TCONS_00053454 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053454
Unique NameTCONS_00053454
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2191

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053454 ID=TCONS_00053454|Name=TCONS_00053454|organism=Clytia hemisphaerica|type=transcript|length=2191bp
CTTATATCAACACAAACATTTTAGAAATTGTAGATTATTTTGAAGTCATT
GTTACAGCGAGGGAAATGAAGTTGAAGACACTTCGAATATAACAACCTGA
TGATCTAGAGATCACCGAAAGATTACCTGACAAACCAGAGAAACCAGACA
AACCAGACAAACCAGAGAAACCAGAGAAACCAGACAAACCAGAGAAACCA
GAGAAACCAGTGAAGCAAAGATTCCAAGCTTTCCTTAGACCAACGACGCT
AAAAGCTAGGGTGTAAAAACCCTAGGGACAAAACTCACACACATATACGT
AACAAGAAAATGGTGAAAGAACTCTTTTCAAACGTATGTGAGCGGTTCCA
TTTATACGAGCGTTTACCGGCCGATGTGGAGACTGGGGACGAACAGGATG
GTGGAGAGTGTTCAGAGGATCAATCACGTGACAAAATCTCCTCCTCTAAT
GCTTTTTGGAATATCTGCAATTCCATTCAAGGTGTTGCCATCCTAGCGAT
GCCTTACGTCATCAAAGGCGGTGGGTGGTGGAGTATCGTTGCCTTGGTGA
TCGTAGCAGCCATTTCGAATTACACTGGCCAAATCTTGATCAAGTGTCAT
TATGATGAGATGGAGAATGAGGAGGATGGATCAACCACTATTGTCAGAAC
CAGGACCAGTTACGCAGAAGTTGGAGAAGCGATTTGGCCTCAATACGGTC
GTCGAATTATACTGCTTGTACAAGTGTTGGAATTATTGTTCATGGCAACC
CTGTATCCAATCGTTTCTGTTTCCGTCCTACACATTctttttcccgtcaa
aatttttccatCAGGAGTCTGGATCCTAGTCTTCGGATTGATCGTTTATC
CGAACGTTTTTCTAAAGAAATTGTACCATATTTCGTTAATGAGTACGGTC
ACGGTTGTTTCCGCTGCTTTTGTGACAGCGGTCATTATCATGTACTGTTT
CACATCCGTTGCTACGTGGAAGGTCGGTCAGATGTCAATCATCTCTGCAA
AGGAGTTTATTTCAGCCATTGGTGTCATCATAGCCTCCTATTCTTCTCAA
ATGTATCTCTCCGTCATAGAGGCTAGTATGCGGGAACCACAAAAAGTTGG
AACTGTCATGAATCTAGGATACACTGCTATGACATTGTTGAAAATTGGGA
TAGGCGTTGTGGCTTACATGACATTTGGCGACAGTACGTTGCAAGTGGTG
GCCTTAAATCTGCCACCTGGAGTCCTTCTAACTATGGTGAATATAGTAGT
GCTGTTCCTAGCCTTATCCTCCTATACCCTCCCTATGTTTACTGCTTTTG
AGATTATCGAGAATGATTCCTCAATCACCGAAAGCACTGGAGATGTTGAT
AAAGGAATGAAACGGCGCGTTTTGGTGCGCACTGGCCTCGTTTTGGTGAC
GCTTCTGATGGCGATCAGTGTTCCACATTTCTGCTTGGTCTTATCATTCA
TTGGCTGTTTCACCGGATGCTTCCTTGAAATCATTTTCCCATGTGCTTTT
TACTGTATCTTGAAATGGGACAAAATAAACACTTTCGAATtggttttcaa
tattttgttgaTCGTTGGTAGTCTTCTTTTCATGGGAATTGGAATGTATT
TCTCAGGATTGGCCATGGTACACGCGTTCAAATATAACACTAAAGAAGTA
TGGTCTGTTGATTAGAAAGCTGGTTACTTggatttttgaatttcacttgC
AGGACCTTTCTGCTTGATAAAAATAGGTTTTCAAATAGTCAATTTGTACA
TTTGGCCTGGCATGAAGGAAAAAAGAGTGGACTTGGTTGATTTTACACAA
GATGATAAAGTATCTGGTATGATATATTTTTATGACAtaccgggtgtctc
tgaaaaaacttccccctgtttgattcaaaattgcgaaaaagtgaaaaaat
gtattagcttgattttttcgaaatcgtttagaggagggtttaacttaaat
tttNGGGACAGTACGTTGCAAGTGGTGGCCTTAAATCTGCCACCTGGAGT
CCTTCTAACTATGGTCAATATAGTAGTTCTGTTCCTAGCCTTATCCTCCT
ATACCCTCCCTATGTTTACTGCTTTTGAGATTCTCGAGAACGATTCCTCT
ATCACCGAAAGCACTGGAGATGTTGATAAAGGAATGAAACGGCGCGTTTT
GGTGCGCACTGGCCTCGTTTTGGTGACGCTTCTGATGGCGA
Run BLAST on NCBI

protein sequence of TCONS_00053454-protein

>TCONS_00053454-protein ID=TCONS_00053454-protein|Name=TCONS_00053454-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp
MVKELFSNVCERFHLYERLPADVETGDEQDGGECSEDQSRDKISSSNAFW
NICNSIQGVAILAMPYVIKGGGWWSIVALVIVAAISNYTGQILIKCHYDE
MENEEDGSTTIVRTRTSYAEVGEAIWPQYGRRIILLVQVLELLFMATLYP
IVSVSVLHILFPVKIFPSGVWILVFGLIVYPNVFLKKLYHISLMSTVTVV
SAAFVTAVIIMYCFTSVATWKVGQMSIISAKEFISAIGVIIASYSSQMYL
SVIEASMREPQKVGTVMNLGYTAMTLLKIGIGVVAYMTFGDSTLQVVALN
LPPGVLLTMVNIVVLFLALSSYTLPMFTAFEIIENDSSITESTGDVDKGM
KRRVLVRTGLVLVTLLMAISVPHFCLVLSFIGCFTGCFLEIIFPCAFYCI
LKWDKINTFELVFNILLIVGSLLFMGIGMYFSGLAMVHAFKYNTKEVWSV
D
Run BLAST on NCBI

transcript from alignment at scaffold_231:188169..190855-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053454 ID=TCONS_00053454|Name=TCONS_00053454|organism=Clytia hemisphaerica|type=transcript|length=2687bp|location=Sequence derived from alignment at scaffold_231:188169..190855- (Clytia hemisphaerica)
CTTATATCAACACAAACATTTTAGAAATTGTAGATTATTTTGAAGTCATT
GTTACAGCGAGGGAAATGAAGTTGAAGACACTTCGAATATAACAACCTGA
TGATCTAGAGATCACCGAAAGATTACCTGACAAACCAGAGAAACCAGACA
AACCAGACAAACCAGAGAAACCAGAGAAACCAGACAAACCAGAGAAACCA
GAGAAACCAGTGAAGCAAAGATTCCAAGCTTTCCTTAGACCAACGACGCT
AAAAGCTAGGGTGTAAAAACCCTAGGGACAAAACTCACACACATATACGT
AACAAGAAAATGGTGAAAGAACTCTTTTCAAACGTATGTGAGCGGTTCCA
TTTATACGAGCGTTTACCGGCCGATGTGGAGACTGGGGACGAACAGGATG
GTGGAGAGTGTTCAGAGGATCAATCACGTGACAAAATCTCCTCCTCTAAT
GCTTTTTGGAATATCTGCAATTCCATTCAAGGTACAAACTAAAAGTTTGT
CGAAGAAATATTTTTATTTGAGCGAATCCGTCGAATCCTTAATTACTTTT
CAATTTCAATTCTTATTCGCTAAAATATATTTCCCTGCTGTGATATTCTG
