TCONS_00050286 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050286
Unique NameTCONS_00050286
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1086

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050286 ID=TCONS_00050286|Name=TCONS_00050286|organism=Clytia hemisphaerica|type=transcript|length=1086bp
CCCTTCTCTGCCAAAGACACAAATGTGTTTTCGCACAATTCTCAATTCAA
TACAAATCTCTCTTCAGATGCTACCTTTTTAACGATGTCGATGATGTCAT
CTCAAAGTTATCTGAGCGAAAGGGAAGTCAATTGTTCATGGTTTTCAACG
AGCCTGACTTGAGCCAGCAAGTTCAAAAACCTATGGACCACCATCTATCA
ACCACAACATCCAATCGATCAGAATGCTTAGATTGGTATGAGAAGGGCCA
CCACGGAAACGATGTCTACAGCCATATGATAGCTGGGAAAGCTACACAGG
CCTATTGTATCATGGAAGACCAAGCGGGTTATGGGGGCGGCTGGACGGCC
TTTCAGCGCCGGACCGATGCGCAAACACCCTTCTCTCAAGGAtgggaaaa
atacaaaaatggttTTGGTGAAGTTGGGAAAAACCATTGGCTAGGTCTCG
AACAAATCCACCGATTCACCAAAAGTCGGGCTACGACTGAATTATTGATA
TGTGGTAAGCGGTTCAATGGTGAAGAAAGATGCGCACATTTCGAAGGATT
CGCTGTCGGTGACGAAGCATCGGAATATAAATTGAAAAGTGGTTATCCAA
CGAATCTGGCATCCAGGAATCTCGGTAAAAGTTGGTCAGGTATGGATGGT
GTTCCATTCAGTACCTTGGATAGCGACAATGATTATCAATCAACAAATTG
TGCGGCTATATTCCCATCTGGTTGGTGGATGCGCAATTGTTTTGCGATCA
ATTTAAACGGCCTATATAGGGCTTCACCAGGGACTGTTACGCAATCAGCC
GTAGGTATCGTTTGGAATGAGTGGAGGGGTTATAAAGAATCGTTGAAAGA
GACAAAAATGTTGATGAGACGGAAAAAATGAAGTGAAATCAAACTTTGTT
CATTTTTGGTTAACCGATGCATTTAGTTGAAGTGGAGTGCGGCCTGACTG
GCTCGAGacgcctaaaagcctggagcttaAACGTTCTTCTCGGAGAAACA
AAAAAGGCAGGCAGTTTCCCAGCAGACAAATTCTTCCGCAAATTGAACAG
TTTGTTAATATATGTAAATAGTTATTCCACTACTTT
Run BLAST on NCBI

protein sequence of TCONS_00050286-protein

>TCONS_00050286-protein ID=TCONS_00050286-protein|Name=TCONS_00050286-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
LLCQRHKCVFAQFSIQYKSLFRCYLFNDVDDVISKLSERKGSQLFMVFNE
PDLSQQVQKPMDHHLSTTTSNRSECLDWYEKGHHGNDVYSHMIAGKATQA
YCIMEDQAGYGGGWTAFQRRTDAQTPFSQGWEKYKNGFGEVGKNHWLGLE
QIHRFTKSRATTELLICGKRFNGEERCAHFEGFAVGDEASEYKLKSGYPT
NLASRNLGKSWSGMDGVPFSTLDSDNDYQSTNCAAIFPSGWWMRNCFAIN
LNGLYRASPGTVTQSAVGIVWNEWRGYKESLKETKMLMRRKK
Run BLAST on NCBI

