TCONS_00053297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053297
Unique NameTCONS_00053297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053297 ID=TCONS_00053297|Name=TCONS_00053297|organism=Clytia hemisphaerica|type=transcript|length=558bp
tcctaggtagaaaaattgaaaagagaaaatGAGTACTGCTCAAGCATTAA
AATTGGTTCAGTATGTTGTTATCAGAAGAGATTTATTAGATATCATGAAA
TGGCCTGTTGGTGCTGTCATTGCACAAGCTTGTCATGCATGTACTGCTGT
TATTCACTTGAACTATGGGGATGATCATACACAAGAATATTTAAAAGATC
TAGATAATATGCATAAAGTTGTACTAGAGGCAAAAGACGAAGAAACGATT
GCCAAAATAAGTCAGGTTTTAGTTGACAATGATATCAAACATAAATTATG
GACTGAACAACCAGAAAATTACCCAACATGCCTTGCATTAAAACCTTACC
CTAAAGACGACGTTCATAAATATCTGAAAAAACTGAAGCTTTTTAAATAG
AACTTTGATGTAATTTTaggagattttttaaaaataattatttaataaga
acaatatgcattttttattatttcaaagaatattttttacATTCTTTCTG
GGAAGGGTAATTTGCATCTGAAAATACTttcatttacacgttttttttta
taTGAACG
Run BLAST on NCBI

protein sequence of TCONS_00053297-protein

>TCONS_00053297-protein ID=TCONS_00053297-protein|Name=TCONS_00053297-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MSTAQALKLVQYVVIRRDLLDIMKWPVGAVIAQACHACTAVIHLNYGDDH
TQEYLKDLDNMHKVVLEAKDEETIAKISQVLVDNDIKHKLWTEQPENYPT
CLALKPYPKDDVHKYLKKLKLFK
Run BLAST on NCBI

transcript from alignment at scaffold_228:405358..406543+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053297 ID=TCONS_00053297|Name=TCONS_00053297|organism=Clytia hemisphaerica|type=transcript|length=1186bp|location=Sequence derived from alignment at scaffold_228:405358..406543+ (Clytia hemisphaerica)
tcctaggtagaaaaattgaaaagagaaaatGAGTACTGCTCAAGCATTAA
AATTGGTTCAGTATGTTGTTATCAGAAGAGATTTATTAGATATCATGAAA
TGGCCTGTTGGTGCTGTCATTGCACAAGCTTGTCATGCATGTACTGCTGT
TATTCACTTGAACTATGGGGATGATCATACACAAGAATATTTAAAAGATC
TAGATAATATGCATAAAGTTGTACTAGAGGTTTTTATTGGTTACTTTTAT
TAACTTCCATGAACTTTTCATAtgagaatacatgttttttataagaacaa
actatataagaatataaggcttcagtggccaaaatcttaagaataaatta
agaacattttaaggctttgtgggctctaaaacacctgttttcttaggaaa
atggacaaaatactcaaaaaatggcgaaaataagaacatgttaagaactt
tTTTTGGGTTGAAACCtgaaaagttgagaacatctgaaggcttaaaaaaa
tgatggatgttcttataaaaaaacgtgtgttcATTGTGAGCAATACTTCC
AATGCAATAATGTTACAAAGGGGATAATGCAGTGGCTAATTTGTTCAGGA
ATAGTTTTTCAATTGTGACTTCTCAATTTTGATATCAACTGCATTGGCAA
AGTTTTCGAATCTTGTGTTCACTTGACCCTATTGGGATTAGTTTGTAAAC
AATATCAACGTCTATGAAAATTTCATGAAgagattttttcaaacattaat
CCAAAGTTGGAAAACTTATATGTAAgcagtgtaatgaatttaagtaGGTT
TTATGATTTAAAAGTATATCCAAATGggtctatttatttattttcttctt
aTTTCAGGCAAAAGACGAAGAAACGATTGCCAAAATAAGTCAGGTTTTAG
TTGACAATGATATCAAACATAAATTATGGACTGAACAACCAGAAAATTAC
CCAACATGCCTTGCATTAAAACCTTACCCTAAAGACGACGTTCATAAATA
TCTGAAAAAACTGAAGCTTTTTAAATAGAACTTTGATGTAATTTTaggag
attttttaaaaataattatttaataagaacaatatgcattttttattatt
tcaaagaatattttttacATTCTTTCTGGGAAGGGTAATTTGCATCTGAA
AATACTttcatttacacgtttttttttataTGAACG

Coding sequence (CDS) from alignment at scaffold_228:405358..406543+

>TCONS_00053297 ID=TCONS_00053297|Name=TCONS_00053297|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_228:405358..406543+ (Clytia hemisphaerica)
atGAGTACTGCTCAAGCATTAAAATTGGTTCAGTATGTTGTTATCAGAAG
AGATTTATTAGATATCATGAAATGGCCTGTTGGTGCTGTCATTGCACAAG
CTTGTCATGCATGTACTGCTGTTATTCACTTGAACTATGGGGATGATCAT
ACACAAGAATATTTAAAAGATCTAGATAATATGCATAAAGTTGTACTAGA
GGCAAAAGACGAAGAAACGATTGCCAAAATAAGTCAGGTTTTAGTTGACA
ATGATATCAAACATAAATTATGGACTGAACAACCAGAAAATTACCCAACA
TGCCTTGCATTAAAACCTTACCCTAAAGACGACGTTCATAAATATCTGAA
AAAACTGAAGCTTTTTAAATAGatGAGTACTGCTCAAGCATTAAAATTGG
TTCAGTATGTTGTTATCAGAAGAGATTTATTAGATATCATGAAATGGCCT
GTTGGTGCTGTCATTGCACAAGCTTGTCATGCATGTACTGCTGTTATTCA
CTTGAACTATGGGGATGATCATACACAAGAATATTTAAAAGATCTAGATA
ATATGCATAAAGTTGTACTAGAGGCAAAAGACGAAGAAACGATTGCCAAA
ATAAGTCAGGTTTTAGTTGACAATGATATCAAACATAAATTATGGACTGA
ACAACCAGAAAATTACCCAACATGCCTTGCATTAAAACCTTACCCTAAAG
ACGACGTTCATAAATATCTGAAAAAACTGAAGCTTTTTAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033641XLOC_033641Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053297-proteinTCONS_00053297-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053297-exon-scaffold_228-1491911889:405358..405586TCONS_00053297-exon-scaffold_228-1491911889:405358..405586Clytia hemisphaericaexon
TCONS_00053297-exon-scaffold_228-1510915933:405358..405586TCONS_00053297-exon-scaffold_228-1510915933:405358..405586Clytia hemisphaericaexon
TCONS_00053297-exon-scaffold_228-1575043694:405358..405586TCONS_00053297-exon-scaffold_228-1575043694:405358..405586Clytia hemisphaericaexon
TCONS_00053297-exon-scaffold_228-1491911889:406215..406543TCONS_00053297-exon-scaffold_228-1491911889:406215..406543Clytia hemisphaericaexon
TCONS_00053297-exon-scaffold_228-1510915933:406215..406543TCONS_00053297-exon-scaffold_228-1510915933:406215..406543Clytia hemisphaericaexon
TCONS_00053297-exon-scaffold_228-1575043694:406215..406543TCONS_00053297-exon-scaffold_228-1575043694:406215..406543Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:405358..406543 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
44.4401	44.2349	33.5618	40.3599	18.3698	17.3326	16.0754	15.7837	16.7043	16.4467	8.13625	9.13976	5.81427	6.88072	8.88939	9.13403	14.8046	12.593	2.06651	3.05313	7.76461	5.46523	43.0584	31.578	7.53086	7.30556	10.3148	7.3392	20.3093	18.048
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023476Pep_tRNA_hydro_II_dom
IPR002833PTH2
Vocabulary: Molecular Function
TermDefinition
GO:0004045aminoacyl-tRNA hydrolase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004045 aminoacyl-tRNA hydrolase activity
Blast
[Close]
BLAST of TCONS_00053297 vs. Swiss-Prot (Human)
Match: PTRD1 (Putative peptidyl-tRNA hydrolase PTRHD1 OS=Homo sapiens GN=PTRHD1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.261e-27
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 2 
Query:   32 STAQALKLVQYVVIRRDLLDI-MKWPVGAVIAQACHACTAVIHLNYGDDHTQEYLKDLDNMHKVVLEAKDEETIAKISQVLVDNDIKHKLWTEQPENYPTCLALKPYPKDDV 364
            S A+   LVQY+V+R+DL      WP GA++AQACHA TA +H +    HT  YL++L  M KVVLEA DE T+ ++++ L   +I H LW EQPEN  TC+AL+PYPK++V
Sbjct:   18 SGAEPQVLVQYLVLRKDLSQAPFSWPAGALVAQACHAATAALHTHRDHPHTAAYLQELGRMRKVVLEAPDETTLKELAETLQQKNIDHMLWLEQPENIATCIALRPYPKEEV 129
The following BLAST results are available for this feature:
BLAST of TCONS_00053297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTRD16.261e-2750.89Putative peptidyl-tRNA hydrolase PTRHD1 OS=Homo sa... [more]
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