ACTTCAATAAAAGGCCATTATAAATAATCCATTAATCATATTAAAAGTCA
GATTTTAATTTCGAAACCTCTCAAGCATATGGTTCTTTCATTTACCAAGG
TGTTGCCATCCTAGCGATGCCTTACGTCATCAAAGGCGGTGGGTGGTGGA
GTATCGTTGCCTTGGTGATCGTAGCAGCCATTTCGAATTACACTGGCCAA
ATCTTGATCAAGTGTCATTATGATGAGATGGAGAATGAGGAGGATGGATC
AACCACTATTGTCAGAACCAGGTAGTTTTGTACATCTTTGTTTTTTATAC
CAGAAGTGGCTAGATCTAACAACGGCTTTGCGCTTTGCTTAAAGTTAAGT
TTTAAAAATTGGACTCTTACAAAGAAACATGGCATACGTCGACCACTTGT
GTATTTTTTTAACCTTTCTGCCCATTACCAACCAATCTTACAATTTTAAA
GCCATTCTGGAGCTCGAATTTATTTTTTCCTTTACTTGAATCCTTTGAAA
TGTTTTAGACTGAGCACTTCGTTTAATTCGTTTATTTTGAATTTCTCAGG
ACCAGTTACGCAGAAGTTGGAGAAGCGATTTGGCCTCAATACGGTCGTCG
AATTATACTGCTTGTACAAGTGTTGGAATTATTGTTCATGGCAACCCTGT
ATCCAATCGTTTCTGTTTCCGTCCTACACATTCTTTTTCCCGTCAAAATT
TTTCCATCAGGAGTCTGGATCCTAGTCTTCGGATTGATCGTTTATCCGAA
CGTTTTTCTAAAGAAATTGTACCATATTTCGTTAATGAGTACGGTCACGG
TTGTTTCCGCTGCTTTTGTGACAGCGGTCATTATCATGTACTGTTTCACA
TCCGTTGCTACGTGGAAGGTCGGTCAGATGTCAATCATCTCTGCAAAGGA
GTTTATTTCAGCCATTGGTGTCATCATAGCCTCCTATTCTTCTCAAATGT
ATCTCTCCGTCATAGAGGCTAGTATGCGGGAACCACAAAAAGTTGGAACT
GTCATGAATCTAGGATACACTGCTATGACATTGTTGAAAATTGGGATAGG
CGTTGTGGCTTACATGACATTTGGCGACAGTACGTTGCAAGTGGTGGCCT
TAAATCTGCCACCTGGAGTCCTTCTAACTATGGTGAATATAGTAGTGCTG
TTCCTAGCCTTATCCTCCTATACCCTCCCTATGTTTACTGCTTTTGAGAT
TATCGAGAATGATTCCTCAATCACCGAAAGCACTGGAGATGTTGATAAAG
GAATGAAACGGCGCGTTTTGGTGCGCACTGGCCTCGTTTTGGTGACGCTT
CTGATGGCGATCAGTGTTCCACATTTCTGCTTGGTCTTATCATTCATTGG
CTGTTTCACCGGATGCTTCCTTGAAATCATTTTCCCATGTGCTTTTTACT
GTATCTTGAAATGGGACAAAATAAACACTTTCGAATTGGTTTTCAATATT
TTGTTGATCGTTGGTAGTCTTCTTTTCATGGGAATTGGAATGTATTTCTC
AGGATTGGCCATGGTACACGCGTTCAAATATAACACTAAAGAAGTATGGT
CTGTTGATTAGAAAGCTGGTTACTTGGATTTTTGAATTTCACTTGCAGGA
CCTTTCTGCTTGATAAAAATAGGTTTTCAAATAGTCAATTTGTACATTTG
GCCTGGCATGAAGGAAAAAAGAGTGGACTTGGTTGATTTTACACAAGATG
ATAAAGTATCTGGTATGATATATTTTTATGACATACCGGGTGTCTCTGAA
AAAACTTCCCCCTGTTTGATTCAAAATTGCGAAAAAGTGAAAAAATGTAT
TAGCTTGATTTTTTCGAAATCGTTTAGAGGAGGGTTTAACTTAAATTTTN
GGGACAGTACGTTGCAAGTGGTGGCCTTAAATCTGCCACCTGGAGTCCTT
CTAACTATGGTCAATATAGTAGTTCTGTTCCTAGCCTTATCCTCCTATAC
CCTCCCTATGTTTACTGCTTTTGAGATTCTCGAGAACGATTCCTCTATCA
