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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053087 ID=TCONS_00053087|Name=TCONS_00053087|organism=Clytia hemisphaerica|type=transcript|length=1442bp
TATTACCTTACGATTTTGGCGAGgagaaaaagttgtaaaaaaattaattt
ggtgAGAACTCTTGGCAAAACACAATTCTTTTATTTTGCCGAGAACTTAA
TTTTGACAAGGATTTATTTCGGCAagtaaatcaattttcaatcttTGAGG
GAGCTAAATTTAGCGAACGACGTAGTGAATCATTTTCCATTCGCCTTCGA
TGTAGTAAGGAGCAAGTGTTTATTATTTAGCTTCCTTGTCTAAAGATTTG
TACCTTTTGATCCATAGCGAAGAAATAGTTAATATTATACCCTTTGTTAT
GAACAAAGAAATGTTGTGGATTTAACGTATAGCTTTAAATCGTGGTTTAA
CTTTATTCTATCACGCCCGTGGCGGTATATACTTACGTTCGGTAAAATAC
CCGAGAGGCCCATCTCGACCAAGACGGCTTCGTTAGACCTTTCGAGATAA
AGCTTCAGTGAACTAAGCAGTGAAAATTTTATAAGTACATTTTAAGAAAT
CTAAGAATATCTCATTCATCATGGTTTCCGATAAAGTTATTAAAGAGAAA
TGCAAAGAGTTGGGGATCAAGTTTCACGCCAAAACAAGAATTTCGCTACT
TAAGCAGAAACTAACCAACCATGGCGTTGATCTTAGTACACTAGTAGAGC
AAACATCAAATGAGTTAAACGAGAATCTCATCCCTGCCATCGTAGAGGAG
GTTATGAAAAGGCTCAATCATGCGGAAAGTAGTTCTACGAAGGACATTAg
cgaaagaaaatcaacaaagaatggcaaaaaatcgaaaaacaaaaaacgta
agagAAGTTTGGTTGTCAGTGATGGTAGTAGCAGTAGCAGTAGCGAGGAA
TTGTCAAGCTCGGATGAAGAGGAGGAAACACGCacaaaaagaaagaagtc
aAAAAGGACTTTTGGTAAGAGTACACTCTCTTTAACTTATTGTGTGGCAC
CGGCTGTAAAAAGTAAACTACTTCAAGGGAAATACGTCCCACTTTACAAA
CTGTTGCCAGGTTTTGACTCGAGAGGCCAAGAAACAGCGAGCGTTCTTAG
TGAGGCTGGTGGTTTGATACAATTGAATGTTGGTGATGGAAATAAGGAGC
GACGTTTGGGAAAGCAGAAGCTTGATTTGTGTCAGATGATCTTGGCTTTG
CTAAAGTTTAAAGAACTTATATCAGAGGATTTTCCATCAAGGGCTAGAGA
CATTGACATGTATCTAGCTAATGTAGTTATGATTGCCAATAAGTATGGGG
GTTTAGCATATTGGTATTATCACTTATATTTCTGGGACAAGGCGGCTGAG
CTTTCTGATAGGGGAGAGGAATTAAACTGGTGCGCTTTAGACGCGGAGGC
TTTGCATGCGGCGGTCGCGAACAACGCTCCTGCCAACTTTTGTGACAACT
GTCAGACTTGGTATCACCACACTTCCAAGTGTCCGTTCGATC Run BLAST on NCBI protein sequence of TCONS_00053087-protein >TCONS_00053087-protein ID=TCONS_00053087-protein|Name=TCONS_00053087-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
MVSDKVIKEKCKELGIKFHAKTRISLLKQKLTNHGVDLSTLVEQTSNELN
ENLIPAIVEEVMKRLNHAESSSTKDISERKSTKNGKKSKNKKRKRSLVVS
DGSSSSSSEELSSSDEEEETRTKRKKSKRTFGKSTLSLTYCVAPAVKSKL
LQGKYVPLYKLLPGFDSRGQETASVLSEAGGLIQLNVGDGNKERRLGKQK
LDLCQMILALLKFKELISEDFPSRARDIDMYLANVVMIANKYGGLAYWYY
HLYFWDKAAELSDRGEELNWCALDAEALHAAVANNAPANFCDNCQTWYHH
TSKCPFD Run BLAST on NCBI transcript from alignment at scaffold_225:193458..194899 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053087 ID=TCONS_00053087|Name=TCONS_00053087|organism=Clytia hemisphaerica|type=transcript|length=1442bp|location=Sequence derived from alignment at scaffold_225:193458..194899 (Clytia hemisphaerica)
GATCGAACGGACACTTGGAAGTGTGGTGATACCAAGTCTGACAGTTGTCA
CAAAAGTTGGCAGGAGCGTTGTTCGCGACCGCCGCATGCAAAGCCTCCGC
GTCTAAAGCGCACCAGTTTAATTCCTCTCCCCTATCAGAAAGCTCAGCCG
CCTTGTCCCAGAAATATAAGTGATAATACCAATATGCTAAACCCCCATAC
TTATTGGCAATCATAACTACATTAGCTAGATACATGTCAATGTCTCTAGC
CCTTGATGGAAAATCCTCTGATATAAGTTCTTTAAACTTTAGCAAAGCCA
AGATCATCTGACACAAATCAAGCTTCTGCTTTCCCAAACGTCGCTCCTTA
TTTCCATCACCAACATTCAATTGTATCAAACCACCAGCCTCACTAAGAAC
