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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053215 ID=TCONS_00053215|Name=TCONS_00053215|organism=Clytia hemisphaerica|type=transcript|length=3595bpRun BLAST on NCBI protein sequence of TCONS_00053215-protein >TCONS_00053215-protein ID=TCONS_00053215-protein|Name=TCONS_00053215-protein|organism=Clytia hemisphaerica|type=polypeptide|length=829bp MLRAGLLGKQRASLLTKSSRFLSNKTLPTSAEVVITGGGVIGTSIAYHLTRun BLAST on NCBI transcript from alignment at scaffold_227:310253..325094+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053215 ID=TCONS_00053215|Name=TCONS_00053215|organism=Clytia hemisphaerica|type=transcript|length=14842bp|location=Sequence derived from alignment at scaffold_227:310253..325094+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_227:310253..325094+ >TCONS_00053215 ID=TCONS_00053215|Name=TCONS_00053215|organism=Clytia hemisphaerica|type=CDS|length=42330bp|location=Sequence derived from alignment at scaffold_227:310253..325094+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053215 vs. Swiss-Prot (Human)
Match: PDPR (Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial OS=Homo sapiens GN=PDPR PE=1 SV=2) HSP 1 Score: 371.318 bits (952), Expect = 7.663e-111 Identity = 257/843 (30.49%), Postives = 436/843 (51.72%), Query Frame = 3
Query: 207 LLGKQRASLLTKSSRFLSNKT---------LPTSAEXXXXXXXXXXXSIAYHLTQLGWKDIVILEQGSLGCGTSWHAAGLVKSIHSNHENTQQSKYAFELFDKFEQDFGI--GFKKCGSLILAQHEDRALSLRKSYQMGRENGVDCHLISAQEAQQLNPLISTEGVKLAMMVPGDSVVNPTDLIQAYTKGAVKNGATKVFEGVQVLNLNSSERRLITSVDTDQGNIECGHFINAAGLWSRELGLKSQPPVQLPLHACQHFYIVTKPYN--VDPMMPVTRDHDGHLYFREWSGGLMAGGFEPDAMSCFYEGIPGKFEFQLLEEDWDHFDYMLGGILKRFPSIANAEIRNFINGPESFSPDGRPHLSFAKEFDNYIALCGLSSNGIVGSPGYGKMAAELLTFGQSEHWNPYHYSVHRM-AHGSNNKFLNEKVAPAILTTRYEFVYPETTYKAFPRNVLTSPIHESLEKSGAVWNQENNWEIPKYF-----DDCGDVRENTLGKPNWLPNVQREMKACEDSVGLIDLSSQSVFELQF--DSSVSIGEFFEHFDID-PSAMAVHGKETPIFDEKDECIALVSISNTQNKRLYLRSNANVHSFLLSSLEQYA-ETNDVIVRDVTGSYAVFRLVGPNVDALLDKLISPPYSTEDLYKTSSMVMDIGYACDVIVMS-SSIGE-GWDLMIPVQFSQGLYRLLMEHGQDYGMTNVGHIAMESLRVQTKIP---------KVPNEVGLRTEKQFVK--------SIFSDKETGPVHQKSLH-TIKIQVVETNWPWGGETLLHSQTREKVGSISSLGYTSDSNILKALSVVDQSKCEDGDDVIVCVGTDEYVGR 2606
++G+QRAS ++ N T LPT A+VVI GGG+ GTS+AYHL+++GWKDIV+LEQG L G++ AG++ + + + Y+ +L+ + EQ+ GI G+ + GS+ LAQ +DR +SL++ G+ +IS ++ +L+ L++ + AM VP D+VV+ D+ A A +NG ++++ VL++ + + +T V+TD+G IEC +F+N AG W+ ELGL ++ PV +PLHAC+HFY++T+P + P D DG +Y R W GG+++GGFE + F EG + E Q L+EDWDHF+ +L +L+R P + EI +N PE+F+PD R + + Y L G++S G+ G GK AE + G N + + R A S+ FL +V ++ Y+ P ++ R + TSP+++ L+ GA W +++ +E PKYF D + T KP+W V+ E+K C+++V +ID+SS + FE+ D ++ + ++ D+D P VH T + +E SI+ + ++ S + + L+++ + +++++ DVT Y L+GP +L +L P + + M +GYA + VMS + GE G+ L IP++++ +Y +M GQ YG+ N G+ A+ SLR++ P E G + + K ++ K+ G + ++ WPW GE + + + VG +S Y+ L V + G++ +V T +++ R
Sbjct: 9 IVGRQRASPGWQNWSSARNSTSAAEARSMALPTQAQVVICGGGITGTSVAYHLSKMGWKDIVLLEQGRLAAGSTRFCAGILSTARHLTIEQKMADYSNKLYYQLEQETGIQTGYTRTGSIFLAQTQDRLISLKRINAGLNVIGIPSEIISPKKVAELHHLLNVHDLVGAMHVPEDAVVSSADVALALASAASQNG-VQIYDRTSVLHVMVKKGQ-VTGVETDKGQIECQYFVNCAGQWAYELGLSNEEPVSIPLHACEHFYLLTRPLETPLQSSTPTIVDADGRIYIRNWQGGILSGGFEKNPKPIFTEG-KNQLEIQNLQEDWDHFEPLLSSLLRRMPELETLEIMKLVNCPETFTPDMRCIMGESPAVQGYFVLAGMNSAGLSFGGGAGKYLAEWMVHGYPSE-NVWELDLKRFGALQSSRTFLRHRVM-EVMPLMYDLKVPRWDFQT-GRQLRTSPLYDRLDAQGARWMEKHGFERPKYFVPPDKDLLALEQSKTFYKPDWFDIVESEVKCCKEAVCVIDMSSFTKFEITSTGDQALEVLQYLFSNDLDVPVGHIVH---TGMLNEGGGYENDCSIARLNKRSFFMISPTDQQVHCWAWLKKHMPKDSNLLLEDVTWKYTALNLIGPRAVDVLSELSYAPMTPDHFPSLFCKEMSVGYANGIRVMSMTHTGEPGFMLYIPIEYALHVYNEVMSVGQKYGIRNAGYYALRSLRIEKFFAFWGQDINNLTTPLECGRESRVKLEKGMDFIGRDALLQQKQNGVYKRLTMFILDDHDSDLDLWPWWGEPIYRNG--QYVGKTTSSAYSYSLERHVCLGFVHNFSEDTGEEQVV---TADFINR 837 The following BLAST results are available for this feature:
BLAST of TCONS_00053215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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