TCONS_00048315-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048315-protein
Unique NameTCONS_00048315-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length176

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048315-protein ID=TCONS_00048315-protein|Name=TCONS_00048315-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MPAYHSSLESPTQLCKMALLPVNSKFKGPAPPGNGSPDIIDETLQYFKAN
VFFKNYEIKSPADRVLIYLTLYVTECLKKLQRIGSKEEAKKEMATLAITN
FDIPGDAKFPLNALYGKPKDRTEADQTRMYFTQLRQELGQRILDKVYEPN
TNKPSKWWMCFVKRRFMDKSLSGPGM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030752XLOC_030752Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048315TCONS_00048315Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007204ARPC3
Vocabulary: Biological Process
TermDefinition
GO:0030833regulation of actin filament polymerization
GO:0034314Arp2/3 complex-mediated actin nucleation
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO:0005885Arp2/3 protein complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034314 Arp2/3 complex-mediated actin nucleation
biological_process GO:0030833 regulation of actin filament polymerization
cellular_component GO:0005885 Arp2/3 protein complex
cellular_component GO:0005856 cytoskeleton
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007204Actin-related protein 2/3 complex subunit 3PFAMPF04062P21-Arccoord: 1..171
e-value: 4.5E-76
score: 254.6
IPR007204Actin-related protein 2/3 complex subunit 3GENE3D1.10.1760.10coord: 1..172
e-value: 5.4E-79
score: 263.5
IPR007204Actin-related protein 2/3 complex subunit 3PIRSFPIRSF016315p21-ARCcoord: 1..171
e-value: 1.7E-76
score: 253.9
IPR007204Actin-related protein 2/3 complex subunit 3SUPERFAMILY69060Arp2/3 complex 21 kDa subunit ARPC3coord: 3..172

Blast
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BLAST of TCONS_00048315-protein vs. Swiss-Prot (Human)
Match: ARPC3 (Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 233.032 bits (593), Expect = 3.100e-79
Identity = 110/177 (62.15%), Postives = 134/177 (75.71%), Query Frame = 0 
Query:    1 MPAYHSSLESPTQ--LCKMALLPVNSKFKGPAPPGNGSPDIIDETLQYFKANVFFKNYEIKSPADRVLIYLTLYVTECLKKLQRIGSKEEAKKEMATLAITNFDIPGDAKFPLNALYGKPKDRTEADQTRMYFTQLRQELGQRILDKVYEPNTNKPSKWWMCFVKRRFMDKSLSGPG 175
            MPAYHSSL  P    +  MALLP+ S+FKGPAP      DI+DE + YFKANVFFKNYEIK+ ADR LIY+TLY++ECLKKLQ+  SK + +KEM TL ITNF IPG+  FPLNA+Y KP ++ E +  R Y  QLRQE G R+ +KV++P  +KPSKWW CFVKR+FM+KSLSGPG
Sbjct:    1 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPG 177
The following BLAST results are available for this feature:
BLAST of TCONS_00048315-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARPC33.100e-7962.15Actin-related protein 2/3 complex subunit 3 OS=Hom... [more]
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