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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053194 ID=TCONS_00053194|Name=TCONS_00053194|organism=Clytia hemisphaerica|type=transcript|length=2114bp
GGGATAAAAAGCATTTTTCCAAGggaatttttgcaaattttgcttttttc
cagggaagaatttttttgacttgaaaaggttcgtccttcctctgtatggt
tttttaatggaatagcccaatttcacatcattgtgtaaaaaatcaggaaa
aaagaaagaaagaatttcatacaagtctaaaaaaccccatttttacgcac
ttttggcccaaatttgccaattttatttttcgaaaaacggGCTCTACTCT
ATCGATTTTAAACAATACCAtattacatcagtgtgcaaaaaatcagaaaa
aagtaccaAGTCAATCGAgagagaaatgctcattttccctaaaagtgaca
aaagggaatttccctaaataagaaaatccgatctTTACggtcaaaaataa
tttgcgaaaaaaacaacttgagccactttttagattgtctgtacacaaac
tcgattctacggctaatttcaaaattcattcccGTAGAGGGTCAAAAACA
GTTCAAAAACAGTTTAAAATgtgctaaaaacaaaaaattatgaaacaaaa
ctaaaaatttcagCATAATTGGCTTGTCTACTGTTTTGAATCGGAACGTC
AATTTAACTACAAAAACTAAAGTCAAGGCGAAGTCGTCAAGATCTTTTAA
AGACGACAGCCTCTTCCAAAGAATATCCAAAGGATATGACACATTTATAG
ATTCTTAGTCAGTTGCGTCAGTTAATGCCCAGATAATTCTTCAAACATCC
AGGTAGCTTACCTTTGATATCAGTTTTGTCAACAGATTTTAAACAAGCCA
ACCgtgcttgatttttcaaactgttttcTTTAAAACTAACATTTTGAACT
tgaatacaaaatattttttctggttCTTCATTTCCGTTAAACCAATGCTC
GTATTCATCATGATACAAATGGTGATCTTCAAGAGATAGAATGGCTAACT
CTTCGAACCCATTCCAGTTAAAATCATAGGTGTCATATCTGTATTCAAAA
CGATGCTGGAACACCTCCACACCACtcaaaatatcataaataaatacACT
TTCACCTTTCTGCTCCATTGATCCAGTGATAACGCAAAGAAAAGGACGCC
CagaatttgttttaaatcgAGGGCGTATGAAAGCGGTATCAGGATAAAAA
TAGGGAGTAAATTTTGTCCAAGTCACTGGTCCAAATTCTGTCATATTGAA
GGTCTCCAAATCAAAAGATAAATTCTTCTTATGGATCCAGACAACAGCAA
TCATGGAAGAACCAATTTGCTCGACAAGCCAAACATTGGCATCTAGCCGG
GAAAGATCCTTGGTAAACAAGCGATttccagaaaaatcaaaaccatgCAG
AGACTTTCGGTGATCATGAAACTCTTTCAAGTAAAAGACATCATGGTCAA
AATCAACAAACACATCAGTCTGCAAGCCTTCTCTATTAAATCTGACAGTG
TTTTCTGAGACCAAGATACGTTTACAATGATTGATTCTCTCAGCGGTATA
TTCAATAATATCCAAGGTAAATGAGTTTTCATTATCAGTAAGAACTATCA
AGAAACGACCATAGCTATCCAAATCCCTTAAACCTGCAAACTTGATTGAC
GAATTTCGGGTATGAGTTAAAAGTATACAGTTTTGATCACTAGCCTGATC
CATTGACACAAATGAATCATCACCATTCTCTTGTCTTGTTAGAATATTCG
TTAATGATCCGCTGGTAATTCGTACGGGaaaatgattttcattttgtgtG
CTTGTGATATTGAACCAGCGAGTAAGCTTTGGGTCGTACAGGAGCTTTGA
TTGGCCTCTTACACAACTCAATTTAATAAGATTGCAATCAAGTTCCTGGA
ATTCGTCATCTTTGTCGCAGTAATGAACTCCAACGAGTGCCTTAACATCA
CCATGAAATTTAGATTCGACCAGGATCGtatgaaattttccagattcatC
AAATCCATGCCAATCACCTTGAAAGATCTTAATTAATTTCCAAttattgc
tgaaaatatttcccCAGCTCGTACAACTCTTTTCAGCTGATTTGAGAAAT
GGTCTTCGTTGAACAACAGCCTGCATTCTCATGGATAATattcttttaga
ttttttcactgaaa Run BLAST on NCBI protein sequence of TCONS_00053194-protein >TCONS_00053194-protein ID=TCONS_00053194-protein|Name=TCONS_00053194-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
SVKKSKRILSMRMQAVVQRRPFLKSAEKSCTSWGNIFSNNWKLIKIFQGD
