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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053497 ID=TCONS_00053497|Name=TCONS_00053497|organism=Clytia hemisphaerica|type=transcript|length=1703bp
GCagtatttgtttgtttttagccattaaaaaataacaataaaaaaaatag
cCAGCagttcaaaaacatttcaagaTGACTGTACTGTCATTTTTTGGTTG
CACATTCATTGCATTTGGACCATCAGTGGCAATGTTTGCTCTAACTGTGG
CTCCTGATGCACAACAGGTCATTGTTTTCATCAGCAGTGCTTTCTGCTGG
TTACTCTCATTGCTGGCAACTTCATTACTATGGTTAGGTATACAGCATGT
TGTAGGGCGGTTGATTATCATGGTCCTAATATCAGTTTTATTTCAAGAAT
TATTCAGATTTGTATTATGGAAAATTGTCAGGCGGGCTGAAGCAGGCCTT
ATTGAAATGACAAACAACCACTCTCCGTACAGGAAGCTATATTTTCATTA
TGTTGCTGGACTTGGTTTTGGCTTTATGAGCGGTTTATTTGCAATGGTCA
ATATTCTAGCAGATACATCAGGTCCTGGAACTCTAGGTCTCAATGGTCAT
GATCCAAACTTTGCTGTCATATCAGCATTTTTAACGAACTGTATGATCTT
GCTGAACACGTTTTGGGGAATTGTATTTTTTGAAGGATTAGATTATCGTA
AATGGATACATATCATTGCAGTACCAGTTTCACATGTTTTAGTATCATGT
TTGaCTCTTCTCAATGAACAGCAAATGTATTGGCCAGCATTAACTGTAGG
TTACACACTAACTGTTATTTTTGGATTATGGAGTTATTTATGTGTTGGTG
GAAGTATAGAAAATCTGAAACGTGTTTTTACTGCAAGACATACATCGACA
TCATTGCTCGATAATAATTGAAAAAACTAAAAGTGTTGGTGTTTGAGTTT
TTGATTTGCCAGAGTCTTTGACAATGGAGGTGGGATATGCTGGATTATGT
TGAATTCTGGATATCTTTTGATTTATAAGATGATTTTTAATAGCAATTCT
CAATAATAAATACCCAGAAGAAAAGTTTAATTGATAATGATATCAACTGA
AACCTGGTACTTACTTCGGATGAAGTTGTTACTTGGGGTAAACATAGTTT
TCAATGTTGGCAATAAACAGTGATGATAATCTGATATGTGATAGTCTGGA
AAAAAATCATCTGTGATAATActattttgttgatattttgtaaaaattaa
cgAGCATTTTTTGTATCATAATGTTTTAATTTCACACACAATACAAAATT
TGATTTATATTCAGGGTTGGAATTTTTTCAGTGTTGTTTTGGGTGCTTTA
AGACATTCTTACGGTCAAGTTCTACGGCGTGAGAGCTCTTTACGAGGAAA
AATAAGTAATCCGCatttaatttttccttttttaagcGAATGACTTGAAA
AAGAATTCACCTATTGAAAAGCTTTCATTTGAATCCATTATGCTTTGAAG
GTTTGAATCATAAAAATAATTGGGGGTATTAGaccttttatttttttgta
taattttgtaaaattttagacTTATTGCCATAATATAATTGCAGTAGAAA
TATAAATTGAATTCTTTTGAGGTATTTCTTAGTAGCATACTTGGAAAGAC
AACAACCAGTTGAAAATATTGTGTCTTGGTAAAATTTGATATAATTTTTA
TGGTAGGTGCATGCGTAATTATTTTCACGTTCTATATAACTGGAGATAAT
AATTATAATATGGCTAAAGTTTACTAGGTTCTTTTTCAATAATGGAAAGT
TCC Run BLAST on NCBI protein sequence of TCONS_00053497-protein >TCONS_00053497-protein ID=TCONS_00053497-protein|Name=TCONS_00053497-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MTVLSFFGCTFIAFGPSVAMFALTVAPDAQQVIVFISSAFCWLLSLLATS
LLWLGIQHVVGRLIIMVLISVLFQELFRFVLWKIVRRAEAGLIEMTNNHS
