TCONS_00048315 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048315
Unique NameTCONS_00048315
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048315 ID=TCONS_00048315|Name=TCONS_00048315|organism=Clytia hemisphaerica|type=transcript|length=1331bp
TTTTCTTCTGTCAATTTCGATGGGAATGTGATCAGCAGGTTAGTGATGAC
TTTCCTTTcaacttttcagttttttcctCTTTAAACCGCTTGCTTTTTCA
ATTCAAAAGAgctttcctttttatttttcgaCTAGTTTTCGAACCTATTG
GAAGCAACCTGAACTGGATATCGGTACATTAAACAAATGAACTAGTACGC
ATTGGGTGAGCAGATCaaacgaaagaaaatttaaagtaGAGAAACTTGGC
AAAAACCGATTTCGCTTGACTGCCAACTTAGCCCGTAAGTTTAAAGGTAA
ACAAAATCAACACCCGATCAAATCCGAGGTAAAAAAACAGGAGCATTTTT
GGGCGAGAAACGACAGGACgaaatacattttaaaactcaCAATGCCTGCA
TATCACTCAAGCCTCGAATCGCCAACTCAACTATGCAAGATGGCTTTACT
TCCTGTCAACAGTAAATTCAAGGGTCCAGCGCCACCAGGCAATGGAAGTC
CGGACATCATTGATGAAACGCTACAATATTTCAAAGCTAACGtcttcttc
aaaaattatgaaattaagTCGCCAGCAGATCGTGTGCTCATTTACTTGAC
TTTATACGTCACTGAGTGCTTGAAAAAATTGCAAAGGATTGGTTCAAAAG
AAGAAGCAAAGAAAGAAATGGCCACTTTGGCCATCACTAACTTCGATATT
CCCGGGGATGCAAAGTTCCCTTTGAATGCGCTGTACGGCAAACCAAAAGA
CAGAACTGAAGCTGATCAAACCCGCATGTATTTCACTCAACTCCGTCAAG
AACTCGGCCAAAGAATCTTGGATAAAGTTTATGAACCCAACACCAACAAA
CCATCCAAGTGGTGGATGTGCTTCGTTAAACGACGATTCATGGATAAATC
TCTCTCAGGACCAGGAATGTAAACAGGGCCTTATTCACACCATAATAACA
TCTATCTTGCACACGCTTGAATTCTGTCTAAAATACTCGTTGTTTAGGGG
TATAAATTATGAAATGTAGAATAatttaatttgtattttttgattttttt
ttgttcataaatttttctgatCTTTATAAATGTTTACTTTCTCTTTACCA
CTTAATTGATTCATGATCTCAGACTGTCTATTTCTCAATTGTAAAGTCAT
TTCTTTACGATCGATTAATAAAAGCCTCCGAGCCTGATCGGGAGCCTGGT
TCTGGAAGAAGGAATTATTTAGTAAGTCAAGTTCAATGAAAactcttttt
cgattttttgtattacagttttttcacaaaaatattttaaatcattttaa
actttcaaattcaagaaaagtGAAAATGTAC
Run BLAST on NCBI

protein sequence of TCONS_00048315-protein

>TCONS_00048315-protein ID=TCONS_00048315-protein|Name=TCONS_00048315-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MPAYHSSLESPTQLCKMALLPVNSKFKGPAPPGNGSPDIIDETLQYFKAN
VFFKNYEIKSPADRVLIYLTLYVTECLKKLQRIGSKEEAKKEMATLAITN
FDIPGDAKFPLNALYGKPKDRTEADQTRMYFTQLRQELGQRILDKVYEPN
TNKPSKWWMCFVKRRFMDKSLSGPGM
Run BLAST on NCBI

transcript from alignment at scaffold_142:759794..772545+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048315 ID=TCONS_00048315|Name=TCONS_00048315|organism=Clytia hemisphaerica|type=transcript|length=12752bp|location=Sequence derived from alignment at scaffold_142:759794..772545+ (Clytia hemisphaerica)
TTTTCTTCTGTCAATTTCGATGGGAATGTGATCAGCAGGTTAGTGATGAC
TTTCCTTTcaacttttcagttttttcctCTTTAAACCGCTTGCTTTTTCA
ATTCAAAAGAgctttcctttttatttttcgaCTAGTTTTCGAACCTATTG
GAAGCAACCTGAACTGGATATCGGTACATTAAACAAATGAACTAGTACGC
ATTGGGTGAGCAGATCaaacgaaagaaaatttaaagtaGAGAAACTTGGC
AAAAACCGATTTCGCTTGACTGCCAACTTAGCCCGTAAGTTTAAAGGTAA
