TCONS_00048850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048850
Unique NameTCONS_00048850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1092

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048850 ID=TCONS_00048850|Name=TCONS_00048850|organism=Clytia hemisphaerica|type=transcript|length=1092bp
CCCCCTTGTTTCAGGTTACAGTCTCTTTTTATATCTTCGGATAATTTTTG
TGGATTTATTTCAAGTGACTCCTTTACGGAGgtcagacagacagacagaa
aaatgaagattcttAATATTCTAATAATTTTAGTTAATTACTTGGTGGTT
AGCACCAATGCGAATTGTGATCTCGATCTTGGTTTCATTATCGATGAATC
TGGCTCCATCACCAGtacagatttcaaaaaatccatcGACTTCGTCAAAT
CAGTAACACAACAATTTAACGTTGATACATACAAGACTAGAGTATCAATT
ATAACTTTCTCAAATGATGCTGTTCAACATTTTGCATTCCGAGATTGGTA
TGGATACAGTCGACAAGGCTTGGATTATTATCTACCACGAATCCGCCAAC
GAGGTGGGGGAACGTACACGAACAAAGCGTTGGATTTGGCACGAACCAAA
ATGTACACCCTGAATAGCGGTGAACGACACGATAAAGTCAACGTCCTTGT
GGTGATTTCAGACGGAAAGAGCCAATCAGGAAGTAGTGTTTTAAAAGCTG
CAGCTGATACATTACGTAattctggtgtcaacattctGGCAGTTGGAGTT
GGTTCAGGAATCAATAACAATGAATTGAACATCATCTCTGGAAGTTACTC
CAATATTTTCAGTGTTACAAATGCGTATTATTTGACCTCAATCGTTTCCA
AAATCAAGTCTGTCAGTTGCAAAGCTGTGACATGTCATTACAAGGATTGT
CATTATCGAAGTTGGAGTAGTTGGTCTGCAACATGTGGTCAAGCTACTCG
AACACGATCATTTTATTATTCTTCGAGTAGAAGCAAAACACAAGTCAGTG
GATGTGCTGGATTGAGAACAACTTGTCAATCAAAAGAATCAGAAACTAAA
CAACTAGCTGCATGTCCATTATATTCATCAGCACGATGCACAGTCAAGAA
TTGTTATTACTACAGCTGGAGTAGCTGGTCTGCGTCCTGTGGAAGTGTTT
CCCGTTCACGACGTTATTATTACTCGTCAAGCTCTACAGTAACCGTCGCA
TCTTCAAGCCAATGTGCACAATACAAAACATCATGTGAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00048850-protein

>TCONS_00048850-protein ID=TCONS_00048850-protein|Name=TCONS_00048850-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp
PPCFRLQSLFISSDNFCGFISSDSFTEVRQTDRKMKILNILIILVNYLVV
STNANCDLDLGFIIDESGSITSTDFKKSIDFVKSVTQQFNVDTYKTRVSI
ITFSNDAVQHFAFRDWYGYSRQGLDYYLPRIRQRGGGTYTNKALDLARTK
MYTLNSGERHDKVNVLVVISDGKSQSGSSVLKAAADTLRNSGVNILAVGV
GSGINNNELNIISGSYSNIFSVTNAYYLTSIVSKIKSVSCKAVTCHYKDC
HYRSWSSWSATCGQATRTRSFYYSSSRSKTQVSGCAGLRTTCQSKESETK
QLAACPLYSSARCTVKNCYYYSWSSWSASCGSVSRSRRYYYSSSSTVTVA
SSSQCAQYKTSCEN
Run BLAST on NCBI

transcript from alignment at scaffold_147:154445..162869-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048850 ID=TCONS_00048850|Name=TCONS_00048850|organism=Clytia hemisphaerica|type=transcript|length=8425bp|location=Sequence derived from alignment at scaffold_147:154445..162869- (Clytia hemisphaerica)
CCCCCTTGTTTCAGGTTACAGTCTCTTTTTATATCTTCGGATAATTTTTG
TGGATTTATTTCAAGTGACTCCTTTACGGAGGTCAGACAGACAGACAGAA
AAATGAAGATTCTTAATATTCTAATAATTTTAGTTAATTACTTGGTGGTT
AGGTAAGATTTTACTTGTTGAAGGGGGAGGGGGTGAAATGATTTCAAAAT
GAGGACATCAAGAAATTCATTTTTCAATATAAATTTCTCAATACAGTGGG
CACCATCTGAGAATAGGGTCAGTGTCCGCTAACTAAAAGTGTCCGCATTT
