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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053563 ID=TCONS_00053563|Name=TCONS_00053563|organism=Clytia hemisphaerica|type=transcript|length=2623bp
ttattATTATAGATTGAATTTTTTAAGAGATACTTTACACCATCAGactt
gtaaaaaatattttagtcaGAGGAGAgacaaaggttttatttttattttg
cagCGTTTCTGTGTGATATAAAAAATGATATCAATTGTATTGTACCGTGC
ACGTATAGGAAGCTTTGCTTTCACAGCTCAAAGAAACATGAAATGTATCA
CTAAATCTATTGTTCTTGGTTCTGAACTTTCCAATGATGCTCTCTCAAAA
CTATTGAGACCTGTTCGTTTCGTAGCACTTTTAACCCTCCTATGTTTTGC
GATCCCAAAATCATTTGAACCAACAGAGGTTTTCACACCTTTAGATTTTA
ATTGGTTTTCAAGAAATGGAATTTTTGTTGAGTATCCCAATGCAGTGCAC
AAATTAGGAGATGAAAGCCTTATTTTTCTCAAAGTGAATAACACACTTCT
ACTATCAGGTGATGTAGAACTTAACCCTGGTCCTAGTGTTCAAGGTTCTT
TTCATCAGGGTAACCGTAAATTCGGTGAGACAGCAGGTATTCAATGCtcg
tcaaattgtttttttgctatttgctATGCCCAATTTAGAAAATTATCATT
GTGGAAGACTCATGATTTGGATTACGTTTTAGACCAAGGCGATCTGAATT
TCAAAAAGCTGGGTATCGTTGGTAACTCCCCATATATTGAAGAGTTTTCA
AGATCTATTGATATAGGAGGAAGTATGTGTGCactaaatttcaatatttt
tgaaggTTATTTTGAGACTGATAATATTACGGTAAATTTTGTTCAGGAGG
AACTCCTATTGCAGCATTCTGGTGCAGTTTTAGTGATAGCTGGAAATTGC
TTAGCTGTAATGCActacaacaaaaattattttctttttgactcGCATAG
CAGAGACTCTGAAGGCCATCAAATTGAAAGCGGAATTGGAACTtctgttc
ttttaaagtttgaCAGGTTACAAGAAATTAAACAGTATATAAGATCTGAG
TATAAGAACACAAATCTTTTTAACATTATTTATctcaaaactgatttttg
taatgagaaaaatataaaaagtactATTTCGACAGAAGTCATACGTAGAC
AAAGAAATGCTTCATATAAGAGATCAGTCGAGAAAATCAAAGGCACTGAA
AAGTATAAAGATTTATtgcaacaaaaaaatgtttctcttaAAAGGTTACG
TGAAAAAATTCAAGGCACTGATAAGCATGAACAAGaaaaggagaagaaaa
gacaGCGTCTAGAATTGAttaaaggatcagaaaaacatgaaaatgaaaag
gaaaataagcgTAGCGCTGCAAAATCTCTTTATAACTATAACAAAAAACT
GAATTTAGGAAAAAGGGTTGAGAATTtcaagcagaaaaaacaagacGGTC
CATATTTTATATGTGTAATATGTAACCGAGGCTTGTATAAAAAAGGAGTA
ATTACTTTTGATGAAAAGAAGTACACAATTGGCCTTGACGATTTGGAAAT
TGATCCTATTGCCTCCTATGACAGCAATTTCTATATATGTAAAACTTGtc
ataaaaaactaattaaaaatgaaattccatGTCAATCTGTTTCTAATAAA
CTCCAAGTTTTTAATCTCCCTGACCATTTGAGTGATATAAGAAAACTGGA
AAGAATTTTAGTAGCACAGCGgattttattttccaaagtcaTGATCATGC
GcaaaggggaattccctaaaTTGCAGGGTGCTATATGCAATGTTCCGATA
GAAACACCAAATGTATGTAAGGTTCTTCCTAGAGGAAATGATAGTAGTGG
TATCGTAAATGTTGAATTGAAAAGGAAGTTATCCTATAAAAACCCTGTTA
TTTCTCAACAAGTCAGgcgtcagaaaatttttgaaattttagatttttta
gtcAATAAtggggccccccagcggtttgcgtgaatgtgtgaatgggcttt
tttggttgcgtgaatgcgtgaaaatcgaaaaaaaattgcgtgaatgcgtg
aattgaaaaaacttgcgtgaacgtgaaaatccatatttctattgcgtgaa
cgcgtgaatttttccttttcacagtttgtagaaaacccctaggtgcgcac
ctatcccaaattcaagggatgccaggtgaaggtgcacaaaaaaatcagca
actttcaaattctctattttgtaaaacaattcatgatttagatgcgcttt
ctagcaatctagacaccttaaatttccagaatttttcgctcgggccaaac
atgtcccgaatcttaaataactctaattttccctcttgaaagtgtttgtt
taagataaaagcatggttatgcatgatgagtgattcagggccagggccag
ggccagccAGGGCCAGAGCCACTTGgggcaggaggcggccatgacttcac
cacgtttttgcaaataaaaagaaacttatttcaaagaaatttttacccat
gatgtagaTTTTCAataacctgatttcttggcaaaattagtctgaaatgg
agtcgtatttaagcacatcagagggttaaaatagattttttttctgtcgg
cgcaaaacatggttgcgcctccttagtcactatgttttcggcccctccac
gttaggaaattaattcgcaagcc Run BLAST on NCBI transcript from alignment at scaffold_233:545651..548273+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053563 ID=TCONS_00053563|Name=TCONS_00053563|organism=Clytia hemisphaerica|type=transcript|length=2623bp|location=Sequence derived from alignment at scaffold_233:545651..548273+ (Clytia hemisphaerica)
ttattATTATAGATTGAATTTTTTAAGAGATACTTTACACCATCAGactt
gtaaaaaatattttagtcaGAGGAGAgacaaaggttttatttttattttg
cagCGTTTCTGTGTGATATAAAAAATGATATCAATTGTATTGTACCGTGC
ACGTATAGGAAGCTTTGCTTTCACAGCTCAAAGAAACATGAAATGTATCA
CTAAATCTATTGTTCTTGGTTCTGAACTTTCCAATGATGCTCTCTCAAAA
CTATTGAGACCTGTTCGTTTCGTAGCACTTTTAACCCTCCTATGTTTTGC
GATCCCAAAATCATTTGAACCAACAGAGGTTTTCACACCTTTAGATTTTA
ATTGGTTTTCAAGAAATGGAATTTTTGTTGAGTATCCCAATGCAGTGCAC
AAATTAGGAGATGAAAGCCTTATTTTTCTCAAAGTGAATAACACACTTCT
ACTATCAGGTGATGTAGAACTTAACCCTGGTCCTAGTGTTCAAGGTTCTT
TTCATCAGGGTAACCGTAAATTCGGTGAGACAGCAGGTATTCAATGCtcg
tcaaattgtttttttgctatttgctATGCCCAATTTAGAAAATTATCATT
GTGGAAGACTCATGATTTGGATTACGTTTTAGACCAAGGCGATCTGAATT
TCAAAAAGCTGGGTATCGTTGGTAACTCCCCATATATTGAAGAGTTTTCA
AGATCTATTGATATAGGAGGAAGTATGTGTGCactaaatttcaatatttt
tgaaggTTATTTTGAGACTGATAATATTACGGTAAATTTTGTTCAGGAGG
AACTCCTATTGCAGCATTCTGGTGCAGTTTTAGTGATAGCTGGAAATTGC
TTAGCTGTAATGCActacaacaaaaattattttctttttgactcGCATAG
CAGAGACTCTGAAGGCCATCAAATTGAAAGCGGAATTGGAACTtctgttc
ttttaaagtttgaCAGGTTACAAGAAATTAAACAGTATATAAGATCTGAG
TATAAGAACACAAATCTTTTTAACATTATTTATctcaaaactgatttttg
taatgagaaaaatataaaaagtactATTTCGACAGAAGTCATACGTAGAC
AAAGAAATGCTTCATATAAGAGATCAGTCGAGAAAATCAAAGGCACTGAA
