|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048926 ID=TCONS_00048926|Name=TCONS_00048926|organism=Clytia hemisphaerica|type=transcript|length=2115bpRun BLAST on NCBI transcript from alignment at scaffold_148:207125..214623- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048926 ID=TCONS_00048926|Name=TCONS_00048926|organism=Clytia hemisphaerica|type=transcript|length=7499bp|location=Sequence derived from alignment at scaffold_148:207125..214623- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00048926 vs. Swiss-Prot (Human)
Match: LMBL3 (Lethal(3)malignant brain tumor-like protein 3 OS=Homo sapiens GN=L3MBTL3 PE=1 SV=2) HSP 1 Score: 382.874 bits (982), Expect = 1.112e-120 Identity = 210/563 (37.30%), Postives = 309/563 (54.88%), Query Frame = 2
Query: 305 GFCWETYLQITATKSVPVEAFFKEYDEQEILPQSTTNQFEQGMKLECIDPKHQSIICCCTVVEVQGARLRLNFDGWPANYDFWINSNSFFLHPCGWCSKNQQKLQPPKDIDPKDFEWSTYLMKTQSKAAPANLFFD-TPPVSRHAFRISMKLEAIDRKNPDLVCVASVANTIGDQILIHFDEWDDLYDYWCREDNPYIHPMGWCQKNQIALV-PPTDEMVGKFVWKDYLNDSDCIAAPDEVFKEPKKLLFVIGDKMEVIDPRNPTLCRVATVNRAEDFKVQIHFDGWPSMYDWWFDFDSMDLHPVGWCQKTGHVLEPPPSGQDATSP-----CGIQGCRGVGHIKGAKYTTHHTSFGCPYTSQNIHRTTSPVVDRLVMDSEEVFAGSTPSNKSNENSPTSTVFPDSTTNYXXXXXXXXXXXXXXXXXXXXXXXXXXDEVSSSTNFLHEERITKHEYSPMDIPKKIRST---HIPAGLYGRNTYFERKSQAIP------------WNTQEVGEFLSRI-GYAEYVPIFKDNQIDGQALLLLSQADLVHHLNLKLGPALKIYSEI 1924
+CW +YL+ +VP + F E + P + N F+ GMKLE +DP+HQS+ C TV EV G R++L+FDG+ YDFW+N+++ +HP GWC K KL PPK ++F W TYL +++AAP +LF + V FR+ MKLEA+D+KNP +CVA+V + + ++ L+HFD WD+ YDYWC +P+IHP+GWC++++ L+ PP V F W YL +++ + AP FK F K+EV+D RNP RVATV +D +V++HFDGW + YD+W D DS D+HPVGWC KTGH L+PP S + C GC+G+GH K A++ H++ CPY+ N+++ DR+ P S E P S FP N + + + K + S HE R + E P + RS + + +E++S+ +P W+T EV EF+ + G E+ +FKD QIDG+A LL++Q D+V +++KLGPALKI++ I
Sbjct: 231 AWCWASYLEEEKAVAVPAKLF----KEHQSFPYNK-NGFKVGMKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSDCYDFWVNADALDIHPVGWCEKTGHKLHPPKGYKEEEFNWQTYLKTCKAQAAPKSLFENQNITVIPSGFRVGMKLEAVDKKNPSFICVATVTDMVDNRFLVHFDNWDESYDYWCEASSPHIHPVGWCKEHRRTLITPPGYPNVKHFSWDKYLEETNSLPAPARAFKVKPPHGFQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVGWCSKTGHPLQPPLSPLELMEASEHGGCSTPGCKGIGHFKRARHLGPHSAANCPYSEINLNK------DRIF-----------PDRLSGEMPPASPSFP---RNKRTDANESSSSPEIRDQHADDVKEDFEERTESEMRTSHEARGAREE--PTVQQAQRRSAVFLSFKSPIPCLPLRWEQQSKLLPTVAGIPASKVSKWSTDEVSEFIQSLPGCEEHGKVFKDEQIDGEAFLLMTQTDIVKIMSIKLGPALKIFNSI 766 The following BLAST results are available for this feature:
BLAST of TCONS_00048926 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