ACAAAATCAACACCCGATCAAATCCGAGGTAAAAAAACAGGAGCATTTTT
GGGCGAGAAACGACAGGACgaaatacattttaaaactcaCAATGCCTGTA
AGTTTTTGCTTATAACATTTTCACTTCATTGATTTTTAAGCTGTCATAAG
TCAGCTTTGTTTTCGCCTGTGAATCCTTAACTTAAGGGAAGTGGTTTTTT
TGCTTCTAACTTGCTTAATAACTTTCCCTATCATCTGAGGACCNTCCTAT
CATCTggcaaaacatatttttctgcTTGTGTATTTAAAATGGATATAGAA
TACATTACAGCCTGTGGCAGTGACTGCCTAACAAGTTGAAGCTACATTTT
TGCCCACCACTTAGATGTCTCAATCTTTGTAAAACTGTAAAGCTTAGCTG
GGAATGAGAAAGTCTAGCCAAACGTTGTTTTGCCGCCAGAGAAGAGAGAA
GTCAAATAGTGTTCACAAACGCCACACTGCTGACTGGATGCCCTGGGCCC
CTGGGCTGGCTGGGGACAAAACAGGGAAAATAATACTTTTCTCTCCCTGG
ACAAGAAGTAAACCATTCACATAAAGTGAATACGTTGTTGCAAGTAGTAG
ATTTAAGTAGGTCAAGTATTAGTAGGTTTGGACTNNNNNNNNNNNNNNNN
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NNNNNgatagctgtaatgtcaagatgtcaattaatgtaattaaaaagtgt
gagttgtaaaaataattaccttttattctggatcagttgctcatatttaa
aacgataacagaacagttttgtaataaaatgacttgtgcgggaaaaatac
gaaacaacttgggctggtttccatcaagaaacaaacagactaaattgcaa
aaatggtgcgaatttgaaaaaagggcggatgcggtagcacttaatttgaa
taacaaacatcgaatcaatgagcggcaactatcaacgccctctttacttT
ACCACCCATAATTCcagatgtttatttacggaaggcccgcaaccaagcca
agtgccagtgtaaagtaataaaaaccaggcttgattacgtaacgtttcaa
aatgaccacactcgtacacagacctcttttatattttcgtgtgctttcgg
aaatcaaaacatctcattactttttatgatgctgttactatatactgttg
tcatttatgacgttgtgcatattgcaataaaaaaatatgttttgttataa
gaagcaattattgttatttggttcgattggttcagtgtatcaaatctctN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcttcgttgcgtc
acagcgaaaggtttgtttttattttagtttgtatctttgaaagaccccat
cggatttaggcagtggtgtcggctttaggacctctcacagTATTGTTTTT
ACTATAGCATTTAAATTAGACCTTAAAAATCAAAGGGctgtcttgggaat
tgaatgacattTTGGTTGGGGAGAAGACATCACTTGGACCCCCCTATATc
tatatggaccccaatatggacctcattatggaccccaatatggaccacaT
TATGGACCCCCTACAAAAAGGCGGGAAAGCATTTTGGTTGAttaaagaag
ctttatatttgaccatCTGATCAttgttttgtaaaaataagtcattttgt
caacataaggacaatagaataattgatgagaatTGTCTTTAAAACTGCGC
TTCCCAGTGTTTGCCtcttttcaatatttatctatttatttcaaaggcat
ctcattcggtacaattaaaatatttggtgtaaatAAAGCTTGCAGGCACT
TTTAAagtgccctgtcaatatttttgtcgaaaagtgTTACTTTGTCAGGA
AAATGACAGGTAACGTCTTTCTCGTGGAAGAAACGTTCATACGNNNNNNN
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NNNNNNNNNNNNNNNAAAATTTATACTTTTAAACAATGCTGCTTtataaa
ttgaaaacaaaaattaattaaagacttttgattgaatgtaaaaataattg
aacttgAATTTTCTTAAATGagaacaatttaattttttttgaaaaattgc
aaaaattctgaaaaaaaacttaaaaaaccaCAACAAATTCTGATAAAGAT
Tcaagaaattattaaaattattaattttggtatcaatttactaaaaaaat
CTCAACTTTCAGACTGTATGCCACCTTTTTGGTGTTTTAGTACTTTATTA
CCTATGGACTATGGTACTGGGTATACCACAACCTCACTAAACATCGTGAT
GTCCTAGATTTTAGTATCGATCCCCCCTGACAGAGTGCAAATAAGTATTA
TTAAGAAATTTGTACTGCTTTTTATTGATATTCCAGGATATTCAATGTAT
GTATGTTACAGTGTCTTATTTTCTTTGTTGTTAGGCATATCACTCAAGCC
TCGAATCGCCAACTCAACTATGCAAGATGGCTTTACTTCCTGTCAACAGT