CCGAAAGCACTGGAGATGTTGATAAAGGAATGAAACGGCGCGTTTTGGTG
CGCACTGGCCTCGTTTTGGTGACGCTTCTGATGGCGA

Coding sequence (CDS) from alignment at scaffold_231:188169..190855-

>TCONS_00053454 ID=TCONS_00053454|Name=TCONS_00053454|organism=Clytia hemisphaerica|type=CDS|length=4068bp|location=Sequence derived from alignment at scaffold_231:188169..190855- (Clytia hemisphaerica)
GACCAGTTACGCAGAAGTTGGAGAAGCGATTTGGCCTCAATACGGTCGTC
GAATTATACTGCTTGTACAAGTGTTGGAATTATTGTTCATGGCAACCCTG
TATCCAATCGTTTCTGTTTCCGTCCTACACATTCTTTTTCCCGTCAAAAT
TTTTCCATCAGGAGTCTGGATCCTAGTCTTCGGATTGATCGTTTATCCGA
ACGTTTTTCTAAAGAAATTGTACCATATTTCGTTAATGAGTACGGTCACG
GTTGTTTCCGCTGCTTTTGTGACAGCGGTCATTATCATGTACTGTTTCAC
ATCCGTTGCTACGTGGAAGGTCGGTCAGATGTCAATCATCTCTGCAAAGG
AGTTTATTTCAGCCATTGGTGTCATCATAGCCTCCTATTCTTCTCAAATG
TATCTCTCCGTCATAGAGGCTAGTATGCGGGAACCACAAAAAGTTGGAAC
TGTCATGAATCTAGGATACACTGCTATGACATTGTTGAAAATTGGGATAG
GCGTTGTGGCTTACATGACATTTGGCGACAGTACGTTGCAAGTGGTGGCC
TTAAATCTGCCACCTGGAGTCCTTCTAACTATGGTGAATATAGTAGTGCT
GTTCCTAGCCTTATCCTCCTATACCCTCCCTATGTTTACTGCTTTTGAGA
TTATCGAGAATGATTCCTCAATCACCGAAAGCACTGGAGATGTTGATAAA
GGAATGAAACGGCGCGTTTTGGTGCGCACTGGCCTCGTTTTGGTGACGCT
TCTGATGGCGATCAGTGTTCCACATTTCTGCTTGGTCTTATCATTCATTG
GCTGTTTCACCGGATGCTTCCTTGAAATCATTTTCCCATGTGCTTTTTAC
TGTATCTTGAAATGGGACAAAATAAACACTTTCGAATTGGTTTTCAATAT
TTTGTTGATCGTTGGTAGTCTTCTTTTCATGGGAATTGGAATGTATTTCT
CAGGATTGGCCATGGTACACGCGTTCAAATATAACACTAAAGAAGTATGG
TCTGTTGATTAGGTGTTGCCATCCTAGCGATGCCTTACGTCATCAAAGGC
GGTGGGTGGTGGAGTATCGTTGCCTTGGTGATCGTAGCAGCCATTTCGAA
TTACACTGGCCAAATCTTGATCAAGTGTCATTATGATGAGATGGAGAATG
AGGAGGATGGATCAACCACTATTGTCAGAACCAGATGGTGAAAGAACTCT
TTTCAAACGTATGTGAGCGGTTCCATTTATACGAGCGTTTACCGGCCGAT
GTGGAGACTGGGGACGAACAGGATGGTGGAGAGTGTTCAGAGGATCAATC
ACGTGACAAAATCTCCTCCTCTAATGCTTTTTGGAATATCTGCAATTCCA
TTCAAGGACCAGTTACGCAGAAGTTGGAGAAGCGATTTGGCCTCAATACG
GTCGTCGAATTATACTGCTTGTACAAGTGTTGGAATTATTGTTCATGGCA
ACCCTGTATCCAATCGTTTCTGTTTCCGTCCTACACATTCTTTTTCCCGT
CAAAATTTTTCCATCAGGAGTCTGGATCCTAGTCTTCGGATTGATCGTTT
ATCCGAACGTTTTTCTAAAGAAATTGTACCATATTTCGTTAATGAGTACG
GTCACGGTTGTTTCCGCTGCTTTTGTGACAGCGGTCATTATCATGTACTG
TTTCACATCCGTTGCTACGTGGAAGGTCGGTCAGATGTCAATCATCTCTG