PYRKLYFHYVAGLGFGFMSGLFAMVNILADTSGPGTLGLNGHDPNFAVIS
AFLTNCMILLNTFWGIVFFEGLDYRKWIHIIAVPVSHVLVSCLTLLNEQQ
MYWPALTVGYTLTVIFGLWSYLCVGGSIENLKRVFTARHTSTSLLDNN Run BLAST on NCBI transcript from alignment at scaffold_232:3452..7142+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053497 ID=TCONS_00053497|Name=TCONS_00053497|organism=Clytia hemisphaerica|type=transcript|length=3691bp|location=Sequence derived from alignment at scaffold_232:3452..7142+ (Clytia hemisphaerica)
GCagtatttgtttgtttttagccattaaaaaataacaataaaaaaaatag
cCAGCagttcaaaaacatttcaagaTGACTGTACTGTCATTTTTTGGTTG
CACATTCATTGCATTTGGACCATCAGTGGCAATGTTTGCTCTAACTGTGG
CTCCTGATGCACAACAGGTCATTGTTTTCATCAGCAGGTgagaaataata
aaattttgataataattaatttaaaatttaaaaatttttgttttagttaA
TTCTAGGTAATTTCAAGAAATATTCAGAGGCTATTTAGAAGGATCAAGCA
CAGGGACACAATTCATACTTTGGTATTGTCTCTCTAGGCGCTGACAAGcc
ccattttcatttttccattttgagtttcatatatatatattttcctaATC
AAGATCTCTTGTTGAATAAGTAACTCTAGCATTAAAGCTACGCACATTAG
TAAAAAACTGTGTAAAAGTgtgtactttatattttcttgatGCAGGagtt
ttttaatttattcaacATGAAATTATGATGACTTATGATTAGGAAAAGTC
GATTTTGTAACGTGTTCTTTTTTACTTAATAGTGCTTTCTGCTGGTTACT
CTCATTGCTGGCAACTTCATTACTATGGTTAGGTATACAGCATGTTGTAG
GGCGGTTGATTATCATGGTCCTAATATCAGTTTTATTTCAAGAATTATTC
AGATTTGTATTATGGAAAATTGTCAGGTTTGTCTGTTGTTATATTTTTTC
AGATACATTATCTGGTAGTCTGTTGTGTTACGTATCATTATAGATATTTT
TCAACAATAAGAGGAGGTCTATTTTGGGACAGGGAAGCAATCAATTTTCT
AAGGTCCCCCCAAATTGAAAGGTAGTATCAAAAACTAGTTAAAGGTTAAA
AAATGTATTTCATTCTAAATTTGAACCAGTGAAGCTTTAGTTATTGAACC
TATTGCTCGAGattttgtttattgttttttaGGCGGGCTGAAGCAGGCCT
TATTGAAATGACAAACAACCACTCTCCGTACAGGAAGCTATATTTTCATT
ATGGTCAGTAtgataaactttttttcaattctcaAAAAACCTCATTGCAA
ATGTATGACCTTGTGTGTCGTAAGTCTTGTTGTCTATCCGAAATATTTAT
TGGCAGGCTGAAGACTTCCAAATTCTGTTTTGTCAGCAATTTAGCATACC
TTCTTAACTGTTTCCTAAAATTCTCTTCATNAAATTCTGTTTTGTCAGCA
ATTTAGCATACCTTCTTAACTGTTTCCTAAAATTCTCTTCATCCCTTGTG
GTGCGCAtgttcaaatattttattttcaggatACAGGAAGGTCTATTTCC
CAGATTAATTAAATTACCAAAACTTCTGTTTCTACTTTGTAGTTGCTGGA
CTTGGTTTTGGCTTTATGAGCGGTTTATTTGCAATGGTCAATATTCTAGC
AGATACATCAGGTCCTGGAACTCTAGGTCTCAATGGTCATGATCCAAACT
TTGCTGTCATATCAGGTGAGTCACATTCTAACTAAAAGTTTATACTTCTT
GAGATAAAACATTAAAAGAACAAGCTTATTAAGAAACCAATTTGTAGAAA
GTTTATTTGCGAAGGGATAAAGAGCTTCACAACCCAAGTTCTTATTTTAA
ATGGTGTATCGTGTACACATGTACGCCAGTTTCTCAAGGTCTTACTAAAA
