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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048831 ID=TCONS_00048831|Name=TCONS_00048831|organism=Clytia hemisphaerica|type=transcript|length=1579bp
CATAGCATGAAAAAGAATACTATTTTCGAAGCATTGTTTTTAGTCATTAC
ATGTATACCTTCACTTACGTTAGCAATCGAACCTATCACTGTTGGAATAG
CTGTTGTTGCTGGTGGGGGAGCAATTGCAGGGAAATGGGCATATTGTCAA
TTTAAAGAGTGTTGTACTCCAAAGTGGACAAATCATTCTTCACACACAAT
GACTGATTCATTTCGTGACAATTTGATTGGTCAACATTTAGTGACACACA
TTGTTGCGAAAAGTATACGAAAACATTTACAGCAGGAAAACCCTAAGAAA
GCTCTTGTTTTATCATTTCACGGATGGACTGGTTCAGGGAAAAATTTTGT
TGCTGACATAATAGCTAAGCACGTATACAAGAAAGGTGTACAGAGTAAAT
TCATAACCAAATATATAGCTGGAAATGATTTTCCACATAAAGACGAGTTA
AAACAATATAAGGATAGAGTAAAACGAGAGATTGTTGAGAAAACTAAAGC
TTGTGACcattcaatgtttatttttgatgaaattgaaaaaatgcctGCTG
GATTGATTGATGTTTTGAAAGCATTTATTGATTTCCATCAAGATGTCAAC
GGTGTTGATTTTCGTAAAAACATATTCATCTTTATTGGTAATACTGGTGG
AGATGAAATCAACAAAGAAGTATTCAAACACTTCCGGTCTGGAGAATCGA
GACAGGATATTACTTCCAAGCAAATGGAGTTTTTATTATCAATAGACGCT
TTCAATAATAATGGTGGACTTAAAGATGCCAATATTTTGCTGGCAGGTTT
AGTAGACTTTTTTGTACCATTCCTACCTATGGAAAGAGAACATGTAAAAC
AATGTGTACGAGCTGAATTAATTCGAAGAAATCATGCATTGAATGAAAAG
ATTGTGAATGAAGTAGCTAAAGAGATGGattattttcctaagaaaaatcC
AATGTTTTCAACTACTGGATGCAAGAAAGTTTCTAAAAAGATGGACTTAA
TTTTGGACTAATTTACACTCACTCACTAATACTGAATTAGTCAACTCTCT
TTAATTGGGTCTTCAACGTTCAAgggaccagggttttttattagaattat
ttaaaggtgaattaaaaaatagaaagacTTTTTAAAGAGAGAggcattca
tttttttttaatcatataaggattcgaattagagaaaaagaaTCGACTTA
GAGAGAGTTTGCTGAATATAATACAAAACCTACTTGACCACTTCTCTTGT
CCAACCAAATATTCTCtgtcaagaacatttttgtTGTCATCTagacccgg
ggggggcactgggtttgcggactgacggtatgtgcgggccaaaaattggc
ttttaaaattgcacccttacagtgcagcaaaaatcagtgaaaatcatatc
cttagagtgcattttcccccaaattttcgatccctttcgtgcaaaaaatt
cttgcatttttggtcaaaatatttagatttttcaagaattttctgaaatt
tctacccttacagtgcatctctagtttttccgacccttacagtgcatttt
aaacatattggaaaaggtacccttaggac Run BLAST on NCBI transcript from alignment at scaffold_147:228614..230773+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048831 ID=TCONS_00048831|Name=TCONS_00048831|organism=Clytia hemisphaerica|type=transcript|length=2160bp|location=Sequence derived from alignment at scaffold_147:228614..230773+ (Clytia hemisphaerica)
CATAGCATGAAAAAGAATACTATTTTCGAAGCATTGTTTTTAGTCATTAC
ATGTATACCTTCACTTACGTTAGCAATCGAACCTATCACTGTTGGAATAG