TAGAAACTTTTCATCTATGTTCTAATTTTGGTATAACGTACTATTAAGGG
GTTAAANAACTTTTGATCTATGTTCTAATTTTGGTATAAGGTACTATTAA
GGGGTTAAGTATGTAAAATTTTGGACCTAAATGCGTATTTAGAGACACTA
GGACATGGAAGAACAAGAAAATGATAATTCAAATGTGACAATTTTAGTTT
TTATGAATCATAGTAGTCTTCAGGGTCCTGCAGTTTATCATTTTTATTAC
TTAAGAAAATTCACCGACTGAATAAAAGGAGTGCTCGTCTTTAAACAATT
AGTTTAATGAAACATTCAAGTATTTTTATAAGAAATAAATAGTTTGGATA
AATCAATCCTATCTAATCATGGATATTGCCCTTATGTATTACATTGAGGT
GAAATCTTTAATAAATTTTTAAAGTTTGTGACCAGTTTGACCGTCGATGT
CTGCTAATTAGAGAGGAAAAAGTAGGGTTTCGTCTATTTCGTGCAGAAAA
CTTTGTCCACTAAATGGATTGTCCGCTAATTGAGTGTCCGCCTTTTGGAA
ACTTTATTATGACGATTTGAGTAGGAAATGACCGGGGAAAATTGAATTGT
TCACTAATCAGAGGTGTCCGCCTTTTAGAGTGTCCATTGATTAAAGGTTT
TACTGTATAATATTTTTTTTCGAAAAAGATGATTGCATTTTTATCTTTGA
AACTATTGTTCAGTTAGTAGCTCTACCTCCATCTATTTCGAACATTCATT
GTCGAGAACAATATAGAATGAAGTCAGAGCAGGGGTGTGTTGGTCCAGTG
GTCTAACGCGTTAGGGCAACAAGGTAGAGGTTCCAAGGAGTTCGTCCATA
TCAAAATTATCCGATAGGCAGGTCAGTTGGCCACCAATAAATGGACCCCG
TGAAAATAATTGGGAGACTGTTTCAAGGTTCCTATGTTACTGAGCCTTTC
AAATGAAGTATCGACACTGCAGGCACAGTGGAAGCCTTTTATATCTGGTA
CGGCGAATGAGGAAAATTAAGCGATTTTATAGCGATTTTATAGCGGTTTT
ACCGACGAAGAAGAAAATTTCGGGGTTTTTTGTGAAAATCTGGTACGGTG
GCCGCCGTACCTGCCGTACCCTTTGCGTCGTTCCTGCACTGTATATACAA
ACGATTGTCAATATTTTCAGATCAGTTCATAACAGTTAAAATGAAATACC
ATATACGTTAAAACGGGGAATAATTTTGAGACCAACAAAGGCTTAATCAT
CAGGAACATCGTGGACCATAAATATTTTTATGCTTAACGCAAACAGAGCT
GCATTCACATTATTTTTTTCAAGCAAGATTCTCATCATAGAAGGTAATTT
ACCTCTAATAAAAACACGTGCTCATCTCAATTAGTCTCACTGTTGTTTTA
GCTCAGTTAAATCAAGTCTTGTATCAGTCAAACCAAGTCTTGTATTGTTT
TAATTTTTAAAAGAAAAGTTACCCATAGTGACACTCTCGCTATCAAAATA
TACGACAGCGGTACGCCTAATTGTATAGAAATTACATCACGTAATTCTAC
TCTCTCCTCGTCTTTATGATATTCCTTGTTGTTATAATCTTTTTTACTCT
CGGGTACCTAATATTCGGGAGGGCGGGGGCTGAAAAAATCTCAAAACTTA
ATAAGAGGCTGGAATAAAAATGTCCTGGCTNCTGAAAAAATCTCAAAACT
TAATAAGAGGCTGGAATAAAAATGTCCTGGCTGGATAATGTTTGAAAAAT
TAATTAGCGGAGGCTGCTATTAGGTACCCGAGTGTAGTAGGCTTTCCTTT
TTTAAATAGAGTGGTTCTTGGCGTGCAAGAATCAACCCTTGAAGAGTCTT
TTTCTTTTTCAAAATCAACTTTTAATGTTTACGGCGTTCGAGACCTAACA
TGAACTACAGCTGACCTAGCCTGTTAGACGAAAACCGATTTTTTATCGCG
ATTTAACTTTAATCTTAAAACAAAGAAAAAGTTTGGTTTGTGGGAAGGCA
CTGGCTACAGATGACCCTTATCGCTTATACATATCTAGTACTATTTTGCC
ATAAGTTCTTGCGCTAAACCTCTATTGGTGACGTGAAAACTAAACGTAAC
CTACTAACGTGCTTCTTATATACTCTGGTACGCTCGTACCAGAGTGTCGG
TATTGACCTTTTTTTGCGTCGGTATTTCGGTATAATTTTCAATCGGTGAT
ACGGTAATTTTGGAGAAACGGTGCTAAATCAAGGGCTATTTCTCAGAAAT
TCCTCTTATCCTCTTATCTCATATTAGAATTTTGAAAAAACTATGAAAAA
ATGACGGTGTCGGTATTTCGTAAAAAATGTGTCGGTATTGCAGTGATTTT
GTGAAAAACTGTTGGTATTTCGGTGTCCTGGACCCTCGTACGCTCCCACT
ATAGAGGTCTGCGATTCAGACTAATGAATTGCAGCATTATATACTTCCTT
GAAATATAGGAGACTTTATCGGTAGAAGTCGTGTGGAAAATCTTAAAACG
ATTTTCACCACAAAGTTTTCTTTCTTTTTCCTTACATACAGCACCAATGC