AAATTCAAGGGTCCAGCGCCACCAGGCAGTAGGTGTCACTACAAAAGCAC
TTTTCCCCCTCCAATTACCAATTAGATTCCTTTAGCAACAGTAGCATATA
GTCCTTGCAATAAAAGGTGTaatgaaaagtgtttttaatggGGCAACATG
ATTGAATATTATTTTGACTGatttaaagataattttaatCATGctgaaat
tgactttttttggGAATCTCAATAACTTTTCAACAGCAATTAAACATTCA
TTTCATAATAAGTGAAAGTGTCTTGATGTCTATCACAATTTGAAGTGTCA
ATATGCTTCCCACCCCTCTACAATACAAAGCTCTTGTTAGAATTGAAAAG
CATTAAAACTCAGATAAACTTTTGAAAACGCAgctatattttatttattt
tgacaaaTTATCATTATAGATGGAAGTCCGGACATCATTGATGAAACGCT
ACAATATTTCAAAGCTAACGtcttcttcaaaaattatgaaattaaggTAA
AATATAATTCATGCTTGCAGGCTTTACATTGATTTTTTAGATGTCAAATT
TTCCTTCTGATTTCACAGGATTCGTTTTTCATCAAACTACTACTTTGACT
TGCTAAATTGTTATTTTGTTTGTTGGAGGCAGGTTACTTTAAATCGAATA
CATTCATCAGTAATGGGGGAGGGTGTGTCTTCTCAAAAGTGTAATTTGTT
GATCTGATACTTAATCTAGCTCTTGTTTTAgtcaatagcgctccgcaacg
cacacgtcataattattacttttcactttttgacatttgaacCAGTTGCT
CTCACAATTCAAGATACAtgcaagttgttatatatcttttgtcaaatgat
gcaattaacgtgcaaaagagattaacgcaaaggttgaagGGATCGGGGCT
TGTACAAACACAttgagagtaatgattatgtcaaaaatgaaatctatttt
agattcagcgcggtgtgctacatgttttttttataagcatacaaaattct
gaaaatccgtaaaattccagccaaagaaagccaaaatcaggaaaaacatt
tttcgtaggctcaagtaatgcttgccatatgcttaatttttccccatatc
tgagcctatatgcttataagtgcaatgcttataaaaaaaaacatgtattt
ttgtATGCtgatatttttaataaaaagccTTTTCTAAATTCATCCATTCA
CATAACCAGTAGCTATGTTGTATCAAGTActgttttttattcactttTAG
TCGCCAGCAGATCGTGTGCTCATTTACTTGACTTTATACGTCACTGAGTG
CTTGAAAAAATTGCAAAGGGTAAGTTGAATCATCAAGCCAGTGTTCCACA
ATAAATAGTGGTTAAACGCTTTTCAAGATGTGTTTGAGTTGATTATTTGA
GTTTAATCTTAAAACTGTATGTTTCAAGATGTGGCATCAGATCTACAATC
TAATGAGCTTTAGTCCGCTCGCTTCCTCATTCTTCCCCTTTTAAATTTCT
TGTGAATTCGTAAAAAATTGGGCAACGGGATAAGAAATACCAATACAAAA
ACATGAATTTCATCTTTTCTATTGTTTCATACAGTAAGCTTCTTTTGTCT
GAcgaaatgtttacattttactacttcaATATAACTACTAACATAACAAC
TTTTGCTTTTCTTGCTCAGATTGGTTCAAAAGAAGAAGCAAAGAAAGAAA
TGGCCACTTTGGCCATCACTAACTTCGATATTCCCGGGGATGCAAAGTTC
CCTTTGAATGCGCTGTACGGCAAACCAAAAGACAGAACTGAAGCTGGTTA
GTATTGTCTAGGACATAGTCTTATCAAGAAAATTTCGGTTGAGCTTTATT
TTGAATCAATAATCTTACCAGAATCTACTAGAATAATTTTCTGCTCATCG
TTAACAAGTTATACTAATGTcctatttgttttattttctgtgTCATTTTT
TATACTTACTTGCTCTCAAATCAATGCTTGTTGTTGCTGTTTTTGATGTA
ATAGCTATCACACGGTaccgagtacaatatgggatatatttttcgagttc
agaatTTCGTCATACTTttcgagcctttaggcgaggaaaatattgaaaag
gcTGAACGATATTTTTCATGTTAATGTCAAATAATTCAGTTTCCTATCAG
AAATATCTACAGAATCCTTTTCCAGCCGAAACATTgattaaataaagaag
aaaacaaattccGAATAGGTGCATCTTCgagaaactcaaaatttaagtta
tcaaaaagaaTAACACATGATGTAAAATATGGTCGATATTTCGATTCACT
TGCTAAATCATTATCAAGACAGAGTAAAATGAAATTCTAAAAGCATTACT
TTATGTACAAGTTCAGTAAAAATTAGAAAAAAATTATGAAATGCACCAAG
GGAATAAAACGATTgctgaaacaaaagaaagaaggaCTAAGGGGAATAGA
GACGCAATAGAAGCGATATGTGTCAatgtaataaaatataattaatcAAA
ATAATTGAAGCTCCTTGGAGGCCTTAAGTCCATGATTCAAGGTAGGCTTC