GCTCGCTGTTTCTTGGCCTCTCGAGTCAAAACCTGGCAACAGTTTGTAAA
GTGGGACGTATTTCCCTTGAAGTAGTTTACTTTTTACAGCCGGTGCCACA
CAATAAGTTAAAGAGAGTGTACTCTTACCAAAAGTCCTTTTtgacttctt
tctttttgtGCGTGTTTCCTCCTCTTCATCCGAGCTTGACAATTCCTCGC
TACTGCTACTGCTACTACCATCACTGACAACCAAACTTctcttacgtttt
ttgtttttcgattttttgccattctttgttgattttctttcgcTAATGTC
CTTCGTAGAACTACTTTCCGCATGATTGAGCCTTTTCATAACCTCCTCTA
CGATGGCAGGGATGAGATTCTCGTTTAACTCATTTGATGTTTGCTCTACT
AGTGTACTAAGATCAACGCCATGGTTGGTTAGTTTCTGCTTAAGTAGCGA
AATTCTTGTTTTGGCGTGAAACTTGATCCCCAACTCTTTGCATTTCTCTT
TAATAACTTTATCGGAAACCATGATGAATGAGATATTCTTAGATTTCTTA
AAATGTACTTATAAAATTTTCACTGCTTAGTTCACTGAAGCTTTATCTCG
AAAGGTCTAACGAAGCCGTCTTGGTCGAGATGGGCCTCTCGGGTATTTTA
CCGAACGTAAGTATATACCGCCACGGGCGTGATAGAATAAAGTTAAACCA
CGATTTAAAGCTATACGTTAAATCCACAACATTTCTTTGTTCATAACAAA
GGGTATAATATTAACTATTTCTTCGCTATGGATCAAAAGGTACAAATCTT
TAGACAAGGAAGCTAAATAATAAACACTTGCTCCTTACTACATCGAAGGC
GAATGGAAAATGATTCACTACGTCGTTCGCTAAATTTAGCTCCCTCAaag
attgaaaattgatttactTGCCGAAATAAATCCTTGTCAAAATTAAGTTC
TCGGCAAAATAAAAGAATTGTGTTTTGCCAAGAGTTCTcaccaaattaat
ttttttacaactttttctcCTCGCCAAAATCGTAAGGTAATA Coding sequence (CDS) from alignment at scaffold_225:193458..194899 >TCONS_00053087 ID=TCONS_00053087|Name=TCONS_00053087|organism=Clytia hemisphaerica|type=CDS|length=921bp|location=Sequence derived from alignment at scaffold_225:193458..194899 (Clytia hemisphaerica)
ATCGAACGGACACTTGGAAGTGTGGTGATACCAAGTCTGACAGTTGTCAC
AAAAGTTGGCAGGAGCGTTGTTCGCGACCGCCGCATGCAAAGCCTCCGCG
TCTAAAGCGCACCAGTTTAATTCCTCTCCCCTATCAGAAAGCTCAGCCGC
CTTGTCCCAGAAATATAAGTGATAATACCAATATGCTAAACCCCCATACT
TATTGGCAATCATAACTACATTAGCTAGATACATGTCAATGTCTCTAGCC
CTTGATGGAAAATCCTCTGATATAAGTTCTTTAAACTTTAGCAAAGCCAA
GATCATCTGACACAAATCAAGCTTCTGCTTTCCCAAACGTCGCTCCTTAT
TTCCATCACCAACATTCAATTGTATCAAACCACCAGCCTCACTAAGAACG
CTCGCTGTTTCTTGGCCTCTCGAGTCAAAACCTGGCAACAGTTTGTAAAG
TGGGACGTATTTCCCTTGAAGTAGTTTACTTTTTACAGCCGGTGCCACAC
AATAAGTTAAAGAGAGTGTACTCTTACCAAAAGTCCTTTTtgacttcttt
ctttttgtGCGTGTTTCCTCCTCTTCATCCGAGCTTGACAATTCCTCGCT
ACTGCTACTGCTACTACCATCACTGACAACCAAACTTctcttacgttttt
tgtttttcgattttttgccattctttgttgattttctttcgcTAATGTCC
TTCGTAGAACTACTTTCCGCATGATTGAGCCTTTTCATAACCTCCTCTAC
GATGGCAGGGATGAGATTCTCGTTTAACTCATTTGATGTTTGCTCTACTA
GTGTACTAAGATCAACGCCATGGTTGGTTAGTTTCTGCTTAAGTAGCGAA
ATTCTTGTTTTGGCGTGAAACTTGATCCCCAACTCTTTGCATTTCTCTTT
AATAACTTTATCGGAAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053087-exon-scaffold_225-1491911889:193458..194899 | TCONS_00053087-exon-scaffold_225-1491911889:193458..194899 | Clytia hemisphaerica | exon |
| TCONS_00053087-exon-scaffold_225-1510915933:193458..194899 | TCONS_00053087-exon-scaffold_225-1510915933:193458..194899 | Clytia hemisphaerica | exon |
| TCONS_00053087-exon-scaffold_225-1575043694:193458..194899 | TCONS_00053087-exon-scaffold_225-1575043694:193458..194899 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_225 | supercontig | scaffold_225:193458..194899 . |
Blast
The following BLAST results are available for this feature:
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