TCONS_00046895 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046895
Unique NameTCONS_00046895
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1191

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046895 ID=TCONS_00046895|Name=TCONS_00046895|organism=Clytia hemisphaerica|type=transcript|length=1191bp
AATTGGTAATCGTAAACTATAAATGTGCTCAAAGTTATAAGGCCGAAATG
TATATATTGTAAAACCATCTGAAAGTTTAATGAAAAAGTTTCATTCTTAC
TTTTTGATAGAAATTAAAATGAATAGAATTTTTGGAACAGGAAAACCCAA
AGCTCCACCTCCTAATCTTACGGATTGTATCAATACTGTTGATAGCCGAG
GAGAATCAATTCAGAAGAAAATTAGCATGCTGGACAAAGAATTGATGAAA
TACAAAGAGcagatgaaaaaaatgagagACGGCCCATCAAAgAATATGGT
AAAGCAGAAAGCTATGAGAGTCTTGAAGCAGAAAAAGATGTATGAAAGTC
AACTGGAAAATCTTAGAAACCAATCCTTCAATATGGAGCAAGCCAATTTC
GCTACTCAGACACTCAAAGATACAAAAACTACTgTGGATGCAATGAAATT
AGGTgtcaaacaaatgaaaaaagaatacaaaaaaGTTGACATTGATCAAA
TTGAGGACTTACAAGACGACATGGAAGATATGTTAGACCAAGCCAATGAA
GTACAAGATGCATTAGGAAGAACTTATGGAATGCCTGAAATGGACGATGC
TGACCTTGATGCTGAATTGGATGCTTTGGGTGATGATATGTTTTTGGAAG
ATGATGCAGCATATTTAGATGAAGCTTCCAGTGCACCTTCTGTTCCAGGA
ACACTTCCTGGTGAAACTGACACTTCTGGTTCCAAAACTAAGGATGGTGT
CAAAGTCGATGAATTCGGATTACCTGAACTACCAtcataaaacgaaaaaa
tcacACATGAATATTATAttgattgttatttttcatcttttttatataaa
gtgtCATTTATGTTTTCTTGTACATTTTTCTTGGGAATCACTGCtaacaa
ttttatttaattCACTATAGTCAATGTCATTGGCAAATCCAAGCGCCAGT
GTAAAGGAACGCTGAAGGAAGCTTTCCTTTTTTCGACACAAGGATTTCAA
CCAAAATTGTCTTGTAAATCTGTACTTAGATATAATTTTTAGTTAATTGT
TTTGATTAGAATTATTAGTATTTGAATCAACTCAACAATCAAAATTTATC
CAGTCCCcaggttttcttttttctatggCTTGTAATTTTATGACTGTAGT
GATATTATATTTGACTCGAACCGAAAGAGGACTTAAAAGTG
Run BLAST on NCBI

protein sequence of TCONS_00046895-protein

>TCONS_00046895-protein ID=TCONS_00046895-protein|Name=TCONS_00046895-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MKKFHSYFLIEIKMNRIFGTGKPKAPPPNLTDCINTVDSRGESIQKKISM
LDKELMKYKEQMKKMRDGPSKNMVKQKAMRVLKQKKMYESQLENLRNQSF
NMEQANFATQTLKDTKTTVDAMKLGVKQMKKEYKKVDIDQIEDLQDDMED
MLDQANEVQDALGRTYGMPEMDDADLDAELDALGDDMFLEDDAAYLDEAS
SAPSVPGTLPGETDTSGSKTKDGVKVDEFGLPELPS
Run BLAST on NCBI

transcript from alignment at scaffold_118:247232..250114+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046895 ID=TCONS_00046895|Name=TCONS_00046895|organism=Clytia hemisphaerica|type=transcript|length=2883bp|location=Sequence derived from alignment at scaffold_118:247232..250114+ (Clytia hemisphaerica)
AATTGGTAATCGTAAACTATAAATGTGCTCAAAGTTATAAGGCCGAAATG
TATATATTGTAAAACCATCTGAAAGTTTAATGAAAAAGTTTCATTCTTAC
TTTTTGATAGAAATTAAAATGAATAGAATTTTTGGAACAGGAAAACCCAA
AGCTCCACCTCCTAATCTTACGGATTGTATCAATACTGTAAGtttattaa
ttaatttaatATTGTCTACAAAATTTGTTGGATTAGGGTTAACATTTTGT
TTCAAGAATTTATAAAGAGTGAAAGCATGGTATTGAAAAAACTACACAAA
TTTCAAAAGAGTCTACTTTTTGAGATTGTCCCctgtaaataaatttttaa
aaatcaaaatgaatgtTTAAATCTTgctaattttttaataaaacctAATT
AGTGATTGTAATTCCTGTCACGCTGAGTAAAATTTGTGACCTCAACTAAT
TTTTTGTTACATAAAAATTATCTTTAGGTTGATAGCCGAGGAGAATCAAT
TCAGAAGAAAATTAGCATGCTGGACAAAGAATTGATGAAATACAAAGAGc
agatgaaaaaaatgagagACGGCCCATCAAAggtatttttcatgatttca
tttCCCATAAccatttttatcatatttataGTCTTGCTTTATGATATTTG
TTTCTTAAaggtttgaaagtttttattcTCCTAATATTTAGTTTTCTCTT
TCAGAATATGGTAAAGCAGAAAGCTATGAGAGTCTTGAAGCAGAAAAAGA
TGTAAGATagaaaatttgacttttgacttttttaaagggGATAACTTGAT
AACGAGGAACTGGTTAGCTTAGCTTCACTGTAGGTGGAAGCAATATACAA
AGAATAATTTTTCctcagaaaaatatcaaataaattcCATTCTATCAATC
ATGGTTCATGTCAGATGTTCAAATATTAAGTACTAATTTTTTCTAGGTAT
GAAAGTCAACTGGAAAATCTTAGAAACCAATCCTTCAATATGGAGCAAGC
CAATTTCGCTACTCAGACACTCAAAGATACAAAAACTACTGTAAGTTTCA
tactatttttttaaatgttgagCATAAATAGAGCGAATCTTCTTTAATTA
GTAGAATTATTAATTATTTATTGTGATTCCAATATTGACTAATATATTAT
TTGACTTGATTTTATACTTAATAGGTTTTATCACAAAACTGATGATCATC
ACAAAAATGTGGTTTCAAAAAGGAAAGTATTAGAAGCATAAATTGTATTT
TGTCTAATAGATgtgttttttcttcatttcaggTGGATGCAATGAAATTA
GGTgtcaaacaaatgaaaaaagaatacaaaaaaGTTGACATTGATCAAAT
TGAGGTGAAATCCTTTTTACTTATTCTTCGTGTTATTCTGTTGAACTGTA
AAAATTGCTAAAAGTTTATTCAGTATTTACTACCTTGttagttaaaaaat
aaagtgaCCACTAGAAAAtgtaatttcatcaaaaaaaagtgtgtacatTA
GCACGTTTTTGTGTCTTTAGGACTTACAAGACGACATGGAAGATATGTTA
GACCAAGCCAATGAAGTACAAGATGCATTAGGAAGAACTTATGGAATGCC
TGAAATGGACGATGCTGACCTTGATGCTGGTATGCCAAAAGATCTGCTTG
ATTGTTTATAGATTCTTAGACtctactttaaaaagaaaacgttaTGTTTG
TTTGTGGAAAAACCTTCGCCATGTGTGGATGGTAACAGCCAGTTTTATTC
ACATTCTCCAAAAGTCTTTCTTAGAgctacaaaatcaataaaataacaAA
TTACTTAATCTACGTTTTTGGGCTCCTAATCTCTTTAAcaagtatttcaa
aaatatacaaggTCTGTGAATATATAGCAAGTTATTCGTTCTACATTtga
gatttgaaattttgcgaaTGGTGAAAATAATGTGTTTGAATCCCAAATAC
TTCCAGGCAGAGTGTTATAGAAGCATGATGATTGACTCTCTACCTTCATT
GATACACATGGCCTGTTTCTGACAAGAGAATCTCTTAAGAAAGTAGCGAT
GTCAACATