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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048896 ID=TCONS_00048896|Name=TCONS_00048896|organism=Clytia hemisphaerica|type=transcript|length=4155bpRun BLAST on NCBI transcript from alignment at scaffold_148:91216..114802- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048896 ID=TCONS_00048896|Name=TCONS_00048896|organism=Clytia hemisphaerica|type=transcript|length=23587bp|location=Sequence derived from alignment at scaffold_148:91216..114802- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00048896 vs. Swiss-Prot (Human)
Match: MEGF8 (Multiple epidermal growth factor-like domains protein 8 OS=Homo sapiens GN=MEGF8 PE=1 SV=2) HSP 1 Score: 436.032 bits (1120), Expect = 5.687e-126 Identity = 326/1157 (28.18%), Postives = 501/1157 (43.30%), Query Frame = 2
Query: 2 NFTSSTWKQVPLKKSFDLDVRLSGHTCT-KVELFVYLIGGYAPSDGLSEFVYYIDLASHRINVIKFNDLEPVGIYLHVAIYDKETDYIYLHGGVSFYDDEIKPSNQMYAFR---------------------------------PGNDP-TWNYIE---------------ALPDDTVPTL------VGHAAIKREEDIYVLSGYDDLLGFNKEVYVWKFHCNRWFKYENENVTDTFDGLASIFASVTLDNNNTFYVFTGYQPLSINGGELFSLLLPNKPCSLFDGLQTGCLKSFGCRWCPANQSCADQS--VPCENSTLSQQCNLNTMHSRGCDTFSTCSTCLSKYAQ---------NNDRCHWC-KCGKGAERVCLSNNQPCP----CALSQGLSANMSIVECHKGPCYTSTCMNC--HNQCFWGTHFQYITETDRRYDDKGNLPYNCFTKVLVDHVVSHPGYLKVKDQSEGQCPATCDTFKTCTACIASRGDLSGSTTCVWSEKLSQCMSTAILPLYCPIARCGSVSSTTCPVKGVCSRQQDCASCSQYTNCGWCSKGDQ-GYGTCMEGDFLEPFNEI-CGSGLSSNGRVVDSGNSANYTWAYMQCPLENECTNGHSNCTKSEVCRDLIEGYQCTCKVGYK--RVKGLCEPVCDPECENGECVTPNQCHCSFGWTGQQCNVSCMCNGHSNCLNETFPDVCLACQNDTQGAQCTRCKPLFVGSPRDGGSCQTCQHFCNGNSDICL--YQTQQQEVERLGISNNRSALLEWITENVGDGPKFPSEAVCLMCGKLSSGETCDECVEGYY-KDKKSNVCVKCNCNGHGNVCN-KDGLDCQCLHNTRSNT------ACEVDCQNDQCSKCIEKDDYIGNPVSGNQCYKRINAK-------SSETVTLS-------GSNKLAFFAVAPSFTNVNIRINIDVLQGSLELFIADENQIFKLEMNGTQPRLTITRDTNRARRSMEASTNFLPS----------------------RSAFKDRITTFENF--ETDILWIYNIEKRVVIKIDHTQHNLRTKKFYFVLLPT------NKTGSDTTKFHVYFRQDLPRIDXXXXXXXXXXXXXXXXXXXXXXMKVRIDFIRNTQNQIQQLEMNAMQSRPLASYPLLFTKDDQKPHHA 3076
N T+ W+Q ++ +L ++GHT T + L + L+GGY+P +G ++ + LA+ + P G+Y H A+Y + TD +Y+ GG F+ + PS ++Y+ PG P +W + E ++ P L + HA+ + + VL G D F+ +V +++ +CN W + + A + Y+ G+ +++ G L +L LP PC L + C +S C WC DQ+ + C S C+ C TCS CL+++ + + RC WC C +GA C+ N C C ++Q C + C + C C +C W F+ ET R + + CF+ L++ VS + V+ CP C CT+C+ S+G G CVWS L QC+S + LPL C CG + C++ CA C + +CGWC+ G Q G G CMEG P + + CG +WA++ CP E+EC NGH +C +++ C D GY+C+CK GY + GLC PVC C NG CV P+ C C FG+ G+ C+ C CN HS C D CL C+N T+G+ C +C PLFVGS GG+C+ C FC GNS IC+ + Q + E S + + W+TE + EAVC+ C S GE C+ C++GY+ D K C KC CNGH + CN +DG C C +NT + T + DC QC+KC ++ + G+P+ G QCY+ I+ + +S+T G + F V P FTNV+IR+ +DV G+++L+++ F + + T+ A + P R + + T+ + +L + + R+VI H H L++ +FY +LL GS ++ ++FRQD IDL +FF V LS ++ K + + + + EM M SRP A + F D P A