transcript from alignment at scaffold_168:68712..69797

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050286 ID=TCONS_00050286|Name=TCONS_00050286|organism=Clytia hemisphaerica|type=transcript|length=1086bp|location=Sequence derived from alignment at scaffold_168:68712..69797 (Clytia hemisphaerica)
AAAGTAGTGGAATAACTATTTACATATATTAACAAACTGTTCAATTTGCG
GAAGAATTTGTCTGCTGGGAAACTGCCTGCCTTTTTTGTTTCTCCGAGAA
GAACGTTtaagctccaggcttttaggcgtCTCGAGCCAGTCAGGCCGCAC
TCCACTTCAACTAAATGCATCGGTTAACCAAAAATGAACAAAGTTTGATT
TCACTTCATTTTTTCCGTCTCATCAACATTTTTGTCTCTTTCAACGATTC
TTTATAACCCCTCCACTCATTCCAAACGATACCTACGGCTGATTGCGTAA
CAGTCCCTGGTGAAGCCCTATATAGGCCGTTTAAATTGATCGCAAAACAA
TTGCGCATCCACCAACCAGATGGGAATATAGCCGCACAATTTGTTGATTG
ATAATCATTGTCGCTATCCAAGGTACTGAATGGAACACCATCCATACCTG
ACCAACTTTTACCGAGATTCCTGGATGCCAGATTCGTTGGATAACCACTT
TTCAATTTATATTCCGATGCTTCGTCACCGACAGCGAATCCTTCGAAATG
TGCGCATCTTTCTTCACCATTGAACCGCTTACCACATATCAATAATTCAG
TCGTAGCCCGACTTTTGGTGAATCGGTGGATTTGTTCGAGACCTAGCCAA
TGGTTTTTCCCAACTTCACCAAaaccatttttgtatttttcccaTCCTTG
AGAGAAGGGTGTTTGCGCATCGGTCCGGCGCTGAAAGGCCGTCCAGCCGC
CCCCATAACCCGCTTGGTCTTCCATGATACAATAGGCCTGTGTAGCTTTC
CCAGCTATCATATGGCTGTAGACATCGTTTCCGTGGTGGCCCTTCTCATA
CCAATCTAAGCATTCTGATCGATTGGATGTTGTGGTTGATAGATGGTGGT
CCATAGGTTTTTGAACTTGCTGGCTCAAGTCAGGCTCGTTGAAAACCATG
AACAATTGACTTCCCTTTCGCTCAGATAACTTTGAGATGACATCATCGAC
ATCGTTAAAAAGGTAGCATCTGAAGAGAGATTTGTATTGAATTGAGAATT
GTGCGAAAACACATTTGTGTCTTTGGCAGAGAAGGG

