TCONS_00053298 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053298
Unique NameTCONS_00053298
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053298 ID=TCONS_00053298|Name=TCONS_00053298|organism=Clytia hemisphaerica|type=transcript|length=339bp
GTTTTTATTGGCAAAAGACGAAGAAACGATTGCCAAAATAAGTCAGGTTT
TAGTTGACAATGATATCAAACATAAATTATGGACTGAACAACCAGAAAAT
TACCCAACATGCCTTGCATTAAAACCTTACCCTAAAGACGACGTTCATAA
ATATCTGAAAAAACTGAAGCTTTTTAAATAGAACTTTGATGTAATTTTag
gagattttttaaaaataattatttaataagaacaatatgcattttttatt
atttcaaagaatattttttacATTCTTTCTGGGAAGGGTAATTTGCATCT
GAAAATACTttcatttacacgtttttttttataTGAACG
Run BLAST on NCBI

transcript from alignment at scaffold_228:405587..406543+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053298 ID=TCONS_00053298|Name=TCONS_00053298|organism=Clytia hemisphaerica|type=transcript|length=957bp|location=Sequence derived from alignment at scaffold_228:405587..406543+ (Clytia hemisphaerica)
GTTTTTATTGGTTACTTTTATTAACTTCCATGAACTTTTCATAtgagaat
acatgttttttataagaacaaactatataagaatataaggcttcagtggc
caaaatcttaagaataaattaagaacattttaaggctttgtgggctctaa
aacacctgttttcttaggaaaatggacaaaatactcaaaaaatggcgaaa
ataagaacatgttaagaactttTTTTGGGTTGAAACCtgaaaagttgaga
acatctgaaggcttaaaaaaatgatggatgttcttataaaaaaacgtgtg
ttcATTGTGAGCAATACTTCCAATGCAATAATGTTACAAAGGGGATAATG
CAGTGGCTAATTTGTTCAGGAATAGTTTTTCAATTGTGACTTCTCAATTT
TGATATCAACTGCATTGGCAAAGTTTTCGAATCTTGTGTTCACTTGACCC
TATTGGGATTAGTTTGTAAACAATATCAACGTCTATGAAAATTTCATGAA
gagattttttcaaacattaatCCAAAGTTGGAAAACTTATATGTAAgcag
tgtaatgaatttaagtaGGTTTTATGATTTAAAAGTATATCCAAATGggt
ctatttatttattttcttcttaTTTCAGGCAAAAGACGAAGAAACGATTG
CCAAAATAAGTCAGGTTTTAGTTGACAATGATATCAAACATAAATTATGG
ACTGAACAACCAGAAAATTACCCAACATGCCTTGCATTAAAACCTTACCC
TAAAGACGACGTTCATAAATATCTGAAAAAACTGAAGCTTTTTAAATAGA
ACTTTGATGTAATTTTaggagattttttaaaaataattatttaataagaa
caatatgcattttttattatttcaaagaatattttttacATTCTTTCTGG
GAAGGGTAATTTGCATCTGAAAATACTttcatttacacgtttttttttat
aTGAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033641XLOC_033641Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053298-exon-scaffold_228-1491911889:405587..405596TCONS_00053298-exon-scaffold_228-1491911889:405587..405596Clytia hemisphaericaexon
TCONS_00053298-exon-scaffold_228-1510915933:405587..405596TCONS_00053298-exon-scaffold_228-1510915933:405587..405596Clytia hemisphaericaexon
TCONS_00053298-exon-scaffold_228-1575043694:405587..405596TCONS_00053298-exon-scaffold_228-1575043694:405587..405596Clytia hemisphaericaexon
TCONS_00053298-exon-scaffold_228-1491911889:406215..406543TCONS_00053298-exon-scaffold_228-1491911889:406215..406543Clytia hemisphaericaexon
TCONS_00053298-exon-scaffold_228-1510915933:406215..406543TCONS_00053298-exon-scaffold_228-1510915933:406215..406543Clytia hemisphaericaexon
TCONS_00053298-exon-scaffold_228-1575043694:406215..406543TCONS_00053298-exon-scaffold_228-1575043694:406215..406543Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:405587..406543 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.50114	0.470645	0.43572	1.99079	0	0	0	0	0	0	0	0	0	0	0	0.257489	0	0	2.28503	0	0	0	0.493866	0	0	0	0	0.664681	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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