Sbjct: 1600 NLTTLQWRQEKAPQTVELPA-VAGHTLTARRGLSLLLVGGYSPENGFNQQLLEYQLATGTWVSGAQSGTPPTGLYGHSAVYHEATDSLYVFGGFRFHVELAAPSPELYSLHCPDRTWSLLAPSQGAKRDRMRNVRGSSRGLGQVPGEQPGSWGFREVRKKMALWAALAGTGGFLEEISPHLKEPRPRLFHASALLGDTMVVLGGRSDPDEFSSDVLLYQVNCNAWLLPDLTRSASVGPPMEESVAHAVAAVGSRLYISGGFGGVAL--GRLLALTLPPDPCRLLSSPEA-CNQSGACTWCHGACLSGDQAHRLGCGGSP----CSPMPRSPEECRRLRTCSECLARHPRTLQPGDGEASTPRCKWCTNCPEGA---CIGRNGSCTSENDCRINQ--REVFWAGNCSEAACGAADCEQCTREGKCMWTRQFKRTGETRRILSVQPTYDWTCFSHSLLN--VSP---MPVESSPPLPCPTPCHLLPNCTSCLDSKGADGGWQHCVWSSSLQQCLSPSYLPLRCMAGGCGRLLRGPESCSLGCAQATQCALCLRRPHCGWCAWGGQDGGGRCMEGGLSGPRDGLTCGR--------------PGASWAFLSCPPEDECANGHHDCNETQNCHDQPHGYECSCKTGYTMDNMTGLCRPVCAQGCVNGSCVEPDHCRCHFGFVGRNCSTECRCNRHSECAGVGARDHCLLCRNHTKGSHCEQCLPLFVGSAVGGGTCRPCHAFCRGNSHICISRKELQMSKGEPKKYSLDPEEIENWVTEGPSE-----DEAVCVNCQNNSYGEKCESCLQGYFLLDGK---CTKCQCNGHADTCNEQDGTGCPCQNNTETGTCQGSSPSDRRDCYKYQCAKC--RESFHGSPLGGQQCYRLISVEQECCLDPTSQTNCFHEPKRRALGPGRTVLFGVQPKFTNVDIRLTLDVTFGAVDLYVSTSYDTFVVRVAPDTGVHTVHIQPPPAPPPPPPPADGGPRGAGDPGGAGASSGPGAPAEPRVREVWPRGLITYVTVTEPSAVLVVRGVRDRLVITYPHEHHALKSSRFYLLLLGVGDPSGPGANGSADSQGLLFFRQDQAHIDLFVFFSVFFSCFFLFLSLCVLLWKAKQALDQRQEQRRHLQEMTKMASRPFAKVTVCFPPDPTAPASA 2714 HSP 2 Score: 98.9821 bits (245), Expect = 1.548e-20 Identity = 107/390 (27.44%), Postives = 142/390 (36.41%), Query Frame = 2
Query: 1148 DHVVSHPGYLKVKDQSEGQCPATCDTFKTCTACIASRGDLSGSTTCVWSEKLSQCMSTAILPLYCPIARC----GSVSSTTCPVKGVCSRQQDCASCSQYTNCGWCSKGDQG-YGTCMEGDFLEPFNEICGSGLSSNGRVVDSGNSANYTWAYMQCPLENECTNGHSNCTKSEVCRDLIEGYQCTCKVGYKRVKGL--CEPVCDPECENGECVTPNQ--CHCSFGWTGQ-------------QCNVSCMCNGHSNCLNETFPDVCLACQNDTQGAQCTRCKPLFVGSPRDGGSCQTCQHFCNGNSDICLYQTQQQEVERLGISNNRSALLEWITENVGDGPKFPSEAVCLMCGKLSSGETCDECVEGYYKDKKSNVCVKCNCNGHGNVCN 2251
D S G + +S +CP C TC C+A+ S+ C W + C A P C SV S P C C C Q CGWC D G C++GDF P S G + A WAY +CP +EC G + C C + Y+C C+ GY+ G+ C C +C +G C P C C GWT +C+ C C+ HS+C + P C CQ+ T G C RC+P G+ C+ CQ CNG+ D R G +N S L C + G C C GYY D ++ C G + N
Sbjct: 927 DAACSRRGRGRGALKSPEECPPLCSQRLTCEDCLAN------SSQCAWCQSTHTCFLFAAYLARYPHGGCRGWDDSVHSE--PRCRSCDGFLTCHECLQSHECGWCGNEDNPTLGRCLQGDFSGPLGGGNCSLWVGEGLGLPVALPAR--WAYARCPDVDECRLGLARCHPRATCLNTPLSYECHCQRGYQG-DGISHCNRTCLEDCGHGVCSGPPDFTCVCDLGWTSDLPPPTPAPGPPAPRCSRDCGCSFHSHC-RKRGPGFCDECQDWTWGEHCERCRPGSFGNATGSRGCRPCQ--CNGHGD-----------PRRGHCDNLSGL--------------------CFCQDHTEGAHCQLCSPGYYGDPRAGGSCFRECGGRALLTN 1271 The following BLAST results are available for this feature:
BLAST of TCONS_00048896 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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