CAAAGGAGTTTATTTCAGCCATTGGTGTCATCATAGCCTCCTATTCTTCT
CAAATGTATCTCTCCGTCATAGAGGCTAGTATGCGGGAACCACAAAAAGT
TGGAACTGTCATGAATCTAGGATACACTGCTATGACATTGTTGAAAATTG
GGATAGGCGTTGTGGCTTACATGACATTTGGCGACAGTACGTTGCAAGTG
GTGGCCTTAAATCTGCCACCTGGAGTCCTTCTAACTATGGTGAATATAGT
AGTGCTGTTCCTAGCCTTATCCTCCTATACCCTCCCTATGTTTACTGCTT
TTGAGATTATCGAGAATGATTCCTCAATCACCGAAAGCACTGGAGATGTT
GATAAAGGAATGAAACGGCGCGTTTTGGTGCGCACTGGCCTCGTTTTGGT
GACGCTTCTGATGGCGATCAGTGTTCCACATTTCTGCTTGGTCTTATCAT
TCATTGGCTGTTTCACCGGATGCTTCCTTGAAATCATTTTCCCATGTGCT
TTTTACTGTATCTTGAAATGGGACAAAATAAACACTTTCGAATTGGTTTT
CAATATTTTGTTGATCGTTGGTAGTCTTCTTTTCATGGGAATTGGAATGT
ATTTCTCAGGATTGGCCATGGTACACGCGTTCAAATATAACACTAAAGAA
GTATGGTCTGTTGATTAGGTGTTGCCATCCTAGCGATGCCTTACGTCATC
AAAGGCGGTGGGTGGTGGAGTATCGTTGCCTTGGTGATCGTAGCAGCCAT
TTCGAATTACACTGGCCAAATCTTGATCAAGTGTCATTATGATGAGATGG
AGAATGAGGAGGATGGATCAACCACTATTGTCAGAACCAGATGGTGAAAG
AACTCTTTTCAAACGTATGTGAGCGGTTCCATTTATACGAGCGTTTACCG
GCCGATGTGGAGACTGGGGACGAACAGGATGGTGGAGAGTGTTCAGAGGA
TCAATCACGTGACAAAATCTCCTCCTCTAATGCTTTTTGGAATATCTGCA
ATTCCATTCAAGGACCAGTTACGCAGAAGTTGGAGAAGCGATTTGGCCTC
AATACGGTCGTCGAATTATACTGCTTGTACAAGTGTTGGAATTATTGTTC
ATGGCAACCCTGTATCCAATCGTTTCTGTTTCCGTCCTACACATTCTTTT
TCCCGTCAAAATTTTTCCATCAGGAGTCTGGATCCTAGTCTTCGGATTGA
TCGTTTATCCGAACGTTTTTCTAAAGAAATTGTACCATATTTCGTTAATG
AGTACGGTCACGGTTGTTTCCGCTGCTTTTGTGACAGCGGTCATTATCAT
GTACTGTTTCACATCCGTTGCTACGTGGAAGGTCGGTCAGATGTCAATCA
TCTCTGCAAAGGAGTTTATTTCAGCCATTGGTGTCATCATAGCCTCCTAT
TCTTCTCAAATGTATCTCTCCGTCATAGAGGCTAGTATGCGGGAACCACA
AAAAGTTGGAACTGTCATGAATCTAGGATACACTGCTATGACATTGTTGA
AAATTGGGATAGGCGTTGTGGCTTACATGACATTTGGCGACAGTACGTTG
CAAGTGGTGGCCTTAAATCTGCCACCTGGAGTCCTTCTAACTATGGTGAA
TATAGTAGTGCTGTTCCTAGCCTTATCCTCCTATACCCTCCCTATGTTTA
CTGCTTTTGAGATTATCGAGAATGATTCCTCAATCACCGAAAGCACTGGA
GATGTTGATAAAGGAATGAAACGGCGCGTTTTGGTGCGCACTGGCCTCGT
TTTGGTGACGCTTCTGATGGCGATCAGTGTTCCACATTTCTGCTTGGTCT
TATCATTCATTGGCTGTTTCACCGGATGCTTCCTTGAAATCATTTTCCCA
TGTGCTTTTTACTGTATCTTGAAATGGGACAAAATAAACACTTTCGAATT
GGTTTTCAATATTTTGTTGATCGTTGGTAGTCTTCTTTTCATGGGAATTG
GAATGTATTTCTCAGGATTGGCCATGGTACACGCGTTCAAATATAACACT