TTAGAAATTGCAGAACTTAAGGTAACaagtattttgttttaaaagagATT
CCAGCTACATAAAATGTATTAGAGTTGGTAGGCTTTTACAccatattatt
ttgaaaatattgcccttttaaaataaaaaattcgattTGAATATAATCAC
TTCTTTTTAGCTCGAATTTGTCTTATTTTCATTCACAAATCTTGCACTGT
TTTGACTATGACTagtgggctcttccagaaaatgtccgtgcATGGGggag
gggtagtgaaaaatctacaaaatttgccttgtccggggggtcaactgatg
cttgtccacgGGGGGGGGGGTATACCTGCTATCAAAAGTCACAATGCCCG
GGGGGTAAATTTTCAAATATCCAAATATCCTCCACCCCCCATATTCAAAT
TTTTTCTGGAAGAGTCCATACGGCATTAATAGTCAAAATTATACAATTTT
GCCTTTTTAGCCACTCTTTGACATTTTTGAACAGAGAAAGTTGCAGGCTA
TTCTTTATTAATGATTTACAATTTCCTTGTCTTCTTTTATTATTTTCAGC
ATTTTTAACGAACTGTATGATCTTGCTGAACACGTTTTGGGGAATTGTAT
TTTTTGAAGGATTAGATTATCGTAAATGGATACATATCATTGCAGTACCA
GTTTCACATGTTTTAGTATCATGTTTGGTAAGTATTATAACGAGGAAACC
TTTATTTGAGCTCTTTCTTTGGCTGTATCTTTAAAGGATAACCTTTCCTC
GAACAGACACCATAAGACCTCTTGAAGTGTTATAATTATAATGGGAAAAT
TCGAAGGTTTCTAcgttaagttttatttttggaaattttcattgAGATTT
TAGGCTTTGCTACCtgtattttttctcattttttctcaGATTATCATCGT
TAAATCATCTTTTATacatcatatttttttcattttcacagaCTCTTCTC
AATGAACAGCAAATGTATTGGCCAGCATTAACTGTAGGTTACACACTAAC
TGTTATTTTTGGATTATGGAGTTATTTATGTGTTGGTGGAAGTATAGAAA
ATCTGAAACGTGTTTTTACTGCAAGACATACATCGACATCATTGCTCGAT
AATAATTGAAAAAACTAAAAGTGTTGGTGTTTGAGTTTTTGATTTGCCAG
AGTCTTTGACAATGGAGGTGGGATATGCTGGATTATGTTGAATTCTGGAT
ATCTTTTGATTTATAAGATGATTTTTAATAGCAATTCTCAATAATAAATA
CCCAGAAGAAAAGTTTAATTGATAATGATATCAACTGAAACCTGGTACTT
ACTTCGGATGAAGTTGTTACTTGGGGTAAACATAGTTTTCAATGTTGGCA
ATAAACAGTGATGATAATCTGATATGTGATAGTCTGGAAAAAAATCATCT
GTGATAATActattttgttgatattttgtaaaaattaacgAGCATTTTTT
GTATCATAATGTTTTAATTTCACACACAATACAAAATTTGATTTATATTC
AGGGTTGGAATTTTTTCAGTGTTGTTTTGGGTGCTTTAAGACATTCTTAC
GGTCAAGTTCTACGGCGTGAGAGCTCTTTACGAGGAAAAATAAGTAATCC
GCatttaatttttccttttttaagcGAATGACTTGAAAAAGAATTCACCT
ATTGAAAAGCTTTCATTTGAATCCATTATGCTTTGAAGGTTTGAATCATA
AAAATAATTGGGGGTATTAGaccttttatttttttgtataattttgtaaa
attttagacTTATTGCCATAATATAATTGCAGTAGAAATATAAATTGAAT
TCTTTTGAGGTATTTCTTAGTAGCATACTTGGAAAGACAACAACCAGTTG
AAAATATTGTGTCTTGGTAAAATTTGATATAATTTTTATGGTAGGTGCAT
GCGTAATTATTTTCACGTTCTATATAACTGGAGATAATAATTATAATATG
GCTAAAGTTTACTAGGTTCTTTTTCAATAATGGAAAGTTCC Coding sequence (CDS) from alignment at scaffold_232:3452..7142+ >TCONS_00053497 ID=TCONS_00053497|Name=TCONS_00053497|organism=Clytia hemisphaerica|type=CDS|length=4482bp|location=Sequence derived from alignment at scaffold_232:3452..7142+ (Clytia hemisphaerica)
