TCONS_00047620 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047620
Unique NameTCONS_00047620
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047620 ID=TCONS_00047620|Name=TCONS_00047620|organism=Clytia hemisphaerica|type=transcript|length=638bp
GAAAAATGACCTACAAAAGTTAAAAGAACATACTTACAACTTTGAAAACA
TATCAAAAGATAAACAACTATTCAAATCAGAAACAGGATTAGAAGTTGAA
TCCTTTGAAATTCTATATGAAATGTTAAACCCTggtgaaaaatgtgaaaa
tgtaaaaatgtaCGAATCTAAACAAAATGAGCAGAGGAATGATCCTAATG
TATTGAGGTCACCTACTACCCCTGGGTCCTATGAGAGTTATAGTGCAAAA
CCTGGACCCACTGTCAAATTAAATGCTAAAGATCAATTGTTTTTATATAT
GACATGGTTAAAAGGTGGATTTAGTCTTAAACATTCATCTTGGCTGTTTG
AGTTACCAAAATCGACTGTCTCAAGATATCTTATAACATGGTCgaatttc
ttatatttttcactTGGCTCTTTACCGATTTGGCCCTCAAAAAGGGTAGT
TAAAGAAACCATGCCTACTACTTTCAAAGATACCTATCCTAAAACTCGCT
GTATTATAGACTGTACCGAACTTTTTTGTCAAAGACCCTCTTCATTGTCA
ATCCAAAGTCATATGTATTCACAGTACAAGAATCATGTGACCTATAAAGG
ACTGGTAGGAATTTCACCATCTGGTGCAGTGACATTTG
Run BLAST on NCBI

protein sequence of TCONS_00047620-protein

>TCONS_00047620-protein ID=TCONS_00047620-protein|Name=TCONS_00047620-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
KNDLQKLKEHTYNFENISKDKQLFKSETGLEVESFEILYEMLNPGEKCEN
VKMYESKQNEQRNDPNVLRSPTTPGSYESYSAKPGPTVKLNAKDQLFLYM
TWLKGGFSLKHSSWLFELPKSTVSRYLITWSNFLYFSLGSLPIWPSKRVV
KETMPTTFKDTYPKTRCIIDCTELFCQRPSSLSIQSHMYSQYKNHVTYKG
LVGISPSGAVTF
Run BLAST on NCBI

transcript from alignment at scaffold_132:337430..338067

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047620 ID=TCONS_00047620|Name=TCONS_00047620|organism=Clytia hemisphaerica|type=transcript|length=638bp|location=Sequence derived from alignment at scaffold_132:337430..338067 (Clytia hemisphaerica)
CAAATGTCACTGCACCAGATGGTGAAATTCCTACCAGTCCTTTATAGGTC
ACATGATTCTTGTACTGTGAATACATATGACTTTGGATTGACAATGAAGA
GGGTCTTTGACAAAAAAGTTCGGTACAGTCTATAATACAGCGAGTTTTAG
GATAGGTATCTTTGAAAGTAGTAGGCATGGTTTCTTTAACTACCCTTTTT
GAGGGCCAAATCGGTAAAGAGCCAagtgaaaaatataagaaattcGACCA
TGTTATAAGATATCTTGAGACAGTCGATTTTGGTAACTCAAACAGCCAAG
ATGAATGTTTAAGACTAAATCCACCTTTTAACCATGTCATATATAAAAAC
AATTGATCTTTAGCATTTAATTTGACAGTGGGTCCAGGTTTTGCACTATA
ACTCTCATAGGACCCAGGGGTAGTAGGTGACCTCAATACATTAGGATCAT
TCCTCTGCTCATTTTGTTTAGATTCGtacatttttacattttcacatttt
tcaccAGGGTTTAACATTTCATATAGAATTTCAAAGGATTCAACTTCTAA
TCCTGTTTCTGATTTGAATAGTTGTTTATCTTTTGATATGTTTTCAAAGT
TGTAAGTATGTTCTTTTAACTTTTGTAGGTCATTTTTC

Coding sequence (CDS) from alignment at scaffold_132:337430..338067

>TCONS_00047620 ID=TCONS_00047620|Name=TCONS_00047620|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_132:337430..338067 (Clytia hemisphaerica)
AAATGTCACTGCACCAGATGGTGAAATTCCTACCAGTCCTTTATAGGTCA
CATGATTCTTGTACTGTGAATACATATGACTTTGGATTGACAATGAAGAG
GGTCTTTGACAAAAAAGTTCGGTACAGTCTATAATACAGCGAGTTTTAGG
ATAGGTATCTTTGAAAGTAGTAGGCATGGTTTCTTTAACTACCCTTTTTG
AGGGCCAAATCGGTAAAGAGCCAagtgaaaaatataagaaattcGACCAT
GTTATAAGATATCTTGAGACAGTCGATTTTGGTAACTCAAACAGCCAAGA
TGAATGTTTAAGACTAAATCCACCTTTTAACCATGTCATATATAAAAACA
ATTGATCTTTAGCATTTAATTTGACAGTGGGTCCAGGTTTTGCACTATAA
CTCTCATAGGACCCAGGGGTAGTAGGTGACCTCAATACATTAGGATCATT
CCTCTGCTCATTTTGTTTAGATTCGtacatttttacattttcacattttt
caccAGGGTTTAACATTTCATATAGAATTTCAAAGGATTCAACTTCTAAT
CCTGTTTCTGATTTGAATAGTTGTTTATCTTTTGATATGTTTTCAAAGTT
GTAAGTATGTTCTTTTAACTTTTGTAGGTCATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030334XLOC_030334Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047620-proteinTCONS_00047620-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047620-exon-scaffold_132-1491911889:337430..338067TCONS_00047620-exon-scaffold_132-1491911889:337430..338067Clytia hemisphaericaexon
TCONS_00047620-exon-scaffold_132-1510915933:337430..338067TCONS_00047620-exon-scaffold_132-1510915933:337430..338067Clytia hemisphaericaexon
TCONS_00047620-exon-scaffold_132-1575043694:337430..338067TCONS_00047620-exon-scaffold_132-1575043694:337430..338067Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_132supercontigscaffold_132:337430..338067 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.111524	0	0	0	0.0696886	0	0	0.0550769	0	0	0	0	0	0	0	0	0	0	0.0948207	0	0	0.158486	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom
IPR027805Transposase_HTH_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047620 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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