TTTTGTTTAATACAAAAGGCTTCTCTAAATTCTAATGTATATGTATCACC
AGTATCAATTACTTTGGTGTTGTCTCTGattaaatttaatttgaatTCAT
CACCATCGACATCATTTAAAAGGAGGTTATTGATACCAAATAAGTGTTCA
CATTCCAGGCAATTATCAACGTGCGACTTGATTGATGATTCGTCACGTGT
CGCATGTTCCTTTGTTCTCTGGGAGAGGGTACGTTTGGTCAAACCGATGT
AAGATGCGGTACAACCGGGGCAGGCGAATTCATAAATAACGTACGACTTG
CTAAGACTTTTTATCTTATCTTTCATATTTGTGAAGAAAGAGAGTTTAGT
CACTGAATATTTTGTTACAAAATTTACCCTTTCTTTGGTACAACGACTAA
GTTTTCGCCAACATTGCTTTACAAGTTGATCACCAACGTCACCAGCATAA
TGAACATTAAAGTAtaccttttttcttttgtcatcatcggTATTGGGTTT
GTCTTTAGGATTAGACAGGACACGTTTAATCATTGCATTGATGACGGATT
TTGGATATTTGTTCCAGGAAGCGAATTTCTTTATCATCTCGAGTTCAGGA
TGAAGCTTGTTCTTTGAGCAGAGTTTCTTTGCCCTCGTGATCAGAGATCG
CATCCATGCAGTTTTCCATTTCCAGGGTACGAAAGAGTGTGCTGGTTGGT
ACTGACCAGTGTGTGTGTCTTTACGAAAGATAGCTATTCCATCGGGACAG
ATTTCGAGATCGAGAAAATGAGGTACTTGATTTTCAAAGAGGTCGACAGT
GAATTGAAGATTTTTATCAAACTTGTTGAACTTTTCAAGAATGGATTCTA
TATCAGAACGTTTCACTAAGAGTAATGTATCATCGACGTACCTTGCATAA
AACTTAATTGTTCCTTTATTGATGAGTTTAGAGACGACTCGTTTTTCCAG
TTCGGTCATGATAATATTTGCTAAGACGGGACCAAGTGATGCACCCATGC
TGACTCCATCAGTTTGCTCATAGATCTGATTGTTGTACAGGAAAGCAGTC
TTTTGGCATGTatctaagatttttttttttctaattttttctaattttta
ctgAACTTGTACATAAAGTAatgcttttagaatttcattttactcTGTCT
TGATAATGATTTAGCAAGTGAATCGAAATATCGACCATATTTTACATCAT
GTGTTAttctttttgataacttaaattttgagtttctcGAAGATGCACCT
ATTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGGGGGGGGGGCTATTTGTTTAGGTCTGTTGGCTGGGGG
CTAACCTAACAACTTTTTCCAAGaactaagaaatttttctttgaacattt
tggtattttgtttgTGTAATAATGAAGCCGTACTATTGACGTTTGTTGat
tagaatttcaaaagaagacATTAAACATTTTGTATCTCTTTCTCTTGTGT
GGATGTGGATCTCTTGTATTTTGGTAGGGGGGGGGCTgtctatttcgaat
tttggtggggGCTAaatctcaggggggggggggggaaatggggggggggg
ggggggctgaacctTCAGGGGGGCTTCAACCCCTCTGCACTCTATAAGGT
TAATATTCTTTACTTTTACATGGGACCTCTGCTAAcatctttgttgtttt
catACCCAATACTTTTTTTATAGATCAAACCCGCATGTATTTCACTCAAC
TCCGTCAAGAACTCGGCCAAAGAATCTTGGATAAAGTTTATGAACCCAAC
ACCAACAAACCATCCAAGGTATATACTGGTTTATTTTCTTGTCCTCTTTA
TTTCCCTATCGTGTCAGCTATGTAGAGTTTTTGCTACTTATCCTCTGTGA
AGTCTAAAGGTTAGATAAATTTTGAGCGTCAATATGTTAAGCTCGTGATA
TTGCAGAGATGGGGGATAGAGTGTAGTATTCAGGATTTTAGTTAAAAGGT
AGATATTGCATTTATGGAGAGGAATATTTGCTGCACTTCaacgcaatttt
catatcagCGAGTGTTCTTTCTAGGATTTCCACCTGCAGTGTCCTGAGTA
TTTCCAAATGATTATACCCATATCATTTAAATATATTAATTAGgcttttt
caaacaatcaacCATGCATCCCATACTGAAACCCGCATTCCATTCACCTA
ATATCGAAGAGGTCTTCTCTGAATTAAGTGAATTACTAGCCCCTTGACCC
CTGACCCTCAATTTGCCAGCTCTGGAACCTTCTCCCTgacttctttttct
ttgataatCTTAccatccaaaaggaaatatcaAAAGGCCTCATGTGAAAG
GATTTAAATAACTCTTCACTTGTATCCATAACTTTCGCCAGTGTCCTGAG
CTTATAAACAATGATAATTATTTAGTATTGAGAGACCTCATTATGAAAGG
GTGAATACGTTTGTTATTTATGCAACTCTGCACTTGCCATAACCACGCTT
CATTGTTATTAGAATTATCTGCTTTTATTTGCACTCCTATGGAAACTCCA
