TCONS_00050875 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00050875
Unique Name	TCONS_00050875
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2157

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_19:159076..164922+

transcript sequence

>TCONS_00050875 ID=TCONS_00050875|Name=TCONS_00050875|organism=Clytia hemisphaerica|type=transcript|length=2157bp
ggggggttagcacttaaggggggtcctcttacctaagggggggggtcttg
acccctctagaaactatggaCATATTTTCTCCAATCCAATCTACACAATT
GTTACAAATTTTAGGCTGGatattttttagaattattttataaacagaca
gttaaaaaaatatattaaggcgaaaatataaaaatgtagtgtttccggaa
tgcgggtgaaggaaaaaagctctcatgcagccggccggaaaaaacttttt
ttttgcttttcttgataacttaagatcattaaaatagaactttaaaaata
acttttatgtacaaaaagtataaagtaagccctgaatactaatgtatcaa
ctattagcaaacaaaacttgatttacaagctggaatatctaaccaaacga
cgtttgatagcttgaacggtcaaccTGATTTTCTTTATGACTAACCATAT
AAATGAACCCATAGTTTGCAGCTGGgtcagaaaaaagtttttcttcacCC
AGCTGGTTtctggaaacactacatttttttattttcgactAATAGTCAAT
ATACAATAAAGTACAAGGATGAGTAGCAAAAGACCAGAGCTTAAGGCTCC
CCCAGAGGTGtTCTACAATGATGTCGAAGCAAGGAAATATACATCAAATA
ctcgaatgattgaaattcaaaatcagATGACTTTGAGAGCCTTGGAATTG
TTGGCCCTACCAGAAGATGAACCTTGCTTCCTTTTGGATATTGGgtGTGG
GTCAGGGTTGAGTGGTGAGGTATTGACAGAGCAAGGACATTATTGGGTTG
GATTTGATATCAGTAGTTCCATGTTGGATATTGCAAAGGAAAGAGAAGTT
GAAGGTGATTTATTGGAACTGGATGCTGGTATGGGAGTACCTTTCCGGCC
AGGAACATTTGATGGTTGCATCAGTATTTCAGCCCTTCAGTGGCTTTGTA
ATGTTGACAAAAAATGGCATAATCCTGTAAAGAGATTACACTCATTTTTC
ACTACATTATACACAAGTCTTAAAAGAGGAGGCAAAGCCATTTTTCAGTT
CTATCCAGACAGTCCCAGTCAGGTAGAACTAATAACATCACAAGCAATGC
GTTCTGGTTTTTCTGGCGGTGTTGTTGTTGATTATCCCAACAGTACAaga
gcaaaaaaAATGTTTCTGGTTTTGTTTGCCGGAGTCAGTAATGCTGTCTT
ACCTCAGGCCTTGGGAACAGAAGGAGCTGGAAATACTGTATCTTATACAA
CAAATAGAGAGAGAAATAATAACAGAAATGGTAGAGGGAAACCAtcaaag
aaaagtaaagaatggattcaaaagaagaaagatcGGAAACGTAGACAAGG
GAAAGATGTTCGAGCTGATTCTAAGTATTCTggaagaaaaaggaaagttg
CTTTTTGAGATTGGCTTACTTACAGTTGTCATATTGGGGCTTTGATCAAC
TGGTTTGAGTGGTGTATAGTTTCCAATCGATTGAGTTGGTGATGTGGTAG
AAATGCTCAGTGTGTACCTTTACACAATACCAACAATACTTATCAATAAA
TTCTTTGATAATTTAGGATTTCATTAGATTTggcaaaaactgatttttta
ctaaaaatgaaatttcttacCATCATTATTTTATTGGAAActctattttt
attcaaaattttgtttttatacaatGCCAAAGAAATTCATATCATCTTAT
ACAAGATAATAtacaatttttgtaaacatgaCCAACACCTTGTGGGTGTA
TTTTGGTTTGTTCTGCTATTATAAGCCATGAAATTATCAAACATGTTCAT
TAATATCATCATAATATCACTAGCATAATAAACACTTTGTGGAGTAGAAC
AAggatagaaaattttttttcatagagtCTAGAGGTGCTGATGGATTCTC
CTTGGAAGACTGAAAATTTCTCCCTTTCAATTTCGACTGAAAATTCCTTT
TTGTGTACAGATAGTTTAACAAATTTCCATGACAACACATCACCAGGTGT
TGTACTTACCTGGTACAATAGTTTCTCttgaattttgtatttttttgaga
GGAAAAGATCTTTATAATACTGTTTATTGTGTCTCTCTCTGGCTCTACAA
ATATTCCAATTTTTATTAAGATTGTCGTCTGTAGCTTGAAACCTGCCATT
AGAGTTT

