TCONS_00051768 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051768
Unique NameTCONS_00051768
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length618

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051768 ID=TCONS_00051768|Name=TCONS_00051768|organism=Clytia hemisphaerica|type=transcript|length=618bp
ACAACATTAGCTGCAAAATGGTAAGGGAAAATCCACTTTAGGTTACATAA
CGAGAATATTGTCTCCATAATCATTATTACTTGGTACTTTACTTGTGCTT
TACGTTCAGCAGAAATATCTCTTTTGGATAATCCAACAAGAAGAGCAAGA
AGGAAAGAATCGTATGATCCAATGTCATTTTCAGGTTTCATTGTTTGCAG
ATatttaatattgtatttttgacAAAGTACTGTTCCATGTTTTCTAATCC
TTGGATGCAAGACCAATTTGCCAAGTGTTTTAAAACATTCCTCCCAAACT
GTATCATCAACTGTGGCTACATCAGTAGAAAATGCTTTTAACGAGTCAGT
GAATGATGTCACAGCAACATGAAGATGCTGATGATGTGAAATTTTGTCGC
TagatgaaattatacattttgtTTTTGCAATACAAGCCTCACAAAGATAG
CTTTCTCTATCAGTGAGGAAGCGATGATCTACAAGGAAACGTACAACTTT
TACATCAACTTTAGATTTTATTATGTGCATGACACCATTTTCAACTGTAA
AGTTCTTCCAGGTTTCGTGGAAAGAGCATGAGCAGCTGAGTTTCTTTTTC
TTGACTTCAACTTCGTCT
Run BLAST on NCBI

protein sequence of TCONS_00051768-protein

>TCONS_00051768-protein ID=TCONS_00051768-protein|Name=TCONS_00051768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
DEVEVKKKKLSCSCSFHETWKNFTVENGVMHIIKSKVDVKVVRFLVDHRF
LTDRESYLCEACIAKTKCIISSSDKISHHQHLHVAVTSFTDSLKAFSTDV
ATVDDTVWEECFKTLGKLVLHPRIRKHGTVLCQKYNIKYLQTMKPENDIG
SYDSFLLALLVGLSKRDISAERKAQVKYQVIMIMETIFSLCNLKWIFPYH
FAANV
Run BLAST on NCBI

transcript from alignment at scaffold_204:79013..79630

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051768 ID=TCONS_00051768|Name=TCONS_00051768|organism=Clytia hemisphaerica|type=transcript|length=618bp|location=Sequence derived from alignment at scaffold_204:79013..79630 (Clytia hemisphaerica)
AGACGAAGTTGAAGTCAAGAAAAAGAAACTCAGCTGCTCATGCTCTTTCC
ACGAAACCTGGAAGAACTTTACAGTTGAAAATGGTGTCATGCACATAATA
AAATCTAAAGTTGATGTAAAAGTTGTACGTTTCCTTGTAGATCATCGCTT
CCTCACTGATAGAGAAAGCTATCTTTGTGAGGCTTGTATTGCAAAAacaa
aatgtataatttcatctAGCGACAAAATTTCACATCATCAGCATCTTCAT
GTTGCTGTGACATCATTCACTGACTCGTTAAAAGCATTTTCTACTGATGT
AGCCACAGTTGATGATACAGTTTGGGAGGAATGTTTTAAAACACTTGGCA
AATTGGTCTTGCATCCAAGGATTAGAAAACATGGAACAGTACTTTgtcaa
aaatacaatattaaatATCTGCAAACAATGAAACCTGAAAATGACATTGG
ATCATACGATTCTTTCCTTCTTGCTCTTCTTGTTGGATTATCCAAAAGAG
ATATTTCTGCTGAACGTAAAGCACAAGTAAAGTACCAAGTAATAATGATT
ATGGAGACAATATTCTCGTTATGTAACCTAAAGTGGATTTTCCCTTACCA
TTTTGCAGCTAATGTTGT

Coding sequence (CDS) from alignment at scaffold_204:79013..79630

>TCONS_00051768 ID=TCONS_00051768|Name=TCONS_00051768|organism=Clytia hemisphaerica|type=CDS|length=615bp|location=Sequence derived from alignment at scaffold_204:79013..79630 (Clytia hemisphaerica)
GACGAAGTTGAAGTCAAGAAAAAGAAACTCAGCTGCTCATGCTCTTTCCA
CGAAACCTGGAAGAACTTTACAGTTGAAAATGGTGTCATGCACATAATAA
AATCTAAAGTTGATGTAAAAGTTGTACGTTTCCTTGTAGATCATCGCTTC
CTCACTGATAGAGAAAGCTATCTTTGTGAGGCTTGTATTGCAAAAacaaa
atgtataatttcatctAGCGACAAAATTTCACATCATCAGCATCTTCATG
TTGCTGTGACATCATTCACTGACTCGTTAAAAGCATTTTCTACTGATGTA
GCCACAGTTGATGATACAGTTTGGGAGGAATGTTTTAAAACACTTGGCAA
ATTGGTCTTGCATCCAAGGATTAGAAAACATGGAACAGTACTTTgtcaaa
aatacaatattaaatATCTGCAAACAATGAAACCTGAAAATGACATTGGA
TCATACGATTCTTTCCTTCTTGCTCTTCTTGTTGGATTATCCAAAAGAGA
TATTTCTGCTGAACGTAAAGCACAAGTAAAGTACCAAGTAATAATGATTA
TGGAGACAATATTCTCGTTATGTAACCTAAAGTGGATTTTCCCTTACCAT
TTTGCAGCTAATGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032776XLOC_032776Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051768-proteinTCONS_00051768-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051768-exon-scaffold_204-1491911889:79013..79630TCONS_00051768-exon-scaffold_204-1491911889:79013..79630Clytia hemisphaericaexon
TCONS_00051768-exon-scaffold_204-1510915933:79013..79630TCONS_00051768-exon-scaffold_204-1510915933:79013..79630Clytia hemisphaericaexon
TCONS_00051768-exon-scaffold_204-1575043694:79013..79630TCONS_00051768-exon-scaffold_204-1575043694:79013..79630Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_204supercontigscaffold_204:79013..79630 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.173485	0.338351	0.196429	0.0960875	2.22257	1.47899	2.00738	1.67048	0.511675	1.0865	0.43941	0.346621	0.923037	0.718937	0.246277	0.634302	0.781409	0.667432	0.645465	0.771924	0.670942	1.10451	0.39783	0.72337	0.186263	1.57924	1.07047	0.380812	0.577665	0.58855
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top