TCONS_00053651 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053651
Unique NameTCONS_00053651
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1237

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053651 ID=TCONS_00053651|Name=TCONS_00053651|organism=Clytia hemisphaerica|type=transcript|length=1237bp
tACAAAATAATAATGTTTTGGTCTTTCAAGAAGATATTTTTGGTATTGAC
AGTTATTTTATCGTTTGTTGTTTTGTCATGGTTAGCTTTTATTAGACATG
TGGGGCCACCACCTCATGTGCCTATACAAGAAGATTTCTTCCAGTCTGTG
AACCAAGCTCAACTCTCAGAGAAATGGAGTAANCTTTTATTAGACATGTG
GGACCACCACCTCATGTGCCTATACAAGAAGATTTCTTCCAGTCTGTGAA
CCAAGCTCAACTCTCAGAGAAATGGAGTAATGATGCAGAGCTTGATATAC
AAGATGAAGGAAAATTCCATTTGGTAACAAACATTGTTTTGGTGCAACAC
AAAGCTTATTCTGCTAATCTTCTTTATAATAATTTGCGACCACCAACCAT
GAATGAACTATCAGACAGGCAACATGAAATAGAGACATCTTTACAAGCTA
ATTTGAATCATCCAAAAGTAGCAGCTGTTCATATTCTATATTTTCATCCA
GCAGTAATGAGCTATTTACAtcgtttgaaaatgaaaaatagtaaaaaaat
gGTTTTACATTTGACAAGACGTGACCCTACTGTTGCTATTAACTTAGATt
acattcaaaaatatttgaaaaacaaatacGTTATGTTGATTCATCAAGAC
AATTTTCTTGGAGAAGGTTGGGAGGATATTAATTTTAACCTCCTCCGTAA
CCAAAGAATCATGTATGCTTTGACGAGATACTCTATAACTGAAAAGTTCC
CATGCAATGCTGCACAGACTGCTTCTTGCAACGCGGGTTCTATATATCTG
GGCTCACATGACACTTTCGTGTTTTATTCAGATAAAACATTTCCCAAAGA
AATGCTCAAAGAGATTGATATCATTCCTAGTTCTGCTGGTATGGAAAATG
TATTGATATGGTATTTTCGAAAGGAATTAAATTACCGTGTTACAAATCCA
TGTTTGAAGTTGAAAGTTTACCATAATCATTGTATACCTATTCGAGAGAA
GGGCAGGAAGCGGTATAATCGGAAAGGTAAAAATGGTTTGGCTCCATTTA
CAAACGACTTAGGGTGATTTTTTAAAACTATGATTTTCTGTCCCATCACT
GCCCCAAACAGTATGGTTTGGCTCCTCTTACCAACCAATTGGTGAGATTT
AAACTGTCGTTTTTAGTCCCAGTACTGTACCAGGAAGATTCTTCGTGTAG
AATTTCCCAAATCGGGCAAATTATGATCTTTCAAATT
Run BLAST on NCBI

transcript from alignment at scaffold_233:344693..345992-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053651 ID=TCONS_00053651|Name=TCONS_00053651|organism=Clytia hemisphaerica|type=transcript|length=1300bp|location=Sequence derived from alignment at scaffold_233:344693..345992- (Clytia hemisphaerica)
TACAAAATAATAATGTTTTGGTCTTTCAAGAAGATATTTTTGGTATTGAC
AGTTATTTTATCGTTTGTTGTTTTGTCATGGTTAGCTTTTATTAGACATG
TGGGGCCACCACCTCATGTGCCTATACAAGAAGATTTCTTCCAGTCTGTG
AACCAAGCTCAACTCTCAGAGAAATGGAGTAANCTTTTATTAGACATGTG
GGACCACCACCTCATGTGCCTATACAAGAAGATTTCTTCCAGTCTGTGAA
CCAAGCTCAACTCTCAGAGAAATGGAGTAATGATGCAGAGCTTGATATAC
AAGATGAAGGAAAATTCCATTTGGTAACAAACATTGTTTTGGTGCAACAC
AAAGCTTATTCTGCTAATCTTCTTTATAATAATTTGCGACCACCAACCAT
GAATGAACTATCAGACAGGCAACATGAAATAGAGACATCTTTACAAGCTA
ATTTGAATCATCCAAAAGTAGCAGCTGTTCATATTCTATATTTTCATCCA
GCAGTAATGAGCTATTTACATCGTTTGAAAATGAAAAACAGTAAAAAAAT
GGTTTTACATTNTGCAGTGATGAGTTATTTACATCGTTTGAAAATGAAAA
ATAGTAAAAAAATGGTTTTACATTTGACAAGACGTGACCCTACTGTTGCT
ATTAACTTAGATTACATTCAAAAATATTTGAAAAACAAATACGTTATGTT
GATTCATCAAGACAATTTTCTTGGAGAAGGTTGGGAGGATATTAATTTTA
ACCTCCTCCGTAACCAAAGAATCATGTATGCTTTGACGAGATACTCTATA
ACTGAAAAGTTCCCATGCAATGCTGCACAGACTGCTTCTTGCAACGCGGG
TTCTATATATCTGGGCTCACATGACACTTTCGTGTTTTATTCAGATAAAA
CATTTCCCAAAGAAATGCTCAAAGAGATTGATATCATTCCTAGTTCTGCT
GGTATGGAAAATGTATTGATATGGTATTTTCGAAAGGAATTAAATTACCG
TGTTACAAATCCATGTTTGAAGTTGAAAGTTTACCATAATCATTGTATAC
CTATTCGAGAGAAGGGCAGGAAGCGGTATAATCGGAAAGGTAAAAATGGT
TTGGCTCCATTTACAAACGACTTAGGGTGATTTTTTAAAACTATGATTTT
CTGTCCCATCACTGCCCCAAACAGTATGGTTTGGCTCCTCTTACCAACCA
ATTGGTGAGATTTAAACTGTCGTTTTTAGTCCCAGTACTGTACCAGGAAG
ATTCTTCGTGTAGAATTTCCCAAATCGGGCAAATTATGATCTTTCAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033841XLOC_033841Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053651-exon-scaffold_233-1575043694:345474..345992TCONS_00053651-exon-scaffold_233-1575043694:345474..345992Clytia hemisphaericaexon
TCONS_00053651-exon-scaffold_233-1575043694:344693..345410TCONS_00053651-exon-scaffold_233-1575043694:344693..345410Clytia hemisphaericaexon
TCONS_00053651-exon-scaffold_233-1510915933:345474..345992TCONS_00053651-exon-scaffold_233-1510915933:345474..345992Clytia hemisphaericaexon
TCONS_00053651-exon-scaffold_233-1510915933:344693..345410TCONS_00053651-exon-scaffold_233-1510915933:344693..345410Clytia hemisphaericaexon
TCONS_00053651-exon-scaffold_233-1491911889:345474..345992TCONS_00053651-exon-scaffold_233-1491911889:345474..345992Clytia hemisphaericaexon
TCONS_00053651-exon-scaffold_233-1491911889:344693..345410TCONS_00053651-exon-scaffold_233-1491911889:344693..345410Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:344693..345992 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.90365	0	1.9178	0.16724	0	0	0	0	0	0	0.755677	0	0	0	0	0	1.19553e-05	1.61067e-08	0	0	2.54691e-05	0	0.179129	0	0	0	0	0	0.00181548	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053651 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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