Run BLAST on NCBI

transcript from alignment at scaffold_19:159076..164922+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00050875 ID=TCONS_00050875|Name=TCONS_00050875|organism=Clytia hemisphaerica|type=transcript|length=5847bp|location=Sequence derived from alignment at scaffold_19:159076..164922+ (Clytia hemisphaerica)
ggggggttagcacttaaggggggtcctcttacctaagggggggggtcttg
acccctctagaaactatggaCATATTTTCTCCAATCCAATCTACACAATT
GTTACAAATTTTAGGCTGGatattttttagaattattttataaacagaca
gttaaaaaaatatattaaggcgaaaatataaaaatgtagtgtttccggaa
tgcgggtgaaggaaaaaagctctcatgcagccggccggaaaaaacttttt
ttttgcttttcttgataacttaagatcattaaaatagaactttaaaaata
acttttatgtacaaaaagtataaagtaagccctgaatactaatgtatcaa
ctattagcaaacaaaacttgatttacaagctggaatatctaaccaaacga
cgtttgatagcttgaacggtcaaccTGATTTTCTTTATGACTAACCATAT
AAATGAACCCATAGTTTGCAGCTGGgtcagaaaaaagtttttcttcacCC
AGCTGGTTtctggaaacactacatttttttattttcgactAATAGTCAAT
ATACAATAAAGTACAAGGATGAGTAGCAAAAGACCAGAGCTTAAGGCTCC
CCCAGAGGTGGTAAGCAAATTTGTTCATTATGTGCCAAGCTTCTAATTTT
ATGCCAATGTTATGGGCCACATTTACACTCATTGTTTCAAAAAGAAGCAC
ACACTGTAAAGTTGtttttaaaatctaatacatcaatttctatttctatt
tctttattagCATGAAACTTTTTAGTTTTATTTCGCTAAtggaacaaaaa
aaataaataaatgaaaaaatattattaagtaATTTAAAGACTATAAAACA
ACTATATCAAGAAATTTCTAATCAGTTtgctcttgatgaatttttttagt
TCTACAATGATGTCGAAGCAAGGAAATATACATCAAAGTAGGTTTCAAAC
TTTTTACAAAGATTTGATTAAACTTTTTGAGATCAATTCTCAATGTGTTG
TTTTTTCATTAACAATAAAAGAGTTggtttttgtataaaagttCATAAAT
TTTAAGCCTAACTCGCACTTTTGTTATAATTCTGTATGCATAGATTTTTa
aacagaaaattttaaatattatattattatatgaaatatcttttgaatac
AAGCTAGTTTTGAAATGCTTTTGAGGAATTGCTATaatattttcaatgat
tttttaactTCAGTActcgaatgattgaaattcaaaatcagATGACTTTG
AGAGCCTTGGAATTGTTGGCCCTACCAGAAGATGAACCTTGCTTCCTTTT
GGATATTGGGTTTGTACtagttacacgcttttttttaataagaaacctTC
ACTTGGCTCCAAGCCTGGAGTACCTTATtttccagagaatttcagcATCA
AAGATCCTTATCAAGTTCCTtctttacatagctgctaacaTTGGATTTAC
TAAGTATGTAGCATATGTATAAGTATAACAATGGACTAAAATACatcatt
aactttttttcttgttctcAGCCtgggcagttccttaacaaCCCCTTAGT
TTTCGAACTATTtgcagcctcaagttccttataaacataTTCCTCATAAA
AAAATGNGTTAGTTTTCAAACTATTtgcagcctcaagttccttataaaca
tattcctcataaaaaaatgtgtgaTTGATTTTATAAGGGTTGAACTATGA
TCATTATAAAATAAAGTTGGATATCACATGAAGTACTCTAAATCAGCTTT
TTAAAGCtgcaaagaaatttttttcctacaCATTTCTTGttcaaatcttt
ctttattttcagtCACACAGCATCCAGTTTATCTGTTTTTGATTAAATTA
ATGAacatgattttattatttttcaggtGTGGGTCAGGGTTGAGTGGTGA
GGTATTGACAGAGCAAGGACATTATTGGGTTGGATTTGATATCAGTAGTT
CCATGTTGGGTATATTATTTTCACTCTTATCTTTCATGTATTTACACATT
CATTAGCTTTGTTTAGTCCCTTTAATAATGTGTCTATATAAAGCATATTA
ATTTAAACCTTGAATAAATTTATAATAGAaaacaagaattttcaaaaaag
attacTCATCCTAATTTGTAGATATTGCAAAGGAAAGAGAAGTTGAAGGT
GATTTATTGGAACTGGATGCTGGTATGGGAGTACCTTTCCGGCCAGGAAC
ATTTGATGGTTGCATCAGGTTTTTTATTGTCTTATCTCTTTGTACTAGGG
TGCAACTCCTCTCTTCAAAGTAAATTTTCTGGTGATCCTTGAATTTTTAA
GAGATGGATCCTTTGCAATGGCAAAAATCTTGGAAACCCACTCTCACAGC
ATTTGAAAAATAAGTATTgtgaaaacaaaattaaattcatgCTTGATGCA
GAGGGGAGATTTTCTACATATGAAGCTTTAAAGTGAGCTCGATTGATTAA
ACAACATTTTCTTCCGTTTTCAGTATTTCAGCCCTTCAGTGGCTTTGTAA
TGTTGACAAAAAATGGCATAATCCTGTAAAGAGATTACACTCATTTTTCA
CTACATTATACACAAGTCTTGTAAGTtatattgttttcaaattttttatc
ataataCTACATTATGAAGATAAACTAACTTTCTCTCCTATTGCAAGTAG
AATAACGAAAGCATTCAGTGAGGaccttttttaaacatttgtttcccagg
catagccttcctggaaattattatctttttggaaacagatatctgtttcc
caattcaTTATGTCATCTCCTAAAAATATTGacctgtttctctctgatga
catcatcagctggagcggggaaacagatagttttaaaggaaaaagtTTTT
CCTAGAAAAACGAATCAACAAAAAggtctctcctggaaaagggaaacaga
tattttggGGAAATGGGCTTGTTGGCTGCTTCTGGAATAAGTTATTATCT