GAATTGTGATCTCGATCTTGGTTTCATTATCGATGAATCTGGCTCCATCA
CCAGTACAGATTTCAAAAAATCCATCGACTTCGTCAAATCAGTAACACAA
CAATTTAACGTTGATACATACAAGACTAGAGTATCAATTATAACTTTCTC
AAATGATGCTGTTCAACATTTTGCATTCCGAGATTGGTATGGATACAGTC
GACAAGGCTTGGATTATTATCTACCACGAATCCGCCAACGAGGTTTGAAA
ATCTTTGTTTTTTAAAGTGTTTGATTATAGATATATCTATATGATAATAA
AACTCTAACCGGTGTAACAGAAAATAAGTACTTCCCGCAAAATAAGTACT
CCCACTCCCACTCTCCGGTATTTTTTTTCCGAGGAAATTTGTCCCACTAA
ACTTGTACTTGCTACAAAAGATATTTAAATTTTAAGAAAAAGTGAATATC
TTTATAGAGAGAAGACGCCCTCTTGGATATATACTTTCGGGAGTACATTT
TTTCTAGGAAAATGGTACTGTATACCATAGACCTTCACAAACACCGGGTT
GAAAGTAAAATCTATCGCTAAGGTTTAAAAAAATGCAGTCCTCGAAAACA
AAGGATTGCGGCGTGTTCTGGATGGGAAATAAGTGGCTTCACTTTTTCTT
GCCTGGGAAAGGTTAGAGATTCTACTGTATCCTTTCGGGCTTTAAACTCA
ATGCATATACTGTTAACAGTGAAGATTCTGTTTGCGTTCGAAAAAATGGC
GTTTCTATACGACTCCATCGAGATAAAATGTTCTCTTGTTATTGCTATCC
TAAAGTCTGTTAAAAGTTTATTTATACTTCGTTTCATTTTAATCATTGCT
CTTGGTTAGAAAATTAACATATAATCATCAGTATTACCTCGTTGAAAAGA
TAATTTTGAGTGGATAGGTTTAAGCATTTTCTGAAATTTCTTTTGAAATT
GAAGATGAAGAATGAAAATGAAGAAAGTGAAGATCTTTTCCATCTTCTCC
TTGTACAAAGAATTTCTTCACTGCAATTTTTTTTAACAGACTGTAATAAA
ATTAATATTTTCTTATGTACAGGTGGGGGAACGTACACGAACAAAGCGTT
GGATTTGGCACGAACCAAAATGTACACCCTGAATAGCGGTGAACGACACG
ATAAAGTCAACGTAAGCTCATGCTACATTCTGTTTTTGTTAACAAAATAT
TCTTCTCCTGATTTTTCAAATTTAGCCTTTCCAGAAAGAAATTGAATTTG
GAGGTAGAGGATACAAAATATTTTAGAAATTCACCCCCCCCCCCCCCACN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACACTATATCCTATATA
TGTACGAACATTTTCTGGAAGAGCCCATTCTTAGATCTTCCTTTTAGTTT
TTGTGATAAACTTTTGGATTTTTAATCATTCATATACAGAAAAATCCTTG
TTTTCACTTTACTATTTGAAGAACGAAAGCAGACAAAATCTTCCTCTTTT
TCAAGTACTTTACGATTCTAATTGGACAGAGTAAACTGTGTTCACCCCCT
GTATAAGTATCGGAGAAAGAAGTTTTTTCAGAAGAAAGTGGATCAGTTTT
TTGTATAGAGTAACATTTCATAGAATGCACAGGGGTCCAGCCCCTAGCAA
TTTTTAGAAGGGGGAGGGCTATGAAAATAGCCCCCAGCTAAATTTTAAAA
AGCCCCCACCTCCACGAAAGGGAAAATAAAAAAATTTAGCTTGAAAAAAG
CTAAATTGATGCGCAATTTTAAGGCAGGAGATAAAGACTCATCTCATAAA
AGATAAAATATACCTCAGTTTGATTACTCAAAACATAGCCCCCTTATTGA
GTTAGCCCCCAGCATTTTTTTTAATCGTCCCCAAATAAAAAATTTGCCTC
CCTCCTAATCTCAGGGAAAGGGCACCCCTGACCACAATACATGATTTCTA
ATCCAAGAAAAATGTCCAATCGATTAAAAGAAATTTTGTTCATGTAAATT
CTGTTTCACTTTTTTCCTACTCTTGTTTCGGGGTTTACCTTTTTTTCAGG
TCCTTGTGGTGATTTCAGACGGAAAGAGCNTTTTTTCCTACTCTTGTTTC
GGGGTTTACCTTTTTTTCAGGTCCTTGTGGTGATTTCAGACGGAAAGAGC
CAATCAGGAAGTAGTGTTTTAAAAGCTGCAGCTGATACATTACGTAATTC
TGGTGTCAACATTCTGGCAGTTGGAGTTGGTTCAGGAATCAATAACAATG
AATTGAACATCATCTCTGGAAGTTACTCCAATATTTTCAGTGTTACAAAT
GCGTATTATTTGACCTCAATCGTTTCCAAAATCAAGTCTGTCAGTTGCAA
AGGTACAAATATTTTCTTTATGACAGTTTTTAAAGGTTTTGTTTTTAAAT
AAGAGTGACATCGCGTTTGCTTACTCATCGATTTTAATTTACAAGTTTTT
TTCACATTGGATTGACACGTATGCGGAGCAAGATTGGTCAGAAAGAGGAA
AAGAAAAACATTTTTCTGCTTATATCAGCATAACATAACAATAGCAAAAC