aTGACTGTACTGTCATTTTTTGGTTGCACATTCATTGCATTTGGACCATC
AGTGGCAATGTTTGCTCTAACTGTGGCTCCTGATGCACAACAGGTCATTG
TTTTCATCAGCAGTGCTTTCTGCTGGTTACTCTCATTGCTGGCAACTTCA
TTACTATGGTTAGGTATACAGCATGTTGTAGGGCGGTTGATTATCATGGT
CCTAATATCAGTTTTATTTCAAGAATTATTCAGATTTGTATTATGGAAAA
TTGTCAGGCGGGCTGAAGCAGGCCTTATTGAAATGACAAACAACCACTCT
CCGTACAGGAAGCTATATTTTCATTATGTTGCTGGACTTGGTTTTGGCTT
TATGAGCGGTTTATTTGCAATGGTCAATATTCTAGCAGATACATCAGGTC
CTGGAACTCTAGGTCTCAATGGTCATGATCCAAACTTTGCTGTCATATCA
GCATTTTTAACGAACTGTATGATCTTGCTGAACACGTTTTGGGGAATTGT
ATTTTTTGAAGGATTAGATTATCGTAAATGGATACATATCATTGCAGTAC
CAGTTTCACATGTTTTAGTATCATGTTTGaCTCTTCTCAATGAACAGCAA
ATGTATTGGCCAGCATTAACTGTAGGTTACACACTAACTGTTATTTTTGG
ATTATGGAGTTATTTATGTGTTGGTGGAAGTATAGAAAATCTGAAACGTG
TTTTTACTGCAAGACATACATCGACATCATTGCTCGATAATAATTGAaTG
ACTGTACTGTCATTTTTTGGTTGCACATTCATTGCATTTGGACCATCAGT
GGCAATGTTTGCTCTAACTGTGGCTCCTGATGCACAACAGGTCATTGTTT
TCATCAGCAGTGCTTTCTGCTGGTTACTCTCATTGCTGGCAACTTCATTA
CTATGGTTAGGTATACAGCATGTTGTAGGGCGGTTGATTATCATGGTCCT
AATATCAGTTTTATTTCAAGAATTATTCAGATTTGTATTATGGAAAATTG
TCAGGCGGGCTGAAGCAGGCCTTATTGAAATGACAAACAACCACTCTCCG
TACAGGAAGCTATATTTTCATTATGTTGCTGGACTTGGTTTTGGCTTTAT
GAGCGGTTTATTTGCAATGGTCAATATTCTAGCAGATACATCAGGTCCTG
GAACTCTAGGTCTCAATGGTCATGATCCAAACTTTGCTGTCATATCAGCA
TTTTTAACGAACTGTATGATCTTGCTGAACACGTTTTGGGGAATTGTATT
TTTTGAAGGATTAGATTATCGTAAATGGATACATATCATTGCAGTACCAG
TTTCACATGTTTTAGTATCATGTTTGaCTCTTCTCAATGAACAGCAAATG
TATTGGCCAGCATTAACTGTAGGTTACACACTAACTGTTATTTTTGGATT
ATGGAGTTATTTATGTGTTGGTGGAAGTATAGAAAATCTGAAACGTGTTT
TTACTGCAAGACATACATCGACATCATTGCTCGATAATAATTGAaTGACT
GTACTGTCATTTTTTGGTTGCACATTCATTGCATTTGGACCATCAGTGGC
AATGTTTGCTCTAACTGTGGCTCCTGATGCACAACAGGTCATTGTTTTCA
TCAGCAGTGCTTTCTGCTGGTTACTCTCATTGCTGGCAACTTCATTACTA
TGGTTAGGTATACAGCATGTTGTAGGGCGGTTGATTATCATGGTCCTAAT
ATCAGTTTTATTTCAAGAATTATTCAGATTTGTATTATGGAAAATTGTCA
GGCGGGCTGAAGCAGGCCTTATTGAAATGACAAACAACCACTCTCCGTAC
AGGAAGCTATATTTTCATTATGTTGCTGGACTTGGTTTTGGCTTTATGAG
CGGTTTATTTGCAATGGTCAATATTCTAGCAGATACATCAGGTCCTGGAA
CTCTAGGTCTCAATGGTCATGATCCAAACTTTGCTGTCATATCAGCATTT
TTAACGAACTGTATGATCTTGCTGAACACGTTTTGGGGAATTGTATTTTT
TGAAGGATTAGATTATCGTAAATGGATACATATCATTGCAGTACCAGTTT