CTGTTGTTGCTGGTGGGGGAGCAATTGCAGGTAATTGATTTCAGGAGGAG
AGAATTTGTGTTGAAAAACCACCTGTCTGTAATTCTTATATCAAATATAA
TTTAGGCTGATTCAAGattgcaaaatgttttttcttattaGCCCATTAAA
TGCCACTTCCATTGTATGAGATTGCTCTTGCTCAATTTCTTTGGTACTTG
AATTACTAGCACTGCTACCCATATGCCACCCTGTTTTTTTTTACCCTACC
CAAGATTGTCGAGATTGGCATTTCTATCTTAATTTTGGTGTGTACGCACA
TTTCAAACCAAGGATGGCATTTAAAGTTCTAACCAGACTTCACACATTCA
TTGACTTTTTGAAACTTCAGGCCTTTGTGAATACTTGTCTCAAAACTCCT
GTCAATCCCATTTTGGGGGGGAATAGGGAAGTGTTGTTGGAAGCTCAGGG
GAGTTTTTGGAACTGAAGgcaaaagtggattttcacatTCACTCAAATTA
TTCtaacaatatttttatttcatatatTGAAAGAGATACACAAGAAGGAA
ATTaggcaaaaaatagttttgataAGGTATTTAAGAAATTTTACATTTCT
ATTTATTACAGGGAAATGGGCATATTGTCAATTTAAAGAGTGTTGTACTC
CAAAGTGGACAAATCATTCTTCACACACAATGACTGATTCATTTCGTGAC
AATTTGATTGGTCAACATTTAGTGACACACATTGTTGCGAAAAGTATACG
AAAACATTTACAGCAGGAAAACCCTAAGAAAGCTCTTGTTTTATCATTTC
ACGGATGGACTGGTTCAGGGAAAAATTTTGTTGCTGACATAATAGCTAAG
CACGTATACAAGAAAGGTGTACAGAGTAAATTCATAACCAAATATATAGC
TGGAAATGATTTTCCACATAAAGACGAGTTAAAACAATATAAGGATAGAG
TAAAACGAGAGATTGTTGAGAAAACTAAAGCTTGTGACcattcaatgttt
atttttgatgaaattgaaaaaatgcctGCTGGATTGATTGATGTTTTGAA
AGCATTTATTGATTTCCATCAAGATGTCAACGGTGTTGATTTTCGTAAAA
ACATATTCATCTTTATTGGTAATACTGGTGGAGATGAAATCAACAAAGAA
GTATTCAAACACTTCCGGTCTGGAGAATCGAGACAGGATATTACTTCCAA
GCAAATGGAGTTTTTATTATCAATAGACGCTTTCAATAATAATGGTGGAC
TTAAAGATGCCAATATTTTGCTGGCAGGTTTAGTAGACTTTTTTGTACCA
TTCCTACCTATGGAAAGAGAACATGTAAAACAATGTGTACGAGCTGAATT
AATTCGAAGAAATCATGCATTGAATGAAAAGATTGTGAATGAAGTAGCTA
AAGAGATGGattattttcctaagaaaaatcCAATGTTTTCAACTACTGGA
TGCAAGAAAGTTTCTAAAAAGATGGACTTAATTTTGGACTAATTTACACT
CACTCACTAATACTGAATTAGTCAACTCTCTTTAATTGGGTCTTCAACGT
TCAAgggaccagggttttttattagaattatttaaaggtgaattaaaaaa
tagaaagacTTTTTAAAGAGAGAggcattcatttttttttaatcatataa
ggattcgaattagagaaaaagaaTCGACTTAGAGAGAGTTTGCTGAATAT
AATACAAAACCTACTTGACCACTTCTCTTGTCCAACCAAATATTCTCtgt
caagaacatttttgtTGTCATCTagacccggggggggcactgggtttgcg
gactgacggtatgtgcgggccaaaaattggcttttaaaattgcaccctta
cagtgcagcaaaaatcagtgaaaatcatatccttagagtgcattttcccc
caaattttcgatccctttcgtgcaaaaaattcttgcatttttggtcaaaa
tatttagatttttcaagaattttctgaaatttctacccttacagtgcatc
tctagtttttccgacccttacagtgcattttaaacatattggaaaaggta
cccttaggac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048831-exon-scaffold_147-1491911889:228614..228743 | TCONS_00048831-exon-scaffold_147-1491911889:228614..228743 | Clytia hemisphaerica | exon |