GGTTATATTCTTCTTATCAACTCaactttattttatattataagtCTTCT
TTTTGCTTTTAAGAAAAGAGGAGGCAAAGCCATTTTTCAGTTCTATCCAG
ACAGTCCCAGTCAGGTAATATAATATTAAAATatataccaaaaaaataat
gGTATAGCCAATTACAATTCTAAAGAGAATTGCTAAAAATGTCATAACAT
TCattttgacatttcaaaataataacattTCCTATCAGCGTTTGTTACAT
TGCTTTGCCACATTTGTTTTAATTCTACTTTTATTCTAAACTGCACGTGA
TCCCTAATTCTACTCTTACTCTTAGGTAGAACTAATAACATCACAAGCAA
TGCGTTCTGGTTTTTCTGGCGGTGTTGTTGTTGATTATCCCAACAGTACA
agagcaaaaaagtaaataattcTTTATCAGAATACTCTAaggttcttttt
tataagagcaaagtctttaatttttataaatatttatgATTGCTCTTTAC
TTCTTGTTGAGTTGAGTTAAACTCTCATTCATCAGAAGAGTGCTTGACCA
ATCGGAATCCGAAGCATATATATACTATTGTCGAATGAAGTTAATGTGTT
TTATTTCTAATTTATTGAATGTTTGTTAATGATTGTTCTTTATAAATCAA
TATAGAGagtactagacggttcccgtcgtcgccaacgccggttaacggtt
ttgcttgcacatcaaaagcctttaaaatacgataatgtgggttaattcct
gacatcgttttggcttaaaatgccgaatacaaTAATAAAAATTATACTTC
TAAACTTTCTACATTAGTCAAAAttttcccgtttgttggcttcacatgag
gacagcttaagaccggcgcatatgcaatgcaaccaacattgaaacctttt
taaataatgttacacaaagtttaatcatcaaacaacaatgttggattttg
ttgcgtgtgttgatataaaataattcgaaatcgtgcaacaaaaatgccac
acctgacgtcgcagtactttttcatgaaattgatgtcagaacttttttcg
tttacaaatagcagtgtagagtcttctctaatccgagttttctacgcttg
tcaaacttagcgcgagactttttgtatcgaaggtggataggttttccagc
cgcgacgttcaaattttagaaaccttaacatatgttactgggctagcgtt
acagacatttttcataaactcatttagtatagtaagattaTTTCTGTCAA
AGTAAAGCTTACCACTAGACCTAAATTTCCTTCAGTCTGATGATTGCCCT
CACTAAGTGAATAATTTCTGAATGATTTGCGTTcaacttttaattctttt
ttaatagTACTTTTACCTATGTGAGATGATGACAGTTTTTGTCTTCCTTT
TATTCCTTAGAATGTTTCTGGTTTTGTTTGCCGGAGTCAGTAATGCTGTC
TTACCTCAGGTATGCAATTATGCTTTTGtttatcaaacatttttttactG
GCTGCTTGATAATGGGCTGTAACTATGAgttaaattcaaaacattttaat
aATTTCTTGCCGTTCTTGcatattgattattttttgtgtttaGGCCTTGG
GAACAGAAGGAGCTGGAAATACTGTATCTTATACAACAAATAGGTATGTA
AGTCTTTCTatgatattttaaaatttattgtttttagaATATCGCCAAGT
TTTGTACTAGGTATGTACCAATGTTCTACTTCTTTTATTTAGAGAGAGAA
ATAATAACAGAAATGGTAGAGGGAAACCAtcaaagaaaagtaaagaatgg
attcaaaagaagaaagatcGGAAACGTAGACAAGGGAAAGAGTAAGAGAT
CACACTTTATTTGCTTATTGCTTTTTACCACACTCCCTTNAAAAGAGTAA
GAGATCACACTCTATTTGCTTATTGCTTTTTACCACACTCCCTTGAACCA
TTTGCTAGTCTTTTGATAAGATGATATTCCTTGCATTGTGACCAGAAATA
TCTGTCAATTGGAGATTTCTACCTTTAAGGTCCTGCCCTGTATTTATTAT
TGAATTCAGAATGAAGAAataatattcttaaaattttccatttcagTGTT
CGAGCTGATTCTAAGTATTCTggaagaaaaaggaaagttgCTTTTTGAGA
TTGGCTTACTTACAGTTGTCATATTGGGGCTTTGATCAACTGGTTTGAGT
GGTGTATAGTTTCCAATCGATTGAGTTGGTGATGTGGTAGAAATGCTCAG
TGTGTACCTTTACACAATACCAACAATACTTATCAATAAATTCTTTGATA
ATTTAGGATTTCATTAGATTTggcaaaaactgattttttactaaaaatga
aatttcttacCATCATTATTTTATTGGAAActctatttttattcaaaatt
ttgtttttatacaatGCCAAAGAAATTCATATCATCTTATACAAGATAAT
AtacaatttttgtaaacatgaCCAACACCTTGTGGGTGTATTTTGGTTTG
TTCTGCTATTATAAGCCATGAAATTATCAAACATGTTCATTAATATCATC
ATAATATCACTAGCATAATAAACACTTTGTGGAGTAGAACAAggatagaa
aattttttttcatagagtCTAGAGGTGCTGATGGATTCTCCTTGGAAGAC
TGAAAATTTCTCCCTTTCAATTTCGACTGAAAATTCCTTTTTGTGTACAG
ATAGTTTAACAAATTTCCATGACAACACATCACCAGGTGTTGTACTTACC
TGGTACAATAGTTTCTCttgaattttgtatttttttgagaGGAAAAGATC
TTTATAATACTGTTTATTGTGTCTCTCTCTGGCTCTACAAATATTCCAAT
TTTTATTAAGATTGTCGTCTGTAGCTTGAAACCTGCCATTAGAGTTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_032241	XLOC_032241	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:159076..164922 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.05116	1.67614	1.64089	1.1794	3.7041	1.44188	1.2699	1.48606	0.897707	0.818419	0.544348	1.20887	1.6536	1.98801	1.59522	0.840835	1.99896	1.61265	1.6367	0.584296	1.8309	2.7277	2.01732	1.06003	0.525695	1.7589	1.7707	1.36925	2.15245	1.51542