CACATGTTTTAGTATCATGTTTGaCTCTTCTCAATGAACAGCAAATGTAT
TGGCCAGCATTAACTGTAGGTTACACACTAACTGTTATTTTTGGATTATG
GAGTTATTTATGTGTTGGTGGAAGTATAGAAAATCTGAAACGTGTTTTTA
CTGCAAGACATACATCGACATCATTGCTCGATAATAATTGAaTGACTGTA
CTGTCATTTTTTGGTTGCACATTCATTGCATTTGGACCATCAGTGGCAAT
GTTTGCTCTAACTGTGGCTCCTGATGCACAACAGGTCATTGTTTTCATCA
GCAGTGCTTTCTGCTGGTTACTCTCATTGCTGGCAACTTCATTACTATGG
TTAGGTATACAGCATGTTGTAGGGCGGTTGATTATCATGGTCCTAATATC
AGTTTTATTTCAAGAATTATTCAGATTTGTATTATGGAAAATTGTCAGGC
GGGCTGAAGCAGGCCTTATTGAAATGACAAACAACCACTCTCCGTACAGG
AAGCTATATTTTCATTATGTTGCTGGACTTGGTTTTGGCTTTATGAGCGG
TTTATTTGCAATGGTCAATATTCTAGCAGATACATCAGGTCCTGGAACTC
TAGGTCTCAATGGTCATGATCCAAACTTTGCTGTCATATCAGCATTTTTA
ACGAACTGTATGATCTTGCTGAACACGTTTTGGGGAATTGTATTTTTTGA
AGGATTAGATTATCGTAAATGGATACATATCATTGCAGTACCAGTTTCAC
ATGTTTTAGTATCATGTTTGaCTCTTCTCAATGAACAGCAAATGTATTGG
CCAGCATTAACTGTAGGTTACACACTAACTGTTATTTTTGGATTATGGAG
TTATTTATGTGTTGGTGGAAGTATAGAAAATCTGAAACGTGTTTTTACTG
CAAGACATACATCGACATCATTGCTCGATAATAATTGAaTGACTGTACTG
TCATTTTTTGGTTGCACATTCATTGCATTTGGACCATCAGTGGCAATGTT
TGCTCTAACTGTGGCTCCTGATGCACAACAGGTCATTGTTTTCATCAGCA
GTGCTTTCTGCTGGTTACTCTCATTGCTGGCAACTTCATTACTATGGTTA
GGTATACAGCATGTTGTAGGGCGGTTGATTATCATGGTCCTAATATCAGT
TTTATTTCAAGAATTATTCAGATTTGTATTATGGAAAATTGTCAGGCGGG
CTGAAGCAGGCCTTATTGAAATGACAAACAACCACTCTCCGTACAGGAAG
CTATATTTTCATTATGTTGCTGGACTTGGTTTTGGCTTTATGAGCGGTTT
ATTTGCAATGGTCAATATTCTAGCAGATACATCAGGTCCTGGAACTCTAG
GTCTCAATGGTCATGATCCAAACTTTGCTGTCATATCAGCATTTTTAACG
AACTGTATGATCTTGCTGAACACGTTTTGGGGAATTGTATTTTTTGAAGG
ATTAGATTATCGTAAATGGATACATATCATTGCAGTACCAGTTTCACATG
TTTTAGTATCATGTTTGaCTCTTCTCAATGAACAGCAAATGTATTGGCCA
GCATTAACTGTAGGTTACACACTAACTGTTATTTTTGGATTATGGAGTTA
TTTATGTGTTGGTGGAAGTATAGAAAATCTGAAACGTGTTTTTACTGCAA
GACATACATCGACATCATTGCTCGATAATAATTGAaTGACTGTACTGTCA
TTTTTTGGTTGCACATTCATTGCATTTGGACCATCAGTGGCAATGTTTGC
TCTAACTGTGGCTCCTGATGCACAACAGGTCATTGTTTTCATCAGCAGTG
CTTTCTGCTGGTTACTCTCATTGCTGGCAACTTCATTACTATGGTTAGGT
ATACAGCATGTTGTAGGGCGGTTGATTATCATGGTCCTAATATCAGTTTT
ATTTCAAGAATTATTCAGATTTGTATTATGGAAAATTGTCAGGCGGGCTG
AAGCAGGCCTTATTGAAATGACAAACAACCACTCTCCGTACAGGAAGCTA
TATTTTCATTATGTTGCTGGACTTGGTTTTGGCTTTATGAGCGGTTTATT
TGCAATGGTCAATATTCTAGCAGATACATCAGGTCCTGGAACTCTAGGTC
TCAATGGTCATGATCCAAACTTTGCTGTCATATCAGCATTTTTAACGAAC
TGTATGATCTTGCTGAACACGTTTTGGGGAATTGTATTTTTTGAAGGATT