Coding sequence (CDS) from alignment at scaffold_168:68712..69797

>TCONS_00050286 ID=TCONS_00050286|Name=TCONS_00050286|organism=Clytia hemisphaerica|type=CDS|length=879bp|location=Sequence derived from alignment at scaffold_168:68712..69797 (Clytia hemisphaerica)
TCATTTTTTCCGTCTCATCAACATTTTTGTCTCTTTCAACGATTCTTTAT
AACCCCTCCACTCATTCCAAACGATACCTACGGCTGATTGCGTAACAGTC
CCTGGTGAAGCCCTATATAGGCCGTTTAAATTGATCGCAAAACAATTGCG
CATCCACCAACCAGATGGGAATATAGCCGCACAATTTGTTGATTGATAAT
CATTGTCGCTATCCAAGGTACTGAATGGAACACCATCCATACCTGACCAA
CTTTTACCGAGATTCCTGGATGCCAGATTCGTTGGATAACCACTTTTCAA
TTTATATTCCGATGCTTCGTCACCGACAGCGAATCCTTCGAAATGTGCGC
ATCTTTCTTCACCATTGAACCGCTTACCACATATCAATAATTCAGTCGTA
GCCCGACTTTTGGTGAATCGGTGGATTTGTTCGAGACCTAGCCAATGGTT
TTTCCCAACTTCACCAAaaccatttttgtatttttcccaTCCTTGAGAGA
AGGGTGTTTGCGCATCGGTCCGGCGCTGAAAGGCCGTCCAGCCGCCCCCA
TAACCCGCTTGGTCTTCCATGATACAATAGGCCTGTGTAGCTTTCCCAGC
TATCATATGGCTGTAGACATCGTTTCCGTGGTGGCCCTTCTCATACCAAT
CTAAGCATTCTGATCGATTGGATGTTGTGGTTGATAGATGGTGGTCCATA
GGTTTTTGAACTTGCTGGCTCAAGTCAGGCTCGTTGAAAACCATGAACAA
TTGACTTCCCTTTCGCTCAGATAACTTTGAGATGACATCATCGACATCGT
TAAAAAGGTAGCATCTGAAGAGAGATTTGTATTGAATTGAGAATTGTGCG
AAAACACATTTGTGTCTTTGGCAGAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031843XLOC_031843Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050286-proteinTCONS_00050286-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050286-exon-scaffold_168-1491911889:68712..69797TCONS_00050286-exon-scaffold_168-1491911889:68712..69797Clytia hemisphaericaexon
TCONS_00050286-exon-scaffold_168-1510915933:68712..69797TCONS_00050286-exon-scaffold_168-1510915933:68712..69797Clytia hemisphaericaexon
TCONS_00050286-exon-scaffold_168-1575043694:68712..69797TCONS_00050286-exon-scaffold_168-1575043694:68712..69797Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_168supercontigscaffold_168:68712..69797 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.161814	0.118346	1.19089	0.716986	0	0	0.104019	0.146072	6.23836	2.06904	4.26242	4.47234	0.0538087	0	0	0	0.880681	0.80929	0.129009	0.134999	0.938706	0.858503	0.0463832	0	0	0.271341	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014715Fibrinogen_a/b/g_C_2
IPR014716Fibrinogen_a/b/g_C_1
Blast
[Close]
BLAST of TCONS_00050286 vs. Swiss-Prot (Human)
Match: FBCD1 (Fibrinogen C domain-containing protein 1 OS=Homo sapiens GN=FIBCD1 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 8.084e-39
Identity = 97/273 (35.53%), Postives = 135/273 (49.45%), Query Frame = 3 
Query:   69 CYLFNDVDDVISKLSERKGSQLFMVFNEPDLSQQVQKPMDHHLSTTTSNRSECLDWYEKGHHGNDVYS----HMIAGKATQAYCIMEDQAGYGGGWTAFQRRTDAQTPFSQGWEKYKNGFGEVGKNHWLGLEQIHRFTKSRATTELLICGKRFNGEERCAHFEGFAVGDEASEYKLKSGYPTNLA--SRNLGKSWSGMDGVPFSTLDSDNDYQSTNCAAIFPSGWWMRNCFAINLNGLYRASPGTVTQSAVGIVWNEWRGYKESLKETKMLMR 869
             +L N V D++  L   +G  L    N+ DL +   +        T S   +CLD    G   + VYS    H  AG   Q YC M      GGGWT FQRR D    F +GW+ Y++GFG +   HWLGL++IH  T ++A  EL +  + F      A +  F VG  + + + + GYP  +A  S   G S     G+ F+T D D+D+   NCAA +   WW RNC   NLNG Y    G     A G+ W+ W G++ SLK ++M +R
Sbjct:  194 AHLVNSVSDILDALQRDRG--LGRPRNKADLQRAPARGTRPRGCATGSRPRDCLDVLLSGQQDDGVYSVFPTHYPAG--FQVYCDMRTD---GGGWTVFQRREDGSVNFFRGWDAYRDGFGRLTGEHWLGLKRIHALT-TQAAYELHVDLEDFENGTAYARYGSFGVGLFSVDPE-EDGYPLTVADYSGTAGDSLLKHSGMRFTTKDRDSDHSENNCAAFYRGAWWYRNCHTSNLNGQYLR--GAHASYADGVEWSSWTGWQYSLKFSEMKIR 455
The following BLAST results are available for this feature:
BLAST of TCONS_00050286 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBCD18.084e-3935.53Fibrinogen C domain-containing protein 1 OS=Homo s... [more]
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