WHGFDESGKFHTILVESKFHGDVKALVGVHYCDKDDEFQELDCNLIKLSC
VRGQSKLLYDPKLTRWFNITSTQNENHFPVRITSGSLTNILTRQENGDDS
FVSMDQASDQNCILLTHTRNSSIKFAGLRDLDSYGRFLIVLTDNENSFTL
DIIEYTAERINHCKRILVSENTVRFNREGLQTDVFVDFDHDVFYLKEFHD
HRKSLHGFDFSGNRLFTKDLSRLDANVWLVEQIGSSMIAVVWIHKKNLSF
DLETFNMTEFGPVTWTKFTPYFYPDTAFIRPRFKTNSGRPFLCVITGSME
QKGESVFIYDILSGVEVFQHRFEYRYDTYDFNWNGFEELAILSLEDHHLY
HDEYEHWFNGNEEPEKIFCIQVQNVSFKENSLKNQARLACLKSVDKTDIK
GKLPGCLKNYLGIN Run BLAST on NCBI transcript from alignment at scaffold_226:407811..409924 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053194 ID=TCONS_00053194|Name=TCONS_00053194|organism=Clytia hemisphaerica|type=transcript|length=2114bp|location=Sequence derived from alignment at scaffold_226:407811..409924 (Clytia hemisphaerica)
tttcagtgaaaaaatctaaaagaatATTATCCATGAGAATGCAGGCTGTT
GTTCAACGAAGACCATTTCTCAAATCAGCTGAAAAGAGTTGTACGAGCTG
gggaaatattttcagcaataaTTGGAAATTAATTAAGATCTTTCAAGGTG
ATTGGCATGGATTTGatgaatctggaaaatttcataCGATCCTGGTCGAA
TCTAAATTTCATGGTGATGTTAAGGCACTCGTTGGAGTTCATTACTGCGA
CAAAGATGACGAATTCCAGGAACTTGATTGCAATCTTATTAAATTGAGTT
GTGTAAGAGGCCAATCAAAGCTCCTGTACGACCCAAAGCTTACTCGCTGG
TTCAATATCACAAGCacacaaaatgaaaatcattttCCCGTACGAATTAC
CAGCGGATCATTAACGAATATTCTAACAAGACAAGAGAATGGTGATGATT
CATTTGTGTCAATGGATCAGGCTAGTGATCAAAACTGTATACTTTTAACT
CATACCCGAAATTCGTCAATCAAGTTTGCAGGTTTAAGGGATTTGGATAG
CTATGGTCGTTTCTTGATAGTTCTTACTGATAATGAAAACTCATTTACCT
TGGATATTATTGAATATACCGCTGAGAGAATCAATCATTGTAAACGTATC
TTGGTCTCAGAAAACACTGTCAGATTTAATAGAGAAGGCTTGCAGACTGA
TGTGTTTGTTGATTTTGACCATGATGTCTTTTACTTGAAAGAGTTTCATG
ATCACCGAAAGTCTCTGcatggttttgatttttctggaaATCGCTTGTTT
ACCAAGGATCTTTCCCGGCTAGATGCCAATGTTTGGCTTGTCGAGCAAAT
TGGTTCTTCCATGATTGCTGTTGTCTGGATCCATAAGAAGAATTTATCTT
TTGATTTGGAGACCTTCAATATGACAGAATTTGGACCAGTGACTTGGACA
AAATTTACTCCCTATTTTTATCCTGATACCGCTTTCATACGCCCTcgatt
taaaacaaattctGGGCGTCCTTTTCTTTGCGTTATCACTGGATCAATGG
AGCAGAAAGGTGAAAGTgtatttatttatgatattttgaGTGGTGTGGAG
GTGTTCCAGCATCGTTTTGAATACAGATATGACACCTATGATTTTAACTG
GAATGGGTTCGAAGAGTTAGCCATTCTATCTCTTGAAGATCACCATTTGT
ATCATGATGAATACGAGCATTGGTTTAACGGAAATGAAGaaccagaaaaa
atattttgtattcaAGTTCAAAATGTTAGTTTTAAAgaaaacagtttgaa
aaatcaagcacGGTTGGCTTGTTTAAAATCTGTTGACAAAACTGATATCA
AAGGTAAGCTACCTGGATGTTTGAAGAATTATCTGGGCATTAACTGACGC
AACTGACTAAGAATCTATAAATGTGTCATATCCTTTGGATATTCTTTGGA
AGAGGCTGTCGTCTTTAAAAGATCTTGACGACTTCGCCTTGACTTTAGTT
TTTGTAGTTAAATTGACGTTCCGATTCAAAACAGTAGACAAGCCAATTAT
GctgaaatttttagttttgtttcataattttttgtttttagcacATTTTA
AACTGTTTTTGAACTGTTTTTGACCCTCTACgggaatgaattttgaaatt
agccgtagaatcgagtttgtgtacagacaatctaaaaagtggctcaagtt
gtttttttcgcaaattatttttgaccGTAAagatcggattttcttattta
gggaaattcccttttgtcacttttagggaaaatgagcatttctctcTCGA
TTGACTtggtacttttttctgattttttgcacactgatgtaataTGGTAT