AGATTATCGTAAATGGATACATATCATTGCAGTACCAGTTTCACATGTTT
TAGTATCATGTTTGaCTCTTCTCAATGAACAGCAAATGTATTGGCCAGCA
TTAACTGTAGGTTACACACTAACTGTTATTTTTGGATTATGGAGTTATTT
ATGTGTTGGTGGAAGTATAGAAAATCTGAAACGTGTTTTTACTGCAAGAC
ATACATCGACATCATTGCTCGATAATAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053497-exon-scaffold_232-1491911889:3452..3638 | TCONS_00053497-exon-scaffold_232-1491911889:3452..3638 | Clytia hemisphaerica | exon |
| TCONS_00053497-exon-scaffold_232-1510915933:3452..3638 | TCONS_00053497-exon-scaffold_232-1510915933:3452..3638 | Clytia hemisphaerica | exon |
| TCONS_00053497-exon-scaffold_232-1575043694:3452..3638 | TCONS_00053497-exon-scaffold_232-1575043694:3452..3638 | Clytia hemisphaerica | exon |
| TCONS_00053497-exon-scaffold_232-1491911889:4034..4177 | TCONS_00053497-exon-scaffold_232-1491911889:4034..4177 | Clytia hemisphaerica | exon |
| TCONS_00053497-exon-scaffold_232-1510915933:4034..4177 | TCONS_00053497-exon-scaffold_232-1510915933:4034..4177 | Clytia hemisphaerica | exon |
| TCONS_00053497-exon-scaffold_232-1575043694:4034..4177 | TCONS_00053497-exon-scaffold_232-1575043694:4034..4177 | Clytia hemisphaerica | exon |
| TCONS_00053497-exon-scaffold_232-1491911889:4434..4504 | TCONS_00053497-exon-scaffold_232-1491911889:4434..4504 | Clytia hemisphaerica | exon |
| TCONS_00053497-exon-scaffold_232-1510915933:4434..4504 | TCONS_00053497-exon-scaffold_232-1510915933:4434..4504 | Clytia hemisphaerica | exon |
| TCONS_00053497-exon-scaffold_232-1575043694:4434..4504 | TCONS_00053497-exon-scaffold_232-1575043694:4434..4504 | Clytia hemisphaerica | exon |
| TCONS_00053497-exon-scaffold_232-1491911889:4844..4966 | TCONS_00053497-exon-scaffold_232-1491911889:4844..4966 | Clytia hemisphaerica | exon |
| TCONS_00053497-exon-scaffold_232-1510915933:4844..4966 | TCONS_00053497-exon-scaffold_232-1510915933:4844..4966 | Clytia hemisphaerica | exon |
| TCONS_00053497-exon-scaffold_232-1575043694:4844..4966 | TCONS_00053497-exon-scaffold_232-1575043694:4844..4966 | Clytia hemisphaerica | exon |
| TCONS_00053497-exon-scaffold_232-1491911889:5701..5828 | TCONS_00053497-exon-scaffold_232-1491911889:5701..5828 | Clytia hemisphaerica | exon |
