TCONS_00049346 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049346
Unique NameTCONS_00049346
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1628

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049346 ID=TCONS_00049346|Name=TCONS_00049346|organism=Clytia hemisphaerica|type=transcript|length=1628bp
tttcagatACAATAagtaaaaattaagaaaaaagagAAGAGAACTGAAAA
TGGATTATGAAATGGAAAACATTGTAAATATATCAAATAATGATGGATTT
GAATCACCAATCAAGTTATCATTCGATATAAACAACGATGGTAACTTCAT
TGGTTCTTGTCAAATTACCATCGAAACTATAAAGTCGAGATTGGAATTCG
TGGATCGTCTTGGGaatagttttttgtttaaacCGAACAAAGAAGAGGAA
AGCCCAAGACCAAAAgctgattttaagaaaaacaatcgTCTAGGGTTGGG
TGAGGAAATTGAGGTAGAATGGGAGGTCGATGAACAAATTTATAAGTTAG
CTTTACGCGAGGAGGAAGATGTTGAACCTGACGATGAAAATGTTTACCTT
AGTAACGACATTGTTAAAGTCGAAGAGTTCAAGAAATCCAAGCACAAACA
AAAACCCAAGCGTCTAAAGAACAAGGTTGACCATGATACTAAAAAAGTTA
ACCTCGATAATGCAGAAAATGGTCAAATCGAAGAGTCTAAGGAATCAAAT
TTTGAATGTCGTgtgtgtggtaaatcttttacACGAAAAAGCTCTCGTAC
TCAGCACGAGAACGGTCATAATCGCGAACCAAAAGTGTtcaaatgtcaag
aatgtggtaaggAACTTGCGTCAAAAAGTAAATTAAACATTCACATTAAA
ACCCATACTGGTGAAAAGCCTTTTgagtgtcaagaatgtggtaaggAACT
TGCGTCAAAAAGTAAATTAAACATTCACATTAAAACCCATACTGGTGAAA
AGCCTTTTGAGTGTCAGGAATGTGGTAAACGGTTTGTGCGAAAAGATAAT
CTTAAAGATCACGTGAAGTTGCATTCTGATGACAAGCCATTCAAATGTAA
AATATGTATCAAGTCATATGTAAGGAACTACGATTTGAAAAGACACATGG
CAACTCACACAGACGATAAATCGTTTTATTGTGAGTTATGTGGGAAGGGG
TTTGCAGAAGAAAACCATCTCCAAGATCATATCGCACGACATTCTATGGA
TAGACCATTTAAATGTCAAGTATGTGGTAAAGCATTTCCTCGAAATTATG
ACTTGACAAAACACTCAAAAACACACACAGAtgagaagcctttcaagtgt
gaGTTATGTGGGAAAGAATTTCGAAATAGTGATACTCTCAGAAACCACCT
CATTATCCATACCGATGAAAAGGCTTTTGAGTGTGACGTTTGTGGAAAGG
CTCTTTCAAATCTAAGAACCCTTAAACGGCATATTCAAATGACACACCTT
AATGATactgtaaaatcaaaagaaacatCTGAATAAAGTCCTTTCTGTTA
TTATTTTCATATATAAGTTTTTATATTCGTTTATCATAATGctttttttc
agatatttttgtATATAAGTTCAAAGCTAAATATTTTTAGATTAAATACC
TTCAAACAATTTTAAAGTAAGAACAATATATACCATTTGCCTTAATAAGT
ATAATTTACCAACGCCAGTGCTTACAGTGCTTATAAATATCTTTCTAACG
ATTTGTAAGAATTCTTAGTACTAAACATTCGAAGTTTCCAAGGGAAAAAC
TTCACACTCTCAAAATATACAATACCAc
Run BLAST on NCBI

protein sequence of TCONS_00049346-protein

>TCONS_00049346-protein ID=TCONS_00049346-protein|Name=TCONS_00049346-protein|organism=Clytia hemisphaerica|type=polypeptide|length=428bp
MDYEMENIVNISNNDGFESPIKLSFDINNDGNFIGSCQITIETIKSRLEF
VDRLGNSFLFKPNKEEESPRPKADFKKNNRLGLGEEIEVEWEVDEQIYKL
ALREEEDVEPDDENVYLSNDIVKVEEFKKSKHKQKPKRLKNKVDHDTKKV
NLDNAENGQIEESKESNFECRVCGKSFTRKSSRTQHENGHNREPKVFKCQ
ECGKELASKSKLNIHIKTHTGEKPFECQECGKELASKSKLNIHIKTHTGE
KPFECQECGKRFVRKDNLKDHVKLHSDDKPFKCKICIKSYVRNYDLKRHM
ATHTDDKSFYCELCGKGFAEENHLQDHIARHSMDRPFKCQVCGKAFPRNY
DLTKHSKTHTDEKPFKCELCGKEFRNSDTLRNHLIIHTDEKAFECDVCGK
ALSNLRTLKRHIQMTHLNDTVKSKETSE
Run BLAST on NCBI