ACTGTCCTGATATCAAATATGTGTCNAACATTTTTCTGCTTATATCAGCA
TAACATAACAATAGCAAAACACTGTCCTGATATCAAATATGTGTCTTATA
TGAAACCTGAAACACTTGTGTAAAAATAAAACCTTTAATACAGTCCATCC
TTTATGAATGATATGATTTCGTATGTCTGATAGCTCAGTCGGTAGACCAT
TTATCTTCTTATCCAAGGATTGTGGGTTCGATCCCCAGCTCCCGTCCACT
CTACAATTGAATAGCTTAGATAGGATAATCTAATCTAGGCGGTAAGTAAA
ATAGCGTAGGTGTGGCGCTCCATTTCAGTATTCGATCAGACCTAGCGCAA
ATAGAATACACGATAGATTCCGTTACTCCCGGCTCCGCCGACGCCGACAA
TACAATCAGACTACACATTTCCTTGACCCATTCATTACAACCCCCCCCCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCTACTTATCCTATTTCTACAGCTGTGACATGTCATTAC
AAGGATTGTCATTATCGAAGTTGGAGTAGTTGGTCTGCAACATGTGGTCA
AGCTACTCGAACACGATCATTTTATTATTCTTCGAGTAGAAGCAAAACAC
AAGTCAGTGGATGTGCTGGATTGAGAACAACTTGTCAATCAAAAGAATCA
GAAACTAAACAACTAGCTGCATGTCCATGTAAGATTCTTATCTTATCTTG
ATTTATTTTGATGTTACAGCTAATAGACCTTTTCATAAATTACGTCACGA
ACATCACTTGCCTCGTTTTGAAATTATTGCCATGGTGATTAACTCCCCGG
ATTTTATTAAAACTACTTTCTATTCATAAAAAAAATCATTTAATGTATCA
AGAGATATAATCACCATTTAAATTGTTTGAATACAAAGCAAGTTATGTTC
GTGACGTAATTTATGAAAAGGTCTATTCCCTCTAATTCGAACTCAAACGG
GAAGTCTAATGTGTTTCAATAGACCTTATCGGAGTTTTTGATTTTTCTAA
AAAAGTGATGCATTGTGGGATTGTTTCGAGTGTATTAAAATAGAAATCTC
TTAGGAATTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTAGGAATTCCTCGAGGGAATTCTATTGTAATACACTCGAAACAATCCC
ACAATGCATCGCTTTTTTAGAAAAATCAAAAACTCCGATAAGGTCTATTA
CAAAGAGATTCGAATCGTAGAGAGTATTTCCGATGACAGAAACTGATAAT
TTTTAGCTCAAATCAAAAAACAATTTGTATAAAAGAAGTCCGAATTAGCG
AAAGTTCGAAATTTCCTTAACTTGGAATAAATTTGTGTTCCCCGCGTGTG
TTTGAGTTTTGGAGACTCAACTGTATCTAGGTATATGTAATAAAAACCAA
TCGGCGGCAACTTCAATGACGTTAATGTTACTGGTAAGCTGTAACACAGT
CTCCCAACCTTTGAGGGGACATATAGGAGTATTCTGGTTAAAAGCTAAAT
CATAAATTTTCTTTACCCCCCTGGAGACTCCTTGGAGACTTTGGAGACTC
AACTGTATCTAGAAATCACCAATGCGGTAACTTCAATGAAGTTAATGTTC
CTTGTAAGAGCTGTAACCCAGTCTCTCTACGCTTTCAGGGGACATACAGA
TGTATTCCGGTTAAAAGCTAAATCATGAATTTTATTTATTTTCTCTCTCT
AGTATATTCATCAGCACGATGCACAGTCAAGAATTGTTATTACTACAGCT
GGAGTAGCTGGTCTGCGTCCTGTGGAAGTGTTTCCCGTTCACGACGTTAT
TATTACTCGTCAAGCTCTACAGTAACCGTCGCATCTTCAAGCCAATGTGC
ACAATACAAAACATCATGTGAAAAT

Coding sequence (CDS) from alignment at scaffold_147:154445..162869-

>TCONS_00048850 ID=TCONS_00048850|Name=TCONS_00048850|organism=Clytia hemisphaerica|type=CDS|length=6552bp|location=Sequence derived from alignment at scaffold_147:154445..162869- (Clytia hemisphaerica)
TATATTCATCAGCACGATGCACAGTCAAGAATTGTTATTACTACAGCTGG
AGTAGCTGGTCTGCGTCCTGTGGAAGTGTTTCCCGTTCACGACGTTATTA
TTACTCGTCAAGCTCTACAGTAACCGTCGCATCTTCAAGCCAATGTGCAC
AATACAAAACATCATGTGAAAATCTGTGACATGTCATTACAAGGATTGTC
ATTATCGAAGTTGGAGTAGTTGGTCTGCAACATGTGGTCAAGCTACTCGA
ACACGATCATTTTATTATTCTTCGAGTAGAAGCAAAACACAAGTCAGTGG
ATGTGCTGGATTGAGAACAACTTGTCAATCAAAAGAATCAGAAACTAAAC
AACTAGCTGCATGTCCATGTCCTTGTGGTGATTTCAGACGGAAAGAGCCA