| TCONS_00053497-exon-scaffold_232-1510915933:5701..5828 | TCONS_00053497-exon-scaffold_232-1510915933:5701..5828 | Clytia hemisphaerica | exon |
| TCONS_00053497-exon-scaffold_232-1575043694:5701..5828 | TCONS_00053497-exon-scaffold_232-1575043694:5701..5828 | Clytia hemisphaerica | exon |
| TCONS_00053497-exon-scaffold_232-1491911889:6093..7142 | TCONS_00053497-exon-scaffold_232-1491911889:6093..7142 | Clytia hemisphaerica | exon |
| TCONS_00053497-exon-scaffold_232-1510915933:6093..7142 | TCONS_00053497-exon-scaffold_232-1510915933:6093..7142 | Clytia hemisphaerica | exon |
| TCONS_00053497-exon-scaffold_232-1575043694:6093..7142 | TCONS_00053497-exon-scaffold_232-1575043694:6093..7142 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_232 | supercontig | scaffold_232:3452..7142 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009294 | Aph-1 |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0016485 | protein processing |
| GO:0043085 | positive regulation of catalytic activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0043085 |
positive regulation of catalytic activity |
| biological_process |
GO:0016485 |
protein processing |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00053497 vs. Swiss-Prot (Human)
Match: APH1A (Gamma-secretase subunit APH-1A OS=Homo sapiens GN=APH1A PE=1 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 4.923e-50 Identity = 105/248 (42.34%), Postives = 157/248 (63.31%), Query Frame = 3
Query: 90 FFGCTFIAFGPSVAMFALTVAPDAQQVIVFISSAFCXXXXXXXXXXXXXGIQHVVGR---------LIIMVLISVLFQELFRFVLWKIVRRAEAGLIEMTNN-HSPYRKLYFHYVAGLGFGFMSGLFAMVNILADTSGPGTLGLNGHDPNFAVISAFLTNCMILLNTFWGIVFFEGLDYRKWIHIIAVPVSHVLVSCLTLLNEQQMYWPALTVGYTLTVIFGLWSYLCVGGSIENLKRVFTARHTSTS 803
FFGCTF+AFGP+ A+F +TVA D +VI+ ++ AF WL+SLL S++W + HV R LI +SVL QE+FRF +K++++A+ GL ++ + SP YV+GL FG +SG+F+++NILAD GPG +G++G P + + SAFLT +ILL+TFWG+VFF+ + R++ + V SH+L S LT LN Y +L Y +TV GLW+++ GGS+ +++R R S
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLRVIILVAGAFFWLVSLLLASVVWFILVHVTDRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTSGLTFLNP--WYEASLLPIYAVTVSMGLWAFITAGGSLRSIQRSLLCRRQEDS 251
The following BLAST results are available for this feature:
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