGACACCTTTCTCAAAGAAACGTTTGGATAGA
AGTGGAAtagaagaactgaaaaagaatCGATATCTAAGTCACAGTACTGG
ACATTTAAATAACcagcgaaaatttcttccaccTACTGTGTCGTCAAGGA
GCAACGAATGTTTAAGTAAAGTAGCGCATCTACAAATAGGTGATAAACGT
CAGTTCAATTTAAACAACAGACATCAACAGCGAACGAAACAGAGAAGCAA
TACGGCTATGGACACCACAAACACTAATAGTACTTTTTCTTCATTGCATT
CAGATTTTCAACGCCAAAGAGACTCTTCACAAAAAGCCATCAAGATTTCT
CCGTACCGGAGCATGGAGGGCGGTAAGATAGCATCCAGTGGGGGAGGAGG
GCGTTGTCTATCACCTATACATGAATTTTCTAACGCTACCACCCAGATGC
AAAGAAAACAGTCGTATGTTCGTTGGTTTGATGAGAGTTGAAATATTCgc
caaaaacttttgttgtaaaattttgctCATAACTTCCCTTTCAATTCATA
ACATCCGTCCTTGTCAAGTTTATTTATCTCACCTTTCTCTCTATCAGAAT
ATCGATCACGCTTTTTCAGAAAGATTTTATTAATTGGTAAGTGTGGtgta
agaaaaaactaaaaacaaaagaagaacaaCACAAGATTCAGG Coding sequence (CDS) from alignment at scaffold_233:723022..724763 >TCONS_00053740 ID=TCONS_00053740|Name=TCONS_00053740|organism=Clytia hemisphaerica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_233:723022..724763 (Clytia hemisphaerica)
ATGGATACATCATCTTTATCCAGTAGTAACAGTTATATGAATTATTACGA
CATGGTGACGTACGACTCATCTATCAATATGGATACTTACTCCGACGAAA
CGTCCGTCAACACCGACGATTTTTACCATGATAACCATTCAACGGTTACT
ACCAATGACTCATATTATGGCGGTGAATTCGATAACTTTTCGTTAGATTC
GCGTTGTTTTTACGAAGATACTGATTTCTCCTCCACAGAGGGAAGCCGAG
CTGGGAGCATCACCACTATGTCAAGAAGCACACCGGATAGTAGTCTACAT
TCGTCGTCCATGGGCCTGAATAAAGGTTCTCTGAATGTCATTCAACGAAT
ACCTCGTAAACAGAGTCGAGGTATCTTGAAAACCAAAAATGGCTCCTTTC
AGAATGATAACAATAACAATATAAATGTAAATAGGAACAGCCAATCGGCG
GATGAGGGCACAACGATTACTCATGAAACACTCGAAAAATTGCGCGAAAC
TGAATTGGAAGATGTCTTGCAATACGCTAGAGATATCATCAACCCTGATC
CTAAAGCTAAAATCACTTTTTGTACGCAATCTGCCAAAGTAGTGGAAGGC
TCTTTCAAACACATGCTTTCTATCAAAGAACTTTCTTCAAAAACAGGAGC
ATTCAAATATCGAACAATAGATATATTACGTAATACAGACGAGGAGATAG
GTATTAGTCTGCGTAGAGGAGATGGCTGGGAAAAAGGTGAAGGCATATAC
GTCTCCCGCATCTCACTTGGTTCtatttttgatcagtttgaaaTTCTACG
CGTGGGTGATGAAATAGTTCAAGTCAATAaagttgacgtcaaaaagatga
gcgttgatgacgtcatccgcCTCATGCACATACCAGAGAAACTATCAGTC
ACCGTTAAAATGTTGACACCTTTCTCAAAGAAACGTTTGGATAGAAGTGG
AAtagaagaactgaaaaagaatCGATATCTAAGTCACAGTACTGGACATT
TAAATAACcagcgaaaatttcttccaccTACTGTGTCGTCAAGGAGCAAC
GAATGTTTAAGTAAAGTAGCGCATCTACAAATAGGTGATAAACGTCAGTT
CAATTTAAACAACAGACATCAACAGCGAACGAAACAGAGAAGCAATACGG
CTATGGACACCACAAACACTAATAGTACTTTTTCTTCATTGCATTCAGAT
TTTCAACGCCAAAGAGACTCTTCACAAAAAGCCATCAAGATTTCTCCGTA
CCGGAGCATGGAGGGCGGTAAGATAGCATCCAGTGGGGGAGGAGGGCGTT
GTCTATCACCTATACATGAATTTTCTAACGCTACCACCCAGATGCAAAGA
AAACAGTCGTATGTTCGTTGGTTTGATGAGAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053740-exon-scaffold_233-1491911889:723022..724763 | TCONS_00053740-exon-scaffold_233-1491911889:723022..724763 | Clytia hemisphaerica | exon |
| TCONS_00053740-exon-scaffold_233-1510915933:723022..724763 | TCONS_00053740-exon-scaffold_233-1510915933:723022..724763 | Clytia hemisphaerica | exon |
| TCONS_00053740-exon-scaffold_233-1575043694:723022..724763 | TCONS_00053740-exon-scaffold_233-1575043694:723022..724763 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:723022..724763 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001478 | PDZ |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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