AAAGAAGTATGGTCTGTTGATTAGGTGTTGCCATCCTAGCGATGCCTTAC
GTCATCAAAGGCGGTGGGTGGTGGAGTATCGTTGCCTTGGTGATCGTAGC
AGCCATTTCGAATTACACTGGCCAAATCTTGATCAAGTGTCATTATGATG
AGATGGAGAATGAGGAGGATGGATCAACCACTATTGTCAGAACCAGATGG
TGAAAGAACTCTTTTCAAACGTATGTGAGCGGTTCCATTTATACGAGCGT
TTACCGGCCGATGTGGAGACTGGGGACGAACAGGATGGTGGAGAGTGTTC
AGAGGATCAATCACGTGACAAAATCTCCTCCTCTAATGCTTTTTGGAATA
TCTGCAATTCCATTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033747XLOC_033747Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053454-proteinTCONS_00053454-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053454-exon-scaffold_231-1575043694:190375..190855TCONS_00053454-exon-scaffold_231-1575043694:190375..190855Clytia hemisphaericaexon
TCONS_00053454-exon-scaffold_231-1575043694:189985..190156TCONS_00053454-exon-scaffold_231-1575043694:189985..190156Clytia hemisphaericaexon
TCONS_00053454-exon-scaffold_231-1575043694:188169..189706TCONS_00053454-exon-scaffold_231-1575043694:188169..189706Clytia hemisphaericaexon
TCONS_00053454-exon-scaffold_231-1510915933:190375..190855TCONS_00053454-exon-scaffold_231-1510915933:190375..190855Clytia hemisphaericaexon
TCONS_00053454-exon-scaffold_231-1510915933:189985..190156TCONS_00053454-exon-scaffold_231-1510915933:189985..190156Clytia hemisphaericaexon
TCONS_00053454-exon-scaffold_231-1510915933:188169..189706TCONS_00053454-exon-scaffold_231-1510915933:188169..189706Clytia hemisphaericaexon
TCONS_00053454-exon-scaffold_231-1491911889:190375..190855TCONS_00053454-exon-scaffold_231-1491911889:190375..190855Clytia hemisphaericaexon
TCONS_00053454-exon-scaffold_231-1491911889:189985..190156TCONS_00053454-exon-scaffold_231-1491911889:189985..190156Clytia hemisphaericaexon
TCONS_00053454-exon-scaffold_231-1491911889:188169..189706TCONS_00053454-exon-scaffold_231-1491911889:188169..189706Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_231supercontigscaffold_231:188169..190855 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0566131	0.105601	0.245731	0.331781	0.109853	1.55372	1.90027	2.33544	2.85304	1.37943	1.30941	0.817017	0.747998	0.0514285	0.0559269	0.402212	0.519552	1.4321	1.3759	0.673616	1.06489	0.495671	0.738242	0.8724	0.625134	0.381204	0.37263	0.0217171	0.042945