ATCAGGAAGTAGTGTTTTAAAAGCTGCAGCTGATACATTACGTAATTCTG
GTGTCAACATTCTGGCAGTTGGAGTTGGTTCAGGAATCAATAACAATGAA
TTGAACATCATCTCTGGAAGTTACTCCAATATTTTCAGTGTTACAAATGC
GTATTATTTGACCTCAATCGTTTCCAAAATCAAGTCTGTCAGTTGCAAAG
GTGGGGGAACGTACACGAACAAAGCGTTGGATTTGGCACGAACCAAAATG
TACACCCTGAATAGCGGTGAACGACACGATAAAGTCAACCACCAATGCGA
ATTGTGATCTCGATCTTGGTTTCATTATCGATGAATCTGGCTCCATCACC
AGTACAGATTTCAAAAAATCCATCGACTTCGTCAAATCAGTAACACAACA
ATTTAACGTTGATACATACAAGACTAGAGTATCAATTATAACTTTCTCAA
ATGATGCTGTTCAACATTTTGCATTCCGAGATTGGTATGGATACAGTCGA
CAAGGCTTGGATTATTATCTACCACGAATCCGCCAACGAGCCCCCTTGTT
TCAGGTTACAGTCTCTTTTTATATCTTCGGATAATTTTTGTGGATTTATT
TCAAGTGACTCCTTTACGGAGGTCAGACAGACAGACAGAAAAATGAAGAT
TCTTAATATTCTAATAATTTTAGTTAATTACTTGGTGGTTAGTATATTCA
TCAGCACGATGCACAGTCAAGAATTGTTATTACTACAGCTGGAGTAGCTG
GTCTGCGTCCTGTGGAAGTGTTTCCCGTTCACGACGTTATTATTACTCGT
CAAGCTCTACAGTAACCGTCGCATCTTCAAGCCAATGTGCACAATACAAA
ACATCATGTGAAAATCTGTGACATGTCATTACAAGGATTGTCATTATCGA
AGTTGGAGTAGTTGGTCTGCAACATGTGGTCAAGCTACTCGAACACGATC
ATTTTATTATTCTTCGAGTAGAAGCAAAACACAAGTCAGTGGATGTGCTG
GATTGAGAACAACTTGTCAATCAAAAGAATCAGAAACTAAACAACTAGCT
GCATGTCCATGTCCTTGTGGTGATTTCAGACGGAAAGAGCCAATCAGGAA
GTAGTGTTTTAAAAGCTGCAGCTGATACATTACGTAATTCTGGTGTCAAC
ATTCTGGCAGTTGGAGTTGGTTCAGGAATCAATAACAATGAATTGAACAT
CATCTCTGGAAGTTACTCCAATATTTTCAGTGTTACAAATGCGTATTATT
TGACCTCAATCGTTTCCAAAATCAAGTCTGTCAGTTGCAAAGGTGGGGGA
ACGTACACGAACAAAGCGTTGGATTTGGCACGAACCAAAATGTACACCCT
GAATAGCGGTGAACGACACGATAAAGTCAACCACCAATGCGAATTGTGAT
CTCGATCTTGGTTTCATTATCGATGAATCTGGCTCCATCACCAGTACAGA
TTTCAAAAAATCCATCGACTTCGTCAAATCAGTAACACAACAATTTAACG
TTGATACATACAAGACTAGAGTATCAATTATAACTTTCTCAAATGATGCT
GTTCAACATTTTGCATTCCGAGATTGGTATGGATACAGTCGACAAGGCTT
GGATTATTATCTACCACGAATCCGCCAACGAGCCCCCTTGTTTCAGGTTA
CAGTCTCTTTTTATATCTTCGGATAATTTTTGTGGATTTATTTCAAGTGA
CTCCTTTACGGAGGTCAGACAGACAGACAGAAAAATGAAGATTCTTAATA
TTCTAATAATTTTAGTTAATTACTTGGTGGTTAGTATATTCATCAGCACG
ATGCACAGTCAAGAATTGTTATTACTACAGCTGGAGTAGCTGGTCTGCGT
CCTGTGGAAGTGTTTCCCGTTCACGACGTTATTATTACTCGTCAAGCTCT
ACAGTAACCGTCGCATCTTCAAGCCAATGTGCACAATACAAAACATCATG
TGAAAATCTGTGACATGTCATTACAAGGATTGTCATTATCGAAGTTGGAG
TAGTTGGTCTGCAACATGTGGTCAAGCTACTCGAACACGATCATTTTATT
ATTCTTCGAGTAGAAGCAAAACACAAGTCAGTGGATGTGCTGGATTGAGA
ACAACTTGTCAATCAAAAGAATCAGAAACTAAACAACTAGCTGCATGTCC
ATGTCCTTGTGGTGATTTCAGACGGAAAGAGCCAATCAGGAAGTAGTGTT
TTAAAAGCTGCAGCTGATACATTACGTAATTCTGGTGTCAACATTCTGGC
AGTTGGAGTTGGTTCAGGAATCAATAACAATGAATTGAACATCATCTCTG
GAAGTTACTCCAATATTTTCAGTGTTACAAATGCGTATTATTTGACCTCA
ATCGTTTCCAAAATCAAGTCTGTCAGTTGCAAAGGTGGGGGAACGTACAC
GAACAAAGCGTTGGATTTGGCACGAACCAAAATGTACACCCTGAATAGCG
GTGAACGACACGATAAAGTCAACCACCAATGCGAATTGTGATCTCGATCT
TGGTTTCATTATCGATGAATCTGGCTCCATCACCAGTACAGATTTCAAAA