Blast

[Close]

BLAST of TCONS_00050875 vs. Swiss-Prot (Human)
Match: BUD23 (Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Homo sapiens GN=BUD23 PE=1 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 6.198e-83
Identity = 131/212 (61.79%), Postives = 170/212 (80.19%), Query Frame = 2

Query:  578 KRPELKAPPEVFYNDVEARKYTSNTRMIEIQNQMTXXXXXXXXXXXXXXCFLLDIGCGSGLSGEVLTEQGHYWVGFDISSSMLDIAKEREVEGDLLELDAGMGVPFRPGTFDGCISISALQWLCNVDKKWHNPVKRLHSFFTTLYTSLKRGGKAIFQFYPDSPSQVELITSQAMRSGFSGGVVVDYPNSTRAKKMFLVLFAGVSNAVLPQAL 1213
            +RPE   PPE+FY++ EARKY  N+RMI+IQ +M  RALELL LPE++PC+LLDIGCG+GLSG  L+++GHYWVG DIS +MLD A +RE+EGDLL  D G G+PF+PGTFDGCISISA+QWLCN +KK  NP KRL+ FF +L++ L RG +A+ Q YP++  Q+ELIT+QA ++GFSGG+VVDYPNS +AKK +L LF+G S   +P+ L
Sbjct:    6 RRPEHGGPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENKPCYLLDIGCGTGLSGSYLSDEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFDGCISISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELITTQATKAGFSGGMVVDYPNSAKAKKFYLCLFSGPS-TFIPEGL 216

The following BLAST results are available for this feature:

BLAST of TCONS_00050875 vs. Swiss-Prot (Human)

BLAST of TCONS_00050875 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
BUD23	6.198e-83	61.79	Probable 18S rRNA (guanine-N(7))-methyltransferase...	[more]

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TCONS_00050875 (transcript) - C. hemisphaerica