| TCONS_00048831-exon-scaffold_147-1510915933:228614..228743 | TCONS_00048831-exon-scaffold_147-1510915933:228614..228743 | Clytia hemisphaerica | exon |
| TCONS_00048831-exon-scaffold_147-1575043694:228614..228743 | TCONS_00048831-exon-scaffold_147-1575043694:228614..228743 | Clytia hemisphaerica | exon |
| TCONS_00048831-exon-scaffold_147-1491911889:229325..230773 | TCONS_00048831-exon-scaffold_147-1491911889:229325..230773 | Clytia hemisphaerica | exon |
| TCONS_00048831-exon-scaffold_147-1510915933:229325..230773 | TCONS_00048831-exon-scaffold_147-1510915933:229325..230773 | Clytia hemisphaerica | exon |
| TCONS_00048831-exon-scaffold_147-1575043694:229325..230773 | TCONS_00048831-exon-scaffold_147-1575043694:229325..230773 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_147 | supercontig | scaffold_147:228614..230773 + |
Blast
BLAST of TCONS_00048831 vs. Swiss-Prot (Human)
Match: TOR1A (Torsin-1A OS=Homo sapiens GN=TOR1A PE=1 SV=1) HSP 1 Score: 268.085 bits (684), Expect = 2.495e-84 Identity = 132/327 (40.37%), Postives = 200/327 (61.16%), Query Frame = 1
Query: 31 ALFLVITCIPSLTLAIEPITXXXXXXXXXXXXXXKWAYCQFKECCTPKWTNHSSHTMTDSFRDNLIGQHLVTHIVAKSIRKHLQQENPKKALVLSFHGWTGSGKNFVADIIAKHVYKKGVQSKFITKYIAGNDFPHKDELKQYKDRVKREIVEKTKACDHSMFIFDEIEKMPAGLIDVLKAFIDFHQDVNGVDFRKNIFIFIGNTGGDEINKEVFKHFRSGESRQDITSKQMEFLLSIDAFNN-NGGLKDANILLAGLVDFFVPFLPMEREHVKQCVRAELIRRNHALNEKIVNEVAKEMDYFPKKNPMFSTTGCKKVSKKMDLILD 1008
A+ ++ PS+ A+EPI++G+A+ YC F ECC K + S + DNL GQHL I+ ++ + PKK L LS HGWTG+GKNFV+ IIA+++Y+ G+ S ++ ++A FPH + YKD+++ I AC S+FIFDE++KM AGLID +K F+D++ V+GV ++K +FIF+ N G + I +RSG+ R+DI K +E LS+ FNN N G ++++ L+D+FVPFLP+E +H+K C+R E+ R + ++E IV+ VA+EM +FPK+ +FS GCK V K+D D
Sbjct: 6 AVLGLLLLAPSVVQAVEPISLGLALAGVLTGYIYPRLYCLFAECCGQK-RSLSREALQKDLDDNLFGQHLAKKIILNAVFGFINNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATLHFPHASNITLYKDQLQLWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPFLDYYDLVDGVSYQKAMFIFLSNAGAERITDVALDFWRSGKQREDIKLKDIEHALSVSVFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSRVAEEMTFFPKEERVFSDKGCKTVFTKLDYYYD 331
The following BLAST results are available for this feature:
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