AAGTATAAAGATTTATtgcaacaaaaaaatgtttctcttaAAAGGTTACG
TGAAAAAATTCAAGGCACTGATAAGCATGAACAAGaaaaggagaagaaaa
gacaGCGTCTAGAATTGAttaaaggatcagaaaaacatgaaaatgaaaag
gaaaataagcgTAGCGCTGCAAAATCTCTTTATAACTATAACAAAAAACT
GAATTTAGGAAAAAGGGTTGAGAATTtcaagcagaaaaaacaagacGGTC
CATATTTTATATGTGTAATATGTAACCGAGGCTTGTATAAAAAAGGAGTA
ATTACTTTTGATGAAAAGAAGTACACAATTGGCCTTGACGATTTGGAAAT
TGATCCTATTGCCTCCTATGACAGCAATTTCTATATATGTAAAACTTGtc
ataaaaaactaattaaaaatgaaattccatGTCAATCTGTTTCTAATAAA
CTCCAAGTTTTTAATCTCCCTGACCATTTGAGTGATATAAGAAAACTGGA
AAGAATTTTAGTAGCACAGCGgattttattttccaaagtcaTGATCATGC
GcaaaggggaattccctaaaTTGCAGGGTGCTATATGCAATGTTCCGATA
GAAACACCAAATGTATGTAAGGTTCTTCCTAGAGGAAATGATAGTAGTGG
TATCGTAAATGTTGAATTGAAAAGGAAGTTATCCTATAAAAACCCTGTTA
TTTCTCAACAAGTCAGgcgtcagaaaatttttgaaattttagatttttta
gtcAATAAtggggccccccagcggtttgcgtgaatgtgtgaatgggcttt
tttggttgcgtgaatgcgtgaaaatcgaaaaaaaattgcgtgaatgcgtg
aattgaaaaaacttgcgtgaacgtgaaaatccatatttctattgcgtgaa
cgcgtgaatttttccttttcacagtttgtagaaaacccctaggtgcgcac
ctatcccaaattcaagggatgccaggtgaaggtgcacaaaaaaatcagca
actttcaaattctctattttgtaaaacaattcatgatttagatgcgcttt
ctagcaatctagacaccttaaatttccagaatttttcgctcgggccaaac
atgtcccgaatcttaaataactctaattttccctcttgaaagtgtttgtt
taagataaaagcatggttatgcatgatgagtgattcagggccagggccag
ggccagccAGGGCCAGAGCCACTTGgggcaggaggcggccatgacttcac
cacgtttttgcaaataaaaagaaacttatttcaaagaaatttttacccat
gatgtagaTTTTCAataacctgatttcttggcaaaattagtctgaaatgg
agtcgtatttaagcacatcagagggttaaaatagattttttttctgtcgg
cgcaaaacatggttgcgcctccttagtcactatgttttcggcccctccac
gttaggaaattaattcgcaagcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053563-exon-scaffold_233-1491911889:545651..548273 | TCONS_00053563-exon-scaffold_233-1491911889:545651..548273 | Clytia hemisphaerica | exon |
| TCONS_00053563-exon-scaffold_233-1510915933:545651..548273 | TCONS_00053563-exon-scaffold_233-1510915933:545651..548273 | Clytia hemisphaerica | exon |
| TCONS_00053563-exon-scaffold_233-1575043694:545651..548273 | TCONS_00053563-exon-scaffold_233-1575043694:545651..548273 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:545651..548273 + |
Blast
The following BLAST results are available for this feature:
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