transcript from alignment at scaffold_154:805811..807438

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049346 ID=TCONS_00049346|Name=TCONS_00049346|organism=Clytia hemisphaerica|type=transcript|length=1628bp|location=Sequence derived from alignment at scaffold_154:805811..807438 (Clytia hemisphaerica)
gTGGTATTGTATATTTTGAGAGTGTGAAGTTTTTCCCTTGGAAACTTCGA
ATGTTTAGTACTAAGAATTCTTACAAATCGTTAGAAAGATATTTATAAGC
ACTGTAAGCACTGGCGTTGGTAAATTATACTTATTAAGGCAAATGGTATA
TATTGTTCTTACTTTAAAATTGTTTGAAGGTATTTAATCTAAAAATATTT
AGCTTTGAACTTATATacaaaaatatctgaaaaaaagCATTATGATAAAC
GAATATAAAAACTTATATATGAAAATAATAACAGAAAGGACTTTATTCAG
atgtttcttttgattttacagtATCATTAAGGTGTGTCATTTGAATATGC
CGTTTAAGGGTTCTTAGATTTGAAAGAGCCTTTCCACAAACGTCACACTC
AAAAGCCTTTTCATCGGTATGGATAATGAGGTGGTTTCTGAGAGTATCAC
TATTTCGAAATTCTTTCCCACATAACtcacacttgaaaggcttctcaTCT
GTGTGTGTTTTTGAGTGTTTTGTCAAGTCATAATTTCGAGGAAATGCTTT
ACCACATACTTGACATTTAAATGGTCTATCCATAGAATGTCGTGCGATAT
GATCTTGGAGATGGTTTTCTTCTGCAAACCCCTTCCCACATAACTCACAA
TAAAACGATTTATCGTCTGTGTGAGTTGCCATGTGTCTTTTCAAATCGTA
GTTCCTTACATATGACTTGATACATATTTTACATTTGAATGGCTTGTCAT
CAGAATGCAACTTCACGTGATCTTTAAGATTATCTTTTCGCACAAACCGT
TTACCACATTCCTGACACTCAAAAGGCTTTTCACCAGTATGGGTTTTAAT
GTGAATGTTTAATTTACTTTTTGACGCAAGTTccttaccacattcttgac
actcAAAAGGCTTTTCACCAGTATGGGTTTTAATGTGAATGTTTAATTTA
CTTTTTGACGCAAGTTccttaccacattcttgacatttgaACACTTTTGG
TTCGCGATTATGACCGTTCTCGTGCTGAGTACGAGAGCTTTTTCGTgtaa
aagatttaccacacacACGACATTCAAAATTTGATTCCTTAGACTCTTCG
ATTTGACCATTTTCTGCATTATCGAGGTTAACTTTTTTAGTATCATGGTC
AACCTTGTTCTTTAGACGCTTGGGTTTTTGTTTGTGCTTGGATTTCTTGA
ACTCTTCGACTTTAACAATGTCGTTACTAAGGTAAACATTTTCATCGTCA
GGTTCAACATCTTCCTCCTCGCGTAAAGCTAACTTATAAATTTGTTCATC
GACCTCCCATTCTACCTCAATTTCCTCACCCAACCCTAGAcgattgtttt
tcttaaaatcagcTTTTGGTCTTGGGCTTTCCTCTTCTTTGTTCGgttta
aacaaaaaactattCCCAAGACGATCCACGAATTCCAATCTCGACTTTAT
AGTTTCGATGGTAATTTGACAAGAACCAATGAAGTTACCATCGTTGTTTA
TATCGAATGATAACTTGATTGGTGATTCAAATCCATCATTATTTGATATA
TTTACAATGTTTTCCATTTCATAATCCATTTTCAGTTCTCTTctcttttt
tcttaatttttactTATTGTatctgaaa