AATCCATCGACTTCGTCAAATCAGTAACACAACAATTTAACGTTGATACA
TACAAGACTAGAGTATCAATTATAACTTTCTCAAATGATGCTGTTCAACA
TTTTGCATTCCGAGATTGGTATGGATACAGTCGACAAGGCTTGGATTATT
ATCTACCACGAATCCGCCAACGAGCCCCCTTGTTTCAGGTTACAGTCTCT
TTTTATATCTTCGGATAATTTTTGTGGATTTATTTCAAGTGACTCCTTTA
CGGAGGTCAGACAGACAGACAGAAAAATGAAGATTCTTAATATTCTAATA
ATTTTAGTTAATTACTTGGTGGTTAGTATATTCATCAGCACGATGCACAG
TCAAGAATTGTTATTACTACAGCTGGAGTAGCTGGTCTGCGTCCTGTGGA
AGTGTTTCCCGTTCACGACGTTATTATTACTCGTCAAGCTCTACAGTAAC
CGTCGCATCTTCAAGCCAATGTGCACAATACAAAACATCATGTGAAAATC
TGTGACATGTCATTACAAGGATTGTCATTATCGAAGTTGGAGTAGTTGGT
CTGCAACATGTGGTCAAGCTACTCGAACACGATCATTTTATTATTCTTCG
AGTAGAAGCAAAACACAAGTCAGTGGATGTGCTGGATTGAGAACAACTTG
TCAATCAAAAGAATCAGAAACTAAACAACTAGCTGCATGTCCATGTCCTT
GTGGTGATTTCAGACGGAAAGAGCCAATCAGGAAGTAGTGTTTTAAAAGC
TGCAGCTGATACATTACGTAATTCTGGTGTCAACATTCTGGCAGTTGGAG
TTGGTTCAGGAATCAATAACAATGAATTGAACATCATCTCTGGAAGTTAC
TCCAATATTTTCAGTGTTACAAATGCGTATTATTTGACCTCAATCGTTTC
CAAAATCAAGTCTGTCAGTTGCAAAGGTGGGGGAACGTACACGAACAAAG
CGTTGGATTTGGCACGAACCAAAATGTACACCCTGAATAGCGGTGAACGA
CACGATAAAGTCAACCACCAATGCGAATTGTGATCTCGATCTTGGTTTCA
TTATCGATGAATCTGGCTCCATCACCAGTACAGATTTCAAAAAATCCATC
GACTTCGTCAAATCAGTAACACAACAATTTAACGTTGATACATACAAGAC
TAGAGTATCAATTATAACTTTCTCAAATGATGCTGTTCAACATTTTGCAT
TCCGAGATTGGTATGGATACAGTCGACAAGGCTTGGATTATTATCTACCA
CGAATCCGCCAACGAGCCCCCTTGTTTCAGGTTACAGTCTCTTTTTATAT
CTTCGGATAATTTTTGTGGATTTATTTCAAGTGACTCCTTTACGGAGGTC
AGACAGACAGACAGAAAAATGAAGATTCTTAATATTCTAATAATTTTAGT
TAATTACTTGGTGGTTAGTATATTCATCAGCACGATGCACAGTCAAGAAT
TGTTATTACTACAGCTGGAGTAGCTGGTCTGCGTCCTGTGGAAGTGTTTC
CCGTTCACGACGTTATTATTACTCGTCAAGCTCTACAGTAACCGTCGCAT
CTTCAAGCCAATGTGCACAATACAAAACATCATGTGAAAATCTGTGACAT
GTCATTACAAGGATTGTCATTATCGAAGTTGGAGTAGTTGGTCTGCAACA
TGTGGTCAAGCTACTCGAACACGATCATTTTATTATTCTTCGAGTAGAAG
CAAAACACAAGTCAGTGGATGTGCTGGATTGAGAACAACTTGTCAATCAA
AAGAATCAGAAACTAAACAACTAGCTGCATGTCCATGTCCTTGTGGTGAT
TTCAGACGGAAAGAGCCAATCAGGAAGTAGTGTTTTAAAAGCTGCAGCTG
ATACATTACGTAATTCTGGTGTCAACATTCTGGCAGTTGGAGTTGGTTCA
GGAATCAATAACAATGAATTGAACATCATCTCTGGAAGTTACTCCAATAT
TTTCAGTGTTACAAATGCGTATTATTTGACCTCAATCGTTTCCAAAATCA
AGTCTGTCAGTTGCAAAGGTGGGGGAACGTACACGAACAAAGCGTTGGAT
TTGGCACGAACCAAAATGTACACCCTGAATAGCGGTGAACGACACGATAA
AGTCAACCACCAATGCGAATTGTGATCTCGATCTTGGTTTCATTATCGAT
GAATCTGGCTCCATCACCAGTACAGATTTCAAAAAATCCATCGACTTCGT
CAAATCAGTAACACAACAATTTAACGTTGATACATACAAGACTAGAGTAT
CAATTATAACTTTCTCAAATGATGCTGTTCAACATTTTGCATTCCGAGAT
TGGTATGGATACAGTCGACAAGGCTTGGATTATTATCTACCACGAATCCG
CCAACGAGCCCCCTTGTTTCAGGTTACAGTCTCTTTTTATATCTTCGGAT
AATTTTTGTGGATTTATTTCAAGTGACTCCTTTACGGAGGTCAGACAGAC
AGACAGAAAAATGAAGATTCTTAATATTCTAATAATTTTAGTTAATTACT
TGGTGGTTAGTATATTCATCAGCACGATGCACAGTCAAGAATTGTTATTA
CTACAGCTGGAGTAGCTGGTCTGCGTCCTGTGGAAGTGTTTCCCGTTCAC
