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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053282 ID=TCONS_00053282|Name=TCONS_00053282|organism=Clytia hemisphaerica|type=transcript|length=1368bpRun BLAST on NCBI transcript from alignment at scaffold_228:258791..272858+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053282 ID=TCONS_00053282|Name=TCONS_00053282|organism=Clytia hemisphaerica|type=transcript|length=14068bp|location=Sequence derived from alignment at scaffold_228:258791..272858+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00053282 vs. Swiss-Prot (Human)
Match: MEGF6 (Multiple epidermal growth factor-like domains protein 6 OS=Homo sapiens GN=MEGF6 PE=1 SV=4) HSP 1 Score: 135.191 bits (339), Expect = 2.027e-33 Identity = 106/351 (30.20%), Postives = 148/351 (42.17%), Query Frame = 1
Query: 214 CGLFCWKKCQKSRQVQKTYLKSVKERKLRTIHECCDGWAPH-------NGECTIPLCKPACQHGTCMKPNI--CSCQKGYKGKQCSTEIDECQTTSGAKPVCDQICKNLPGSYMCSCKKGYQKINPRDPLHP---TCINVNECSISQSLCQ---------------------------------CSNPSSSCVATCHDSIGSYHCTCSKGYKLSGK-HLCVDQNECSTNTHGCQHYCYNNHGKYSCGCKNGYTLNPLDGKTCLDID-----ECKYANGGCEQICHNKPGAYSCQCRKGFKLDADKRSCIDEDECSTFKPCDPTLGSCHNTRGSYSCSCKPGYQLDVKGVLC 1113
CG W + R V + V + RT+ CC GW + EC+ LC G C+ + C C G++G +C ++DEC+T +G C C N PGSY+C CK G++ LH TC+ +N C++ CQ C+N + SC+ C G C C GY+L+ C D +EC+ C H C N G + C C GY L DG+ C I+ C+ NGGC C + C C +G++LD D+R+CID D+C+ C C N G Y C C GY+L G C
Sbjct: 77 CGWQAWCVGHERRTVYYMGYRQVYTTEARTVLRCCRGWMQQPDEEGCLSAECSASLCF---HGGRCVPGSAQPCHCPPGFQGPRCQYDVDECRTHNGG---CQHRCVNTPGSYLCECKPGFR-------LHTDSRTCLAINSCALGNGGCQHHCVQLTITRHRCQCRPGFQLQEDGRHCVRRSPCANRNGSCMHRCQVVRGLARCECHVGYQLAADGKACEDVDECAAGLAQCAHGCLNTQGSFKCVCHAGYELG-ADGRQCYRIEMEIVNSCEANNGGCSHGCSHTSAGPLCTCPRGYELDTDQRTCIDVDDCADSPCCQQV---CTNNPGGYECGCYAGYRLSADGCGC 410 HSP 2 Score: 92.8189 bits (229), Expect = 9.059e-20 Identity = 73/204 (35.78%), Postives = 100/204 (49.02%), Query Frame = 1
Query: 406 CSCQKGYK----GKQCSTEIDECQTTSGAKPVCDQICKNLPGSYMCSCKKGYQ-KINPRDPLHPTCINVNECSISQSLCQCSNPSSSCVATCHDSIGSYHCTCSKGYKL-SGKHLCVDQNECSTNTHGCQHYCYNNHGKYSCGCKNGYTLNPLDGKTCLDIDECKYANGGCEQICHNKPGAYSCQCRKGFKLDADKRSCIDEDE 999
C C GY+ GK C ++DEC + C C N GS+ C C GY+ + R VN C + C S C H S G CTC +GY+L + + C+D ++C+ ++ CQ C NN G Y CGC GY L+ DG C D+DEC + GGCE C N G++ C C G++L D+R C +E
Sbjct: 268 CECHVGYQLAADGKACE-DVDEC---AAGLAQCAHGCLNTQGSFKCVCHAGYELGADGRQCYRIEMEIVNSCEANNGGC-----SHGCS---HTSAGPL-CTCPRGYELDTDQRTCIDVDDCA-DSPCCQQVCTNNPGGYECGCYAGYRLS-ADGCGCEDVDECASSRGGCEHHCTNLAGSFQCSCEAGYRLHEDRRGCSPLEE 456 The following BLAST results are available for this feature:
BLAST of TCONS_00053282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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