Coding sequence (CDS) from alignment at scaffold_154:805811..807438

>TCONS_00049346 ID=TCONS_00049346|Name=TCONS_00049346|organism=Clytia hemisphaerica|type=CDS|length=1287bp|location=Sequence derived from alignment at scaffold_154:805811..807438 (Clytia hemisphaerica)
TTATTCAGatgtttcttttgattttacagtATCATTAAGGTGTGTCATTT
GAATATGCCGTTTAAGGGTTCTTAGATTTGAAAGAGCCTTTCCACAAACG
TCACACTCAAAAGCCTTTTCATCGGTATGGATAATGAGGTGGTTTCTGAG
AGTATCACTATTTCGAAATTCTTTCCCACATAACtcacacttgaaaggct
tctcaTCTGTGTGTGTTTTTGAGTGTTTTGTCAAGTCATAATTTCGAGGA
AATGCTTTACCACATACTTGACATTTAAATGGTCTATCCATAGAATGTCG
TGCGATATGATCTTGGAGATGGTTTTCTTCTGCAAACCCCTTCCCACATA
ACTCACAATAAAACGATTTATCGTCTGTGTGAGTTGCCATGTGTCTTTTC
AAATCGTAGTTCCTTACATATGACTTGATACATATTTTACATTTGAATGG
CTTGTCATCAGAATGCAACTTCACGTGATCTTTAAGATTATCTTTTCGCA
CAAACCGTTTACCACATTCCTGACACTCAAAAGGCTTTTCACCAGTATGG
GTTTTAATGTGAATGTTTAATTTACTTTTTGACGCAAGTTccttaccaca
ttcttgacactcAAAAGGCTTTTCACCAGTATGGGTTTTAATGTGAATGT
TTAATTTACTTTTTGACGCAAGTTccttaccacattcttgacatttgaAC
ACTTTTGGTTCGCGATTATGACCGTTCTCGTGCTGAGTACGAGAGCTTTT
TCGTgtaaaagatttaccacacacACGACATTCAAAATTTGATTCCTTAG
ACTCTTCGATTTGACCATTTTCTGCATTATCGAGGTTAACTTTTTTAGTA
TCATGGTCAACCTTGTTCTTTAGACGCTTGGGTTTTTGTTTGTGCTTGGA
TTTCTTGAACTCTTCGACTTTAACAATGTCGTTACTAAGGTAAACATTTT
CATCGTCAGGTTCAACATCTTCCTCCTCGCGTAAAGCTAACTTATAAATT
TGTTCATCGACCTCCCATTCTACCTCAATTTCCTCACCCAACCCTAGAcg
attgtttttcttaaaatcagcTTTTGGTCTTGGGCTTTCCTCTTCTTTGT
TCGgtttaaacaaaaaactattCCCAAGACGATCCACGAATTCCAATCTC
GACTTTATAGTTTCGATGGTAATTTGACAAGAACCAATGAAGTTACCATC
GTTGTTTATATCGAATGATAACTTGATTGGTGATTCAAATCCATCATTAT
TTGATATATTTACAATGTTTTCCATTTCATAATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031317XLOC_031317Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049346-proteinTCONS_00049346-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049346-exon-scaffold_154-1491911889:805811..807438TCONS_00049346-exon-scaffold_154-1491911889:805811..807438Clytia hemisphaericaexon
TCONS_00049346-exon-scaffold_154-1510915933:805811..807438TCONS_00049346-exon-scaffold_154-1510915933:805811..807438Clytia hemisphaericaexon
TCONS_00049346-exon-scaffold_154-1575043694:805811..807438TCONS_00049346-exon-scaffold_154-1575043694:805811..807438Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:805811..807438 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.4688	19.9126	9.13677	5.61768	3.57395	3.11726	4.37157	4.69447	2.22385	1.93534	2.48237	1.23218	1.67943	1.48508	2.49866	2.99366	4.16207	5.19412	1.90326	0.945593	1.93386	1.784	24.6752	19.081	5.07342	5.77367	2.22837	3.10992	11.7446	13.6472
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
IPR022755Znf_C2H2_jaz
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00049346 vs. Swiss-Prot (Human)
Match: OZF (Zinc finger protein OZF OS=Homo sapiens GN=ZNF146 PE=1 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 7.478e-71
Identity = 118/252 (46.83%), Postives = 157/252 (62.30%), Query Frame = 2 
Query:  536 SKESNFECRVCGKSFTRKSSRTQHENGHNREPKVFKCQECGKELASKSKLNIHIKTHTGEKPFECQECGKELASKSKLNIHIKTHTGEKPFECQECGKRFVRKDNLKDHVKLHSDDKPFKCKICIKSYVRNYDLKRHMATHTDDKSFYCELCGKGFAEENHLQDHIARHSMDRPFKCQVCGKAFPRNYDLTKHSKTHTDEKPFKCELCGKEFRNSDTLRNHLIIHTDEKAFECDVCGKALSNLRTLKRHIQM 1291
            ++E  FEC  CGK+F++K    +H+N H  E K+F+C ECGK  + K  L  H K HTGEKPFEC++CGK    KS L  H +THTGEKPF C+ECGK F  K NL +H K+H  +KPFKC  C  ++ +   L +H   HT +K + C  CGK F++   L  H+  HS D+P++C VCGKAF ++  LT H ++HT EKP+ C  CGK F    TL  HL IHT +K ++C  CGKA S      RH ++
Sbjct:   39 TREKPFECNECGKAFSQKQYVIKHQNTHTGE-KLFECNECGKSFSQKENLLTHQKIHTGEKPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQFSTLALHLRIHTGKKPYQCSECGKAFSQKSHHIRHQKI 289

