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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053183 ID=TCONS_00053183|Name=TCONS_00053183|organism=Clytia hemisphaerica|type=transcript|length=911bp
CGGGCTCGTCCTCTCTATCTTATGCTTCTTCTTCGCAAATTGTCTTGTCA
AACTGGTTTATATCAAAAACCCCGATATTCCGATATCGGGTTACCAAATC
GTATTCATAAGATCAATCGTACAACTTGTGTTGGTAGCCATTCAGATGTT
TAGAGAACCGATACATCCATTAGGAGGGTTTAAATGGAACAAACAGAAAC
TACTTTTACTTATTGTGACGGGTGTATCAAACATTACGAACCAGATATTC
ATATGTGAAAGTACCCGACACATAAGCCCTGGAGCTTTCCAGATAATCCT
ATCAACGGCACCAATATTTGGACTTGTATTTGAATTGGTGGTCCTCAAAG
AACGTTTTTATTTGATGAGATTCCAATTCGGCATGATAACAGTTGTCGGT
GTCATAATCGCACTTTACCCTGAATTCAAAACGCAAGAGTCGGTAGTCGG
CATCATATACGGCTTCATCGCGACCATTATGTATGCTGTATTTTGTGTCG
GTGTGCGAACCAGCCATTTGTTACGTATTGAAAATTCagttattttgaat
attttttatccAAGCTGGATAGGAGCTGTTTCGACGCCGCTTTTAATCTT
GATAGATCCATCCGCTGTCACTATTCTAGACGGGTTACCTCTCACTTATT
GGCTCGTTTTAATAATAGCTGGgctactttattatttgaattttgCTGGA
TTTATATTCGGTATGAAGTATAACAGTCCGTTTGTTTCTATGGTGATTAT
AGACTGTTTCCCAGTCATCCTAGCATACATTTATATGGTTGTTGTTGATA
AGTATGACAGTCACGCATCTTCATTGGTTGTTGGTATGCtattaattttc
tttggttGTTTTGCTATGACTTTATCAAGtgtttttgaaatcaaaacttG
GAAAGAATTAC Run BLAST on NCBI protein sequence of TCONS_00053183-protein >TCONS_00053183-protein ID=TCONS_00053183-protein|Name=TCONS_00053183-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
GLVLSILCFFFANCLVKLVYIKNPDIPISGYQIVFIRSIVQLVLVAIQMF
REPIHPLGGFKWNKQKLLLLIVTGVSNITNQIFICESTRHISPGAFQIIL
STAPIFGLVFELVVLKERFYLMRFQFGMITVVGVIIALYPEFKTQESVVG
IIYGFIATIMYAVFCVGVRTSHLLRIENSVILNIFYPSWIGAVSTPLLIL
IDPSAVTILDGLPLTYWLVLIIAGLLYYLNFAGFIFGMKYNSPFVSMVII
DCFPVILAYIYMVVVDKYDSHASSLVVGMLLIFFGCFAMTLSSVFEIKTW
KEL Run BLAST on NCBI transcript from alignment at scaffold_226:75104..76014 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053183 ID=TCONS_00053183|Name=TCONS_00053183|organism=Clytia hemisphaerica|type=transcript|length=911bp|location=Sequence derived from alignment at scaffold_226:75104..76014 (Clytia hemisphaerica)
GTAATTCTTTCCaagttttgatttcaaaaacaCTTGATAAAGTCATAGCA
AAACaaccaaagaaaattaataGCATACCAACAACCAATGAAGATGCGTG
ACTGTCATACTTATCAACAACAACCATATAAATGTATGCTAGGATGACTG
GGAAACAGTCTATAATCACCATAGAAACAAACGGACTGTTATACTTCATA
CCGAATATAAATCCAGcaaaattcaaataataaagtagcCCAGCTATTAT
TAAAACGAGCCAATAAGTGAGAGGTAACCCGTCTAGAATAGTGACAGCGG
ATGGATCTATCAAGATTAAAAGCGGCGTCGAAACAGCTCCTATCCAGCTT
ggataaaaaatattcaaaataactGAATTTTCAATACGTAACAAATGGCT
GGTTCGCACACCGACACAAAATACAGCATACATAATGGTCGCGATGAAGC
CGTATATGATGCCGACTACCGACTCTTGCGTTTTGAATTCAGGGTAAAGT
