TCONS_00053454-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00053454-protein
Unique Name	TCONS_00053454-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	451

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00053454-protein ID=TCONS_00053454-protein|Name=TCONS_00053454-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp
MVKELFSNVCERFHLYERLPADVETGDEQDGGECSEDQSRDKISSSNAFW
NICNSIQGVAILAMPYVIKGGGWWSIVALVIVAAISNYTGQILIKCHYDE
MENEEDGSTTIVRTRTSYAEVGEAIWPQYGRRIILLVQVLELLFMATLYP
IVSVSVLHILFPVKIFPSGVWILVFGLIVYPNVFLKKLYHISLMSTVTVV
SAAFVTAVIIMYCFTSVATWKVGQMSIISAKEFISAIGVIIASYSSQMYL
SVIEASMREPQKVGTVMNLGYTAMTLLKIGIGVVAYMTFGDSTLQVVALN
LPPGVLLTMVNIVVLFLALSSYTLPMFTAFEIIENDSSITESTGDVDKGM
KRRVLVRTGLVLVTLLMAISVPHFCLVLSFIGCFTGCFLEIIFPCAFYCI
LKWDKINTFELVFNILLIVGSLLFMGIGMYFSGLAMVHAFKYNTKEVWSV
D

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033747	XLOC_033747	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00053454	TCONS_00053454	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013057	AA_transpt_TM

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013057	Amino acid transporter, transmembrane domain	PFAM	PF01490	Aa_trans	coord: 42..431 e-value: 2.2E-63 score: 214.3

Blast

[Close]

BLAST of TCONS_00053454-protein vs. Swiss-Prot (Human)
Match: VIAAT (Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 6.134e-60
Identity = 132/421 (31.35%), Postives = 224/421 (53.21%), Query Frame = 0

Query:   38 QSRDKISSSNAFWNICNSIQGVAILAMPYVIKGGGWWSIVALVIVAAISNYTGQILIKCHYDEMENEEDGSTTIVRTRTSYAEVGEAI----WPQYGRRIILLVQVLELLFMATLYPIVSVSVLHILFPVKIFPSGVWILVFGLIVYPNVFLKKLYHISLMSTVTVVSAAFVTAVIIMYCFTSVATWKVGQMSI-ISAKEFISAIGVIIASYSSQMYLSVIEASMREPQKVGTVMNLGYTAMTLLKIGIGVVAYMTFGDSTLQVVALNLPPGVLLTMVNIVVLFLALSSYTLPMFTAFEIIEN------DSSITESTGDVDKGMKRRVL-VRTGLVLVTLLMAISVPHFCLVLSFIGCFTGCFLEIIFPCAFYCILKWDKINTFELVFNILLIVGSLLFMGIGMYFSGLAMVHAFKYNTKE 446
              + KI++  A WN+ N+IQG+ +L +PY I  GG+  +  ++  A +  YTG+ILI C Y+E E+ E     +VR R SY  +  A     +P  G R++ + Q++EL+    LY +VS ++++  FP        W ++   ++ P  FLK L  +S  S +  ++   +  ++I YC +    W   ++   I  K+F  +IG+I+ SY+SQ++L  +E +M++P +   +MN  + A  +LK    +VAY+T+ D T +V+  NL PG +  +VNI ++  AL SY LP F A E++E         +   +    D  +K   L +R  LV+ TLLMAI VPHF L++   G  TG  L  + P  F+  L W K+   ++ F++ + V   +    G   S   ++ A++ N ++
Sbjct:  111 HDKPKITAWEAGWNVTNAIQGMFVLGLPYAILHGGYLGLFLIIFAAVVCCYTGKILIACLYEENEDGE-----VVRVRDSYVAIANACCAPRFPTLGGRVVNVAQIIELVMTCILYVVVSGNLMYNSFPGLPVSQKSWSIIATAVLLPCAFLKNLKAVSKFSLLCTLAHFVINILVIAYCLSRARDWAWEKVKFYIDVKKFPISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVLKGLFALVAYLTWADETKEVITDNL-PGSIRAVVNIFLVAKALLSYPLPFFAAVEVLEKSLFQEGSRAFFPACYSGDGRLKSWGLTLRCALVVFTLLMAIYVPHFALLMGLTGSLTGAGLCFLLPSLFHLRLLWRKLLWHQVFFDVAIFVIGGICSVSGFVHSLEGLIEAYRTNAED 525

The following BLAST results are available for this feature:

BLAST of TCONS_00053454-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00053454-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VIAAT	6.134e-60	31.35	Vesicular inhibitory amino acid transporter OS=Hom...	[more]

You are here

TCONS_00053454-protein (polypeptide) - C. hemisphaerica