GACGTTATTATTACTCGTCAAGCTCTACAGTAACCGTCGCATCTTCAAGC
CAATGTGCACAATACAAAACATCATGTGAAAATCTGTGACATGTCATTAC
AAGGATTGTCATTATCGAAGTTGGAGTAGTTGGTCTGCAACATGTGGTCA
AGCTACTCGAACACGATCATTTTATTATTCTTCGAGTAGAAGCAAAACAC
AAGTCAGTGGATGTGCTGGATTGAGAACAACTTGTCAATCAAAAGAATCA
GAAACTAAACAACTAGCTGCATGTCCATGTCCTTGTGGTGATTTCAGACG
GAAAGAGCCAATCAGGAAGTAGTGTTTTAAAAGCTGCAGCTGATACATTA
CGTAATTCTGGTGTCAACATTCTGGCAGTTGGAGTTGGTTCAGGAATCAA
TAACAATGAATTGAACATCATCTCTGGAAGTTACTCCAATATTTTCAGTG
TTACAAATGCGTATTATTTGACCTCAATCGTTTCCAAAATCAAGTCTGTC
AGTTGCAAAGGTGGGGGAACGTACACGAACAAAGCGTTGGATTTGGCACG
AACCAAAATGTACACCCTGAATAGCGGTGAACGACACGATAAAGTCAACC
ACCAATGCGAATTGTGATCTCGATCTTGGTTTCATTATCGATGAATCTGG
CTCCATCACCAGTACAGATTTCAAAAAATCCATCGACTTCGTCAAATCAG
TAACACAACAATTTAACGTTGATACATACAAGACTAGAGTATCAATTATA
ACTTTCTCAAATGATGCTGTTCAACATTTTGCATTCCGAGATTGGTATGG
ATACAGTCGACAAGGCTTGGATTATTATCTACCACGAATCCGCCAACGAG
CCCCCTTGTTTCAGGTTACAGTCTCTTTTTATATCTTCGGATAATTTTTG
TGGATTTATTTCAAGTGACTCCTTTACGGAGGTCAGACAGACAGACAGAA
AAATGAAGATTCTTAATATTCTAATAATTTTAGTTAATTACTTGGTGGTT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031044XLOC_031044Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048850-exon-scaffold_147-1575043694:162718..162869TCONS_00048850-exon-scaffold_147-1575043694:162718..162869Clytia hemisphaericaexon
TCONS_00048850-exon-scaffold_147-1575043694:159778..160028TCONS_00048850-exon-scaffold_147-1575043694:159778..160028Clytia hemisphaericaexon
TCONS_00048850-exon-scaffold_147-1575043694:158859..158947TCONS_00048850-exon-scaffold_147-1575043694:158859..158947Clytia hemisphaericaexon
TCONS_00048850-exon-scaffold_147-1575043694:157568..157799TCONS_00048850-exon-scaffold_147-1575043694:157568..157799Clytia hemisphaericaexon
TCONS_00048850-exon-scaffold_147-1575043694:155642..155836TCONS_00048850-exon-scaffold_147-1575043694:155642..155836Clytia hemisphaericaexon
TCONS_00048850-exon-scaffold_147-1575043694:154445..154617TCONS_00048850-exon-scaffold_147-1575043694:154445..154617Clytia hemisphaericaexon
TCONS_00048850-exon-scaffold_147-1510915933:162718..162869TCONS_00048850-exon-scaffold_147-1510915933:162718..162869Clytia hemisphaericaexon
TCONS_00048850-exon-scaffold_147-1510915933:159778..160028TCONS_00048850-exon-scaffold_147-1510915933:159778..160028Clytia hemisphaericaexon
TCONS_00048850-exon-scaffold_147-1510915933:158859..158947TCONS_00048850-exon-scaffold_147-1510915933:158859..158947Clytia hemisphaericaexon
TCONS_00048850-exon-scaffold_147-1510915933:157568..157799TCONS_00048850-exon-scaffold_147-1510915933:157568..157799Clytia hemisphaericaexon