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013057AA_transpt_TM
Blast
[Close]
BLAST of TCONS_00053454 vs. Swiss-Prot (Human)
Match: VIAAT (Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=2 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 5.790e-50
Identity = 131/421 (31.12%), Postives = 224/421 (53.21%), Query Frame = 1 
Query:  421 QSRDKISSSNAFWNICNSIQGVAILAMPYVIKGGGWWSIVALVIVAAISNYTGQILIKCHYDEMENEEDGSTTIVRTRTSYAEVGEAI----WPQYGRRIILLVQVLELLFMATLYPIVSVSVLHILFPVKIFPSGVWILVFGLIVYPNVFLKKLYHISLMXXXXXXXXXXXXXXIIMYCFTSVATWKVGQMSI-ISAKEFISAIGVIIASYSSQMYLSVIEASMREPQKVGTVMNLGYTAMTLLKIGIGVVAYMTFGDSTLQVVALNLPPGVLLTMVNIVVLFLALSSYTLPMFTAFEIIEN------DSSITESTGDVDKGMKX-XXXXXXXXXXXXXXMAISVPHFCLVLSFIGCFTGCFLEIIFPCAFYCILKWDKINTFELVFNILLIVGSLLFMGIGMYFSGLAMVHAFKYNTKE 1647
              + KI++  A WN+ N+IQG+ +L +PY I  GG+  +  ++  A +  YTG+ILI C Y+E E+ E     +VR R SY  +  A     +P  G R++ + Q++EL+    LY +VS ++++  FP        W ++   ++ P  FLK L  +S  S +  ++   +  ++I YC +    W   ++   I  K+F  +IG+I+ SY+SQ++L  +E +M++P +   +MN  + A  +LK    +VAY+T+ D T +V+  NL PG +  +VNI ++  AL SY LP F A E++E         +   +    D  +K   + +R  LV+ TLLMAI VPHF L++   G  TG  L  + P  F+  L W K+   ++ F++ + V   +    G   S   ++ A++ N ++
Sbjct:  111 HDKPKITAWEAGWNVTNAIQGMFVLGLPYAILHGGYLGLFLIIFAAVVCCYTGKILIACLYEENEDGE-----VVRVRDSYVAIANACCAPRFPTLGGRVVNVAQIIELVMTCILYVVVSGNLMYNSFPGLPVSQKSWSIIATAVLLPCAFLKNLKAVSKFSLLCTLAHFVINILVIAYCLSRARDWAWEKVKFYIDVKKFPISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVLKGLFALVAYLTWADETKEVITDNL-PGSIRAVVNIFLVAKALLSYPLPFFAAVEVLEKSLFQEGSRAFFPACYSGDGRLKSWGLTLRCALVVFTLLMAIYVPHFALLMGLTGSLTGAGLCFLLPSLFHLRLLWRKLLWHQVFFDVAIFVIGGICSVSGFVHSLEGLIEAYRTNAED 525
The following BLAST results are available for this feature:
BLAST of TCONS_00053454 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VIAAT5.790e-5031.12Vesicular inhibitory amino acid transporter OS=Hom... [more]
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