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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053079 ID=TCONS_00053079|Name=TCONS_00053079|organism=Clytia hemisphaerica|type=transcript|length=5654bpRun BLAST on NCBI protein sequence of TCONS_00053079-protein >TCONS_00053079-protein ID=TCONS_00053079-protein|Name=TCONS_00053079-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1082bp MKPTSSLPSTPQLNHPISSNVVSTPNKTNGSTSSSRLCACLSVAEITENNRun BLAST on NCBI transcript from alignment at scaffold_225:215748..235785- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053079 ID=TCONS_00053079|Name=TCONS_00053079|organism=Clytia hemisphaerica|type=transcript|length=20038bp|location=Sequence derived from alignment at scaffold_225:215748..235785- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_225:215748..235785- >TCONS_00053079 ID=TCONS_00053079|Name=TCONS_00053079|organism=Clytia hemisphaerica|type=CDS|length=25992bp|location=Sequence derived from alignment at scaffold_225:215748..235785- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053079 vs. Swiss-Prot (Human)
Match: DAB2P (Disabled homolog 2-interacting protein OS=Homo sapiens GN=DAB2IP PE=1 SV=2) HSP 1 Score: 407.912 bits (1047), Expect = 8.735e-119 Identity = 238/624 (38.14%), Postives = 352/624 (56.41%), Query Frame = 2
Query: 620 SLKSPSSDLVASSPLKNNGGDVFTRSGSFGRQRSDSATGFKQFISRKLAINRTKSTGKLSTQKSDVASPRSPNRSWRSHDSDGSVDEEYLEDVIDLSDPDLSIVRPIHQSVLYRPYCLQILTPHVLKYVCCYTEEEYQVWLNSLVSAVNSNRDQKVRLDTSLSVWVIEAKGVPARKKYFCELFLDKVLFSRTSVKFKNDMLFWGEKFVFEDLPPTESLTISLFRESDTKKKRNKDKHFFVGSSVIDLLSMETNIENEKWVSVFVPGISPKLQQKTLVNGKADKSEQPFIRAKFKYETTIVLPLASYQTLHEYVLKNYLLLVSTLEAGISLKIKDLLAQTLLKILQANNGAEEFLVSVIMNECYNTTD-ENLTFRGNSLATKSIDTYMKMIGKNYLQETLGSFIKCVYEAEEDTEVDPQKIASSNANLTNNQQYLKKLLEEVWKNITESVPALPKRLRNVFSMVRQRCEEKGL-GLATKITSASLFLRFLCPAILSPSLFQLTQEYPGEKVARSLTLVAKTLQNLANFTRFGIKESYMEFLNEFVESQMPSMEAFLQSVSADLTKSKDRKISEAVGGEN-IDLSRALSILYHILQSEIPNLAKEESENLKDLKPILRHISDIHEA 2482
S KSPS + A++P + G GS R +S L R+ + ++S + PR + RSH+S S + +DLS + +++P+H S+L + YC ++ T K C + E W+ +L AV+ N+D R++ L +WVIEAK +PA+KKY CEL LD VL++RT+ K K D +FWGE F F +LPP ++T+ L+RE+D KKK K+++ ++G + S+ EKW V P N K K P IR K +Y+T +LP+ Y+ E++ +YL L + LE +S K K+ +A L+ ILQ+ ++FL ++M+E D E+L FR N+LATK+I+ Y+K++G+ YLQ+ LG FIK +YE++E+ EVDP K S A+L +Q LK E + I S P+ L+ VF+ RQ C +G ++ ++ SASLFLRFLCPAI+SPSLF L QEYP ++ AR+LTL+AK QNLANF +FG KE YM F+N+F+E + +M+ FL +S T +S G E IDL R LS L+ +L + L E + L P+ R + D+H A
Sbjct: 59 SEKSPSMEPSAATPFRVTGFLSRRLKGSIKRTKSQPKLDRNHSFRHILPGFRSAAAAAADNERSHLM-PRL--KESRSHESLLSPSSAV--EALDLSMEEEVVIKPVHSSILGQDYCFEVTTSSGSKCFSCRSAAERDKWMENLRRAVHPNKDNSRRVEHILKLWVIEAKDLPAKKKYLCELCLDDVLYARTTGKLKTDNVFWGEHFEFHNLPPLRTVTVHLYRETDKKKK--KERNSYLGLVSLPAASVAGRQFVEKWYPVVTP------------NPKGGKGPGPMIRIKARYQTITILPMEMYKEFAEHITNHYLGLCAALEPILSAKTKEEMASALVHILQSTGKVKDFLTDLMMSEVDRCGDNEHLIFRENTLATKAIEEYLKLVGQKYLQDALGEFIKALYESDENCEVDPSKC--SAADLPEHQGNLKMCCELAFCKIINSYCVFPRELKEVFASWRQECSSRGRPDISERLISASLFLRFLCPAIMSPSLFNLLQEYPDDRTARTLTLIAKVTQNLANFAKFGSKEEYMSFMNQFLEHEWTNMQRFLLEISNPET------LSNTAGFEGYIDLGRELSSLHSLLWEAVSQL---EQSIVSKLGPLPRILRDVHTA 652 HSP 2 Score: 100.908 bits (250), Expect = 4.317e-21 Identity = 49/127 (38.58%), Postives = 89/127 (70.08%), Query Frame = 1
Query: 4402 DVNYLRKKLRESEDQLQKTQTDLKNKTVQFEETVIHLKEKLVDADNKMKKQRIETDGQMKNVISRLLNVESELRNEHSEMEAVIAGKQKLIDIQERRIKSLESSNLRLVNALTHIKNKYSTEDQKGL 4782
D+ L+ KLR S +L++ +T K + ++ V+ + +L + + ++++Q+ + D QMK +ISRL++VE EL+ +H+EM+A + KQK+ID QE+RI SL+++N RL++ALT +K +YS + + G+
Sbjct: 1041 DLAVLQDKLRISTKKLEEYETLFKCQEETTQKLVLEYQARLEEGEERLRRQQEDKDIQMKGIISRLMSVEEELKKDHAEMQAAVDSKQKIIDAQEKRIASLDAANARLMSALTQLKERYSMQARNGI 1167 The following BLAST results are available for this feature:
BLAST of TCONS_00053079 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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