TCONS_00048850-exon-scaffold_147-1510915933:155642..155836TCONS_00048850-exon-scaffold_147-1510915933:155642..155836Clytia hemisphaericaexon
TCONS_00048850-exon-scaffold_147-1510915933:154445..154617TCONS_00048850-exon-scaffold_147-1510915933:154445..154617Clytia hemisphaericaexon
TCONS_00048850-exon-scaffold_147-1491911889:162718..162869TCONS_00048850-exon-scaffold_147-1491911889:162718..162869Clytia hemisphaericaexon
TCONS_00048850-exon-scaffold_147-1491911889:159778..160028TCONS_00048850-exon-scaffold_147-1491911889:159778..160028Clytia hemisphaericaexon
TCONS_00048850-exon-scaffold_147-1491911889:158859..158947TCONS_00048850-exon-scaffold_147-1491911889:158859..158947Clytia hemisphaericaexon
TCONS_00048850-exon-scaffold_147-1491911889:157568..157799TCONS_00048850-exon-scaffold_147-1491911889:157568..157799Clytia hemisphaericaexon
TCONS_00048850-exon-scaffold_147-1491911889:155642..155836TCONS_00048850-exon-scaffold_147-1491911889:155642..155836Clytia hemisphaericaexon
TCONS_00048850-exon-scaffold_147-1491911889:154445..154617TCONS_00048850-exon-scaffold_147-1491911889:154445..154617Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048850-proteinTCONS_00048850-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_147supercontigscaffold_147:154445..162869 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.147661	0	0	0.299714	0	0	0	0.19628	0	0	3.51417	3.38882	0	0	0.729116	2.61364	12.0354	28.3212	8.58924	10.6909	1.61267	5.82167	10.2032	14.9594	0	0	0	0.0643972
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
Blast
[Close]
BLAST of TCONS_00048850 vs. Swiss-Prot (Human)
Match: COCA1 (Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL12A1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 2.728e-17
Identity = 52/168 (30.95%), Postives = 89/168 (52.98%), Query Frame = 1 
Query:  175 DLGFIIDESGSITSTDFKKSIDFVKSVTQQFNVDTYKTRVSIITFSNDAVQHFAFRDWYGYSRQGLDYYLPRIRQRGGGTYTNKALDLARTKMYTLNSGERHDKVNVLVVISDGKSQSGSSVLKAAADTLRNSGVNILAVGVGSGINNNELNIISG--SYSNIFSVTN 672
            DL F++D S S+   +FK  +DF+ ++   F++   KTRV ++ +S+D    F    +  Y R  L   + +I  +GG T T  A+D      +T ++G R     V ++I+DGKSQ    +    A  LRN GV + ++G+ +  +  EL  I+   S +++F+V N
Sbjct:  140 DLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVGVVQYSSDTRTEFNLNQY--YQRDELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGARVGFPKVAIIITDGKSQDEVEI---PARELRNVGVEVFSLGIKAA-DAKELKQIASTPSLNHVFNVAN 301
The following BLAST results are available for this feature:
BLAST of TCONS_00048850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COCA12.728e-1730.95Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL... [more]
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