GCGATTATGACACCGACAACTGTTATCATGCCGAATTGGAATCTCATCAA
ATAAAAACGTTCTTTGAGGACCACCAATTCAAATACAAGTCCAAATATTG
GTGCCGTTGATAGGATTATCTGGAAAGCTCCAGGGCTTATGTGTCGGGTA
CTTTCACATATGAATATCTGGTTCGTAATGTTTGATACACCCGTCACAAT
AAGTAAAAGTAGTTTCTGTTTGTTCCATTTAAACCCTCCTAATGGATGTA
TCGGTTCTCTAAACATCTGAATGGCTACCAACACAAGTTGTACGATTGAT
CTTATGAATACGATTTGGTAACCCGATATCGGAATATCGGGGTTTTTGAT
ATAAACCAGTTTGACAAGACAATTTGCGAAGAAGAAGCATAAGATAGAGA
GGACGAGCCCG Coding sequence (CDS) from alignment at scaffold_226:75104..76014 >TCONS_00053183 ID=TCONS_00053183|Name=TCONS_00053183|organism=Clytia hemisphaerica|type=CDS|length=909bp|location=Sequence derived from alignment at scaffold_226:75104..76014 (Clytia hemisphaerica)
TAATTCTTTCCaagttttgatttcaaaaacaCTTGATAAAGTCATAGCAA
AACaaccaaagaaaattaataGCATACCAACAACCAATGAAGATGCGTGA
CTGTCATACTTATCAACAACAACCATATAAATGTATGCTAGGATGACTGG
GAAACAGTCTATAATCACCATAGAAACAAACGGACTGTTATACTTCATAC
CGAATATAAATCCAGcaaaattcaaataataaagtagcCCAGCTATTATT
AAAACGAGCCAATAAGTGAGAGGTAACCCGTCTAGAATAGTGACAGCGGA
TGGATCTATCAAGATTAAAAGCGGCGTCGAAACAGCTCCTATCCAGCTTg
gataaaaaatattcaaaataactGAATTTTCAATACGTAACAAATGGCTG
GTTCGCACACCGACACAAAATACAGCATACATAATGGTCGCGATGAAGCC
GTATATGATGCCGACTACCGACTCTTGCGTTTTGAATTCAGGGTAAAGTG
CGATTATGACACCGACAACTGTTATCATGCCGAATTGGAATCTCATCAAA
TAAAAACGTTCTTTGAGGACCACCAATTCAAATACAAGTCCAAATATTGG
TGCCGTTGATAGGATTATCTGGAAAGCTCCAGGGCTTATGTGTCGGGTAC
TTTCACATATGAATATCTGGTTCGTAATGTTTGATACACCCGTCACAATA
AGTAAAAGTAGTTTCTGTTTGTTCCATTTAAACCCTCCTAATGGATGTAT
CGGTTCTCTAAACATCTGAATGGCTACCAACACAAGTTGTACGATTGATC
TTATGAATACGATTTGGTAACCCGATATCGGAATATCGGGGTTTTTGATA
TAAACCAGTTTGACAAGACAATTTGCGAAGAAGAAGCATAAGATAGAGAG
GACGAGCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053183-exon-scaffold_226-1491911889:75104..76014 | TCONS_00053183-exon-scaffold_226-1491911889:75104..76014 | Clytia hemisphaerica | exon |
| TCONS_00053183-exon-scaffold_226-1510915933:75104..76014 | TCONS_00053183-exon-scaffold_226-1510915933:75104..76014 | Clytia hemisphaerica | exon |
| TCONS_00053183-exon-scaffold_226-1575043694:75104..76014 | TCONS_00053183-exon-scaffold_226-1575043694:75104..76014 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:75104..76014 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000620 | EamA_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
| cellular_component |
GO:0016020 |
membrane |
Blast
The following BLAST results are available for this feature:
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