GTGTACTTACGCTTATGACAGCCATTCAGAAGTCAGGTTTCTCAGAGTTG
TTACATGTTAAAAGCGCATGCTCTACTGGTtaatattgaaagttttttca
ttttgtcattcaatCATTCATATTTATTCATATTTATATTGTACCTCTGC
CACCTGACACGCGTCGTTTCATTTGGTGTGATGCTGGTTGATGTTGTTTT
TAGAAACGAGCGAGTCAGAATGAGTATTTTTCCAACAAATGATCTTCTTA
AAAACATCCATTGCGCTACGAATCAAGATCTTTGTGATTGTAGATATATC
AATATAGAAGCTCTTGTGTACCCAGACTTCGAGATAATTGTTAATCAAGT
GTCACTTAATACCATAGTATACATACCATACAGTACCACAGTATAAAAAA
TCCAGACAGAAATTTGCGAAGAAAGAACTCAATCTTGATCACAAGCATct
cattttgttttcatttcgtTCTCTTAGTGGTGGATGTGCTTCGTTAAACG
ACGATTCATGGATAAATCTCTCTCAGGACCAGGAATGTAAACAGGGCCTT
ATTCACACCATAATAACATCTATCTTGTACACGCTTGACNTAAACAGGGC
CTTATTCATACCATAATAACATCTATCTTGCACACGCTTGAATTCTGTCT
AAAATACTCGTTGTTTAGGGGTATAAATTATGAAATGTAGAATAatttaa
tttgtattttttgatttttttttgttcataaatttttctgatCTTTATAA
ATGTTTACTTTCTCTTTACCACTTAATTGATTCATGATCTCAGACTGTCT
ATTTCTCAATTGTAAAGTCATTTCTTTACGATCGATTAATAAAAGCCTCC
GAGCCTGATCGGGAGCCTGGTTCTGGAAGAAGGAATTATTTAGTAAGTCA
AGTTCAATGAAAactctttttcgattttttgtattacagttttttcacaa
aaatattttaaatcattttaaactttcaaattcaagaaaagtGAAAATGT
AC

Coding sequence (CDS) from alignment at scaffold_142:759794..772545+

>TCONS_00048315 ID=TCONS_00048315|Name=TCONS_00048315|organism=Clytia hemisphaerica|type=CDS|length=3717bp|location=Sequence derived from alignment at scaffold_142:759794..772545+ (Clytia hemisphaerica)
ATGCCTGCATATCACTCAAGCCTCGAATCGCCAACTCAACTATGCAAGAT
GGCTTTACTTCCTGTCAACAGTAAATTCAAGGGTCCAGCGCCACCAGGCA
ATGGAAGTCCGGACATCATTGATGAAACGCTACAATATTTCAAAGCTAAC
GtcttcttcaaaaattatgaaattaagTCGCCAGCAGATCGTGTGCTCAT
TTACTTGACTTTATACGTCACTGAGTGCTTGAAAAAATTGCAAAGGATTG
GTTCAAAAGAAGAAGCAAAGAAAGAAATGGCCACTTTGGCCATCACTAAC
TTCGATATTCCCGGGGATGCAAAGTTCCCTTTGAATGCGCTGTACGGCAA
ACCAAAAGACAGAACTGAAGCTGATCAAACCCGCATGTATTTCACTCAAC
TCCGTCAAGAACTCGGCCAAAGAATCTTGGATAAAGTTTATGAACCCAAC
ACCAACAAACCATCCAAGTGGTGGATGTGCTTCGTTAAACGACGATTCAT
GGATAAATCTCTCTCAGGACCAGGAATGTAAATGCCTGCATATCACTCAA
GCCTCGAATCGCCAACTCAACTATGCAAGATGGCTTTACTTCCTGTCAAC
AGTAAATTCAAGGGTCCAGCGCCACCAGGCAATGGAAGTCCGGACATCAT
TGATGAAACGCTACAATATTTCAAAGCTAACGtcttcttcaaaaattatg
aaattaagTCGCCAGCAGATCGTGTGCTCATTTACTTGACTTTATACGTC
ACTGAGTGCTTGAAAAAATTGCAAAGGATTGGTTCAAAAGAAGAAGCAAA
GAAAGAAATGGCCACTTTGGCCATCACTAACTTCGATATTCCCGGGGATG
CAAAGTTCCCTTTGAATGCGCTGTACGGCAAACCAAAAGACAGAACTGAA
GCTGATCAAACCCGCATGTATTTCACTCAACTCCGTCAAGAACTCGGCCA
AAGAATCTTGGATAAAGTTTATGAACCCAACACCAACAAACCATCCAAGT
GGTGGATGTGCTTCGTTAAACGACGATTCATGGATAAATCTCTCTCAGGA
CCAGGAATGTAAATGCCTGCATATCACTCAAGCCTCGAATCGCCAACTCA
ACTATGCAAGATGGCTTTACTTCCTGTCAACAGTAAATTCAAGGGTCCAG
CGCCACCAGGCAATGGAAGTCCGGACATCATTGATGAAACGCTACAATAT
TTCAAAGCTAACGtcttcttcaaaaattatgaaattaagTCGCCAGCAGA
TCGTGTGCTCATTTACTTGACTTTATACGTCACTGAGTGCTTGAAAAAAT