HSP 2 Score: 226.483 bits (576), Expect = 8.072e-69
Identity = 113/252 (44.84%), Postives = 156/252 (61.90%), Query Frame = 2 
Query:  536 SKESNFECRVCGKSFTRKSSRTQHENGHNREPKVFKCQECGKELASKSKLNIHIKTHTGEKPFECQECGKELASKSKLNIHIKTHTGEKPFECQECGKRFVRKDNLKDHVKLHSDDKPFKCKICIKSYVRNYDLKRHMATHTDDKSFYCELCGKGFAEENHLQDHIARHSMDRPFKCQVCGKAFPRNYDLTKHSKTHTDEKPFKCELCGKEFRNSDTLRNHLIIHTDEKAFECDVCGKALSNLRTLKRHIQM 1291
            S E+ F C+VCGK F+ KS+ T+HE+ H RE K F+C ECGK  + K  +  H  THTGEK FEC ECGK  + K  L  H K HTGEKPFEC++CGK F++K NL  H + H+ +KPF CK C K++    +L  H   H  +K F C  CG  F ++ +L  H   H+ ++P++C  CGKAF +   L  H + H+ +KP++C +CGK F  S +L  H+  HT EK + C+ CGKA S   TL  H+++
Sbjct:   11 SGENPFACKVCGKVFSHKSNLTEHEHFHTRE-KPFECNECGKAFSQKQYVIKHQNTHTGEKLFECNECGKSFSQKENLLTHQKIHTGEKPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQFSTLALHLRI 261

HSP 3 Score: 187.578 bits (475), Expect = 3.472e-54
Identity = 97/230 (42.17%), Postives = 135/230 (58.70%), Query Frame = 2 
Query:  524 QIEESKESNFECRVCGKSFTRKSSRTQHENGHNREPKVFKCQECGKELASKSKLNIHIKTHTGEKPFECQECGKELASKSKLNIHIKTHTGEKPFECQECGKRFVRKDNLKDHVKLHSDDKPFKCKICIKSYVRNYDLKRHMATHTDDKSFYCELCGKGFAEENHLQDHIARHSMDRPFKCQVCGKAFPRNYDLTKHSKTHTDEKPFKCELCGKEFRNSDTLRNHLIIHT 1213
            Q   + E  FEC  CGKSF++K +   H+  H  E K F+C++CGK    KS L  H +THTGEKPF C+ECGK  + KS L  H K H GEKPF+C ECG  F +K  L  H  +H+ +KP++C  C K++ +   L  H+  H+ DK + C +CGK F++ + L  H+  H+ ++P+ C  CGKAF +   L  H + HT +KP++C  CGK F        H  IHT
Sbjct:   63 QNTHTGEKLFECNECGKSFSQKENLLTHQKIHTGE-KPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQFSTLALHLRIHTGKKPYQCSECGKAFSQKSHHIRHQKIHT 291
The following BLAST results are available for this feature:
BLAST of TCONS_00049346 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OZF7.478e-7146.83Zinc finger protein OZF OS=Homo sapiens GN=ZNF146 ... [more]
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