TGTTTAAAATCGATAGAGTAGAGCccgtttttcgaaaaataaaattggca
aatttgggccaaaagtgcgtaaaaatggggttttttagacttgtatgaaa
ttctttctttcttttttcctgattttttacacaatgatgtgaaattgggc
tattccattaaaaaaccatacagaggaaggacgaaccttttcaagtcaaa
aaaattcttccctggaaaaaagcaaaatttgcaaaaattccCTTGGAAAA
ATGCTTTTTATCCC Coding sequence (CDS) from alignment at scaffold_226:407811..409924 >TCONS_00053194 ID=TCONS_00053194|Name=TCONS_00053194|organism=Clytia hemisphaerica|type=CDS|length=1395bp|location=Sequence derived from alignment at scaffold_226:407811..409924 (Clytia hemisphaerica)
tcagtgaaaaaatctaaaagaatATTATCCATGAGAATGCAGGCTGTTGT
TCAACGAAGACCATTTCTCAAATCAGCTGAAAAGAGTTGTACGAGCTGgg
gaaatattttcagcaataaTTGGAAATTAATTAAGATCTTTCAAGGTGAT
TGGCATGGATTTGatgaatctggaaaatttcataCGATCCTGGTCGAATC
TAAATTTCATGGTGATGTTAAGGCACTCGTTGGAGTTCATTACTGCGACA
AAGATGACGAATTCCAGGAACTTGATTGCAATCTTATTAAATTGAGTTGT
GTAAGAGGCCAATCAAAGCTCCTGTACGACCCAAAGCTTACTCGCTGGTT
CAATATCACAAGCacacaaaatgaaaatcattttCCCGTACGAATTACCA
GCGGATCATTAACGAATATTCTAACAAGACAAGAGAATGGTGATGATTCA
TTTGTGTCAATGGATCAGGCTAGTGATCAAAACTGTATACTTTTAACTCA
TACCCGAAATTCGTCAATCAAGTTTGCAGGTTTAAGGGATTTGGATAGCT
ATGGTCGTTTCTTGATAGTTCTTACTGATAATGAAAACTCATTTACCTTG
GATATTATTGAATATACCGCTGAGAGAATCAATCATTGTAAACGTATCTT
GGTCTCAGAAAACACTGTCAGATTTAATAGAGAAGGCTTGCAGACTGATG
TGTTTGTTGATTTTGACCATGATGTCTTTTACTTGAAAGAGTTTCATGAT
CACCGAAAGTCTCTGcatggttttgatttttctggaaATCGCTTGTTTAC
CAAGGATCTTTCCCGGCTAGATGCCAATGTTTGGCTTGTCGAGCAAATTG
GTTCTTCCATGATTGCTGTTGTCTGGATCCATAAGAAGAATTTATCTTTT
GATTTGGAGACCTTCAATATGACAGAATTTGGACCAGTGACTTGGACAAA
ATTTACTCCCTATTTTTATCCTGATACCGCTTTCATACGCCCTcgattta
aaacaaattctGGGCGTCCTTTTCTTTGCGTTATCACTGGATCAATGGAG
CAGAAAGGTGAAAGTgtatttatttatgatattttgaGTGGTGTGGAGGT
GTTCCAGCATCGTTTTGAATACAGATATGACACCTATGATTTTAACTGGA
ATGGGTTCGAAGAGTTAGCCATTCTATCTCTTGAAGATCACCATTTGTAT
CATGATGAATACGAGCATTGGTTTAACGGAAATGAAGaaccagaaaaaat
attttgtattcaAGTTCAAAATGTTAGTTTTAAAgaaaacagtttgaaaa
atcaagcacGGTTGGCTTGTTTAAAATCTGTTGACAAAACTGATATCAAA
GGTAAGCTACCTGGATGTTTGAAGAATTATCTGGGCATTAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053194-exon-scaffold_226-1491911889:407811..409924 | TCONS_00053194-exon-scaffold_226-1491911889:407811..409924 | Clytia hemisphaerica | exon |
| TCONS_00053194-exon-scaffold_226-1510915933:407811..409924 | TCONS_00053194-exon-scaffold_226-1510915933:407811..409924 | Clytia hemisphaerica | exon |
| TCONS_00053194-exon-scaffold_226-1575043694:407811..409924 | TCONS_00053194-exon-scaffold_226-1575043694:407811..409924 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:407811..409924 . |
Blast
The following BLAST results are available for this feature:
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