TGCAAAGGATTGGTTCAAAAGAAGAAGCAAAGAAAGAAATGGCCACTTTG
GCCATCACTAACTTCGATATTCCCGGGGATGCAAAGTTCCCTTTGAATGC
GCTGTACGGCAAACCAAAAGACAGAACTGAAGCTGATCAAACCCGCATGT
ATTTCACTCAACTCCGTCAAGAACTCGGCCAAAGAATCTTGGATAAAGTT
TATGAACCCAACACCAACAAACCATCCAAGTGGTGGATGTGCTTCGTTAA
ACGACGATTCATGGATAAATCTCTCTCAGGACCAGGAATGTAAATGCCTG
CATATCACTCAAGCCTCGAATCGCCAACTCAACTATGCAAGATGGCTTTA
CTTCCTGTCAACAGTAAATTCAAGGGTCCAGCGCCACCAGGCAATGGAAG
TCCGGACATCATTGATGAAACGCTACAATATTTCAAAGCTAACGtcttct
tcaaaaattatgaaattaagTCGCCAGCAGATCGTGTGCTCATTTACTTG
ACTTTATACGTCACTGAGTGCTTGAAAAAATTGCAAAGGATTGGTTCAAA
AGAAGAAGCAAAGAAAGAAATGGCCACTTTGGCCATCACTAACTTCGATA
TTCCCGGGGATGCAAAGTTCCCTTTGAATGCGCTGTACGGCAAACCAAAA
GACAGAACTGAAGCTGATCAAACCCGCATGTATTTCACTCAACTCCGTCA
AGAACTCGGCCAAAGAATCTTGGATAAAGTTTATGAACCCAACACCAACA
AACCATCCAAGTGGTGGATGTGCTTCGTTAAACGACGATTCATGGATAAA
TCTCTCTCAGGACCAGGAATGTAAATGCCTGCATATCACTCAAGCCTCGA
ATCGCCAACTCAACTATGCAAGATGGCTTTACTTCCTGTCAACAGTAAAT
TCAAGGGTCCAGCGCCACCAGGCAATGGAAGTCCGGACATCATTGATGAA
ACGCTACAATATTTCAAAGCTAACGtcttcttcaaaaattatgaaattaa
gTCGCCAGCAGATCGTGTGCTCATTTACTTGACTTTATACGTCACTGAGT
GCTTGAAAAAATTGCAAAGGATTGGTTCAAAAGAAGAAGCAAAGAAAGAA
ATGGCCACTTTGGCCATCACTAACTTCGATATTCCCGGGGATGCAAAGTT
CCCTTTGAATGCGCTGTACGGCAAACCAAAAGACAGAACTGAAGCTGATC
AAACCCGCATGTATTTCACTCAACTCCGTCAAGAACTCGGCCAAAGAATC
TTGGATAAAGTTTATGAACCCAACACCAACAAACCATCCAAGTGGTGGAT
GTGCTTCGTTAAACGACGATTCATGGATAAATCTCTCTCAGGACCAGGAA
TGTAAATGCCTGCATATCACTCAAGCCTCGAATCGCCAACTCAACTATGC
AAGATGGCTTTACTTCCTGTCAACAGTAAATTCAAGGGTCCAGCGCCACC
AGGCAATGGAAGTCCGGACATCATTGATGAAACGCTACAATATTTCAAAG
CTAACGtcttcttcaaaaattatgaaattaagTCGCCAGCAGATCGTGTG
CTCATTTACTTGACTTTATACGTCACTGAGTGCTTGAAAAAATTGCAAAG
GATTGGTTCAAAAGAAGAAGCAAAGAAAGAAATGGCCACTTTGGCCATCA
CTAACTTCGATATTCCCGGGGATGCAAAGTTCCCTTTGAATGCGCTGTAC
GGCAAACCAAAAGACAGAACTGAAGCTGATCAAACCCGCATGTATTTCAC
TCAACTCCGTCAAGAACTCGGCCAAAGAATCTTGGATAAAGTTTATGAAC
CCAACACCAACAAACCATCCAAGTGGTGGATGTGCTTCGTTAAACGACGA
TTCATGGATAAATCTCTCTCAGGACCAGGAATGTAAATGCCTGCATATCA
CTCAAGCCTCGAATCGCCAACTCAACTATGCAAGATGGCTTTACTTCCTG
TCAACAGTAAATTCAAGGGTCCAGCGCCACCAGGCAATGGAAGTCCGGAC
ATCATTGATGAAACGCTACAATATTTCAAAGCTAACGtcttcttcaaaaa
ttatgaaattaagTCGCCAGCAGATCGTGTGCTCATTTACTTGACTTTAT
ACGTCACTGAGTGCTTGAAAAAATTGCAAAGGATTGGTTCAAAAGAAGAA
GCAAAGAAAGAAATGGCCACTTTGGCCATCACTAACTTCGATATTCCCGG
GGATGCAAAGTTCCCTTTGAATGCGCTGTACGGCAAACCAAAAGACAGAA
CTGAAGCTGATCAAACCCGCATGTATTTCACTCAACTCCGTCAAGAACTC
GGCCAAAGAATCTTGGATAAAGTTTATGAACCCAACACCAACAAACCATC
CAAGTGGTGGATGTGCTTCGTTAAACGACGATTCATGGATAAATCTCTCT
CAGGACCAGGAATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030752XLOC_030752Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048315-proteinTCONS_00048315-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048315-exon-scaffold_142-1491911889:759794..760190TCONS_00048315-exon-scaffold_142-1491911889:759794..760190Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1510915933:759794..760190TCONS_00048315-exon-scaffold_142-1510915933:759794..760190Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1575043694:759794..760190TCONS_00048315-exon-scaffold_142-1575043694:759794..760190Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1491911889:766228..766321TCONS_00048315-exon-scaffold_142-1491911889:766228..766321Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1510915933:766228..766321TCONS_00048315-exon-scaffold_142-1510915933:766228..766321Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1575043694:766228..766321TCONS_00048315-exon-scaffold_142-1575043694:766228..766321Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1491911889:766713..766789TCONS_00048315-exon-scaffold_142-1491911889:766713..766789Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1510915933:766713..766789TCONS_00048315-exon-scaffold_142-1510915933:766713..766789Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1575043694:766713..766789TCONS_00048315-exon-scaffold_142-1575043694:766713..766789Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1491911889:767544..767612TCONS_00048315-exon-scaffold_142-1491911889:767544..767612Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1510915933:767544..767612TCONS_00048315-exon-scaffold_142-1510915933:767544..767612Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1575043694:767544..767612TCONS_00048315-exon-scaffold_142-1575043694:767544..767612Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1491911889:767963..768089TCONS_00048315-exon-scaffold_142-1491911889:767963..768089Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1510915933:767963..768089TCONS_00048315-exon-scaffold_142-1510915933:767963..768089Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1575043694:767963..768089TCONS_00048315-exon-scaffold_142-1575043694:767963..768089Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1491911889:770717..770811TCONS_00048315-exon-scaffold_142-1491911889:770717..770811Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1510915933:770717..770811TCONS_00048315-exon-scaffold_142-1510915933:770717..770811Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1575043694:770717..770811TCONS_00048315-exon-scaffold_142-1575043694:770717..770811Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1491911889:772021..772110TCONS_00048315-exon-scaffold_142-1491911889:772021..772110Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1510915933:772021..772110TCONS_00048315-exon-scaffold_142-1510915933:772021..772110Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1575043694:772021..772110TCONS_00048315-exon-scaffold_142-1575043694:772021..772110Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1491911889:772164..772545TCONS_00048315-exon-scaffold_142-1491911889:772164..772545Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1510915933:772164..772545TCONS_00048315-exon-scaffold_142-1510915933:772164..772545Clytia hemisphaericaexon
TCONS_00048315-exon-scaffold_142-1575043694:772164..772545TCONS_00048315-exon-scaffold_142-1575043694:772164..772545Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:759794..772545 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
585.288	630.289	438.824	402.42	209.284	166.421	223.546	233.638	252.304	231.893	198.168	197.131	183.546	185.349	213.196	213.126	237.3	231.206	215.66	227.467	219.936	216.209	283.804	265.402	148.66	147.858	256.026	218.035	316.67	309.621
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007204ARPC3
Vocabulary: Biological Process
TermDefinition
GO:0030833regulation of actin filament polymerization
GO:0034314Arp2/3 complex-mediated actin nucleation
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO:0005885Arp2/3 protein complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034314 Arp2/3 complex-mediated actin nucleation
biological_process GO:0030833 regulation of actin filament polymerization
cellular_component GO:0005885 Arp2/3 protein complex
cellular_component GO:0005856 cytoskeleton
Blast
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BLAST of TCONS_00048315 vs. Swiss-Prot (Human)
Match: ARPC3 (Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 233.802 bits (595), Expect = 3.541e-74
Identity = 110/177 (62.15%), Postives = 134/177 (75.71%), Query Frame = 2 
Query:  392 MPAYHSSLESPTQ--LCKMALLPVNSKFKGPAPPGNGSPDIIDETLQYFKANVFFKNYEIKSPADRVLIYLTLYVTECLKKLQRIGSKEEAKKEMATLAITNFDIPGDAKFPLNALYGKPKDRTEADQTRMYFTQLRQELGQRILDKVYEPNTNKPSKWWMCFVKRRFMDKSLSGPG 916
            MPAYHSSL  P    +  MALLP+ S+FKGPAP      DI+DE + YFKANVFFKNYEIK+ ADR LIY+TLY++ECLKKLQ+  SK + +KEM TL ITNF IPG+  FPLNA+Y KP ++ E +  R Y  QLRQE G R+ +KV++P  +KPSKWW CFVKR+FM+KSLSGPG
Sbjct:    1 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPG 177
The following BLAST results are available for this feature:
BLAST of TCONS_00048315 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARPC33.541e-7462.15Actin-related protein 2/3 complex subunit 3 OS=Hom... [more]
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