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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047018 ID=TCONS_00047018|Name=TCONS_00047018|organism=Clytia hemisphaerica|type=transcript|length=3796bpRun BLAST on NCBI protein sequence of TCONS_00047018-protein >TCONS_00047018-protein ID=TCONS_00047018-protein|Name=TCONS_00047018-protein|organism=Clytia hemisphaerica|type=polypeptide|length=866bp MPTQLPPKENTLFKRILKCYEQKQYKNGLKFCKQILSNPKFSEHGETLAMRun BLAST on NCBI transcript from alignment at scaffold_120:98068..107133- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047018 ID=TCONS_00047018|Name=TCONS_00047018|organism=Clytia hemisphaerica|type=transcript|length=9066bp|location=Sequence derived from alignment at scaffold_120:98068..107133- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_120:98068..107133- >TCONS_00047018 ID=TCONS_00047018|Name=TCONS_00047018|organism=Clytia hemisphaerica|type=CDS|length=44217bp|location=Sequence derived from alignment at scaffold_120:98068..107133- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047018 vs. Swiss-Prot (Human)
Match: NAA15 (N-alpha-acetyltransferase 15, NatA auxiliary subunit OS=Homo sapiens GN=NAA15 PE=1 SV=1) HSP 1 Score: 869.381 bits (2245), Expect = 0.000e+0 Identity = 458/843 (54.33%), Postives = 604/843 (71.65%), Query Frame = 2
Query: 56 MP-TQLPPKENTLFKRILKCYEQKQYKNGLKFCKQILSNPKFSEHGETLAMKGLTLNYLGKKDEAYDYVKRGLKNDLRSHVCWHVYGLLQRADHKYDEAIKCYRNALKWDKDNLQILRDLSLLQVQMRDLEGFRDTRYQLLKVRPAQRQSWIGYSISYYLLGQYDMAFTVMEEFRKTLFQDNQP-KVDIEHTEMLLYQNLILRNQNKDQESIDHFDKYESVMTDKLKVQEIKALQFLKLNKNDEAESIYRELIKRNPENNAYYEGVEKCMKAQERLNDASRMEIYTIYRKKYPKSETPKRLPLNFIKGNLFRSLVDEYLRVALKKGVPPLFTSLRSLYQDKEKAKIVEDLVLGYSSALESDQKFDKKDDVTQD-PTVLLWTNFYLAQHFDHFRNIDKALEYINLVLDHTPTLIEGYMVKAKIYKHAGCNQEAAKWMDEGRSLDTADRYVNSKCAKYLLRCNEVKKAIETCGLFTKEGILPDDDLDSMQCMWFGIECASAHQRKGEIGEALRKCHQIERNFSEIVEDQFDFHTYCMRKVTLCAYIRLLQLEDVIRSHAFYFKAAKLAIECYLALHDKPSLSMDDADQMNKEQMSEKEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------XXXIYPKELVKCTKPLDEAIKFLVPLQTLAKERIETHLMAFEIYYRKGKPLLMLQSIKRAFNCNPTDPRLHECIVRFLLRVRSEHDNYNATVNTVLDREIKQIVKEDDLQSYTNQFLDRNRNSFLARVAVSKSLYNIDKKYKSNALAL-LDLEGDYEDLTLQECINVYKGFQNGDFGATSDDIESYRVKCAKRFKYADLF 2548
MP LPPKEN LFKRIL+CYE KQY+NGLKFCKQILSNPKF+EHGETLAMKGLTLN LGKK+EAY+ V+RGL+NDL+SHVCWHVYGLLQR+D KYDEAIKCYRNALKWDKDNLQILRDLSLLQ+QMRDLEG+R+TRYQLL++RPAQR SWIGY+I+Y+LL Y+MA ++EEFRKT Q P KVD E++E+LLYQN +LR +E+++H YE + DKL V+E K L+L + ++A +YR L +RNPEN AYY+G+EK +K L R++IY KYP+ P+RLPLNF+ G F+ +D++LR+ KG PP+F +LRSLY+DKEK I+E+LV+GY ++L+S + F+ DD ++ PT LLW +YLAQH+D ALEYIN ++ TPTLIE ++VKAKIYKHAG +EAA+WMDE ++LDTADR++NSKCAKY+L+ N +K+A E C FT+EG ++L+ MQCMWF ECA A++ + GEAL+KCH+IER+F EI +DQFDFHTYCMRK+TL +Y+ LL+LEDV+R H FYFKAA++AIE YL LHD P + + + MS+KE KKL++KQRRAQKK Q+EEEKK E ++ + + KK++ K ++ P++L K PL+EAIKFL PL+ L K +IETHL AFEIY+RK K LLMLQS+KRAF + + P LHEC++R E + + TV TVL +E+ ++ + +++ FL RN +S R++ +K +Y +D + A+ L L+ + LQ C+ V + +G G + E YR C K F YA F
Sbjct: 1 MPAVSLPPKENALFKRILRCYEHKQYRNGLKFCKQILSNPKFAEHGETLAMKGLTLNCLGKKEEAYELVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPAQRASWIGYAIAYHLLEDYEMAAKILEEFRKT--QQTSPDKVDYEYSELLLYQNQVLREAGLYREALEHLCTYEKQICDKLAVEETKGELLLQLCRLEDAADVYRGLQERNPENWAYYKGLEKALKPANML---ERLKIYEEAWTKYPRGLVPRRLPLNFLSGEKFKECLDKFLRMNFSKGCPPVFNTLRSLYKDKEKVAIIEELVVGYETSLKSCRLFNPNDDGKEEPPTTLLWVQYYLAQHYDKIGQPSIALEYINTAIESTPTLIELFLVKAKIYKHAGNIKEAARWMDEAQALDTADRFINSKCAKYMLKANLIKEAEEMCSKFTREGTSAVENLNEMQCMWFQTECAQAYKAMNKFGEALKKCHEIERHFIEITDDQFDFHTYCMRKITLRSYVDLLKLEDVLRQHPFYFKAARIAIEIYLKLHDNPLTDENKEHEADTANMSDKELKKLRNKQRRAQKKAQIEEEKKNAEKEKQQRNQKKKKDDDDEEIGGPKEELIPEKLAKVETPLEEAIKFLTPLKNLVKNKIETHLFAFEIYFRKEKFLLMLQSVKRAFAIDSSHPWLHECMIRLFNTAVCESKDLSDTVRTVLKQEMNRLFGATNPKNFNETFLKRNSDSLPHRLSAAKMVYYLDPSSQKRAIELATTLDESLTNRNLQTCMEVLEALYDGSLGDCKEAAEIYRANCHKLFPYALAF 838 The following BLAST results are available for this feature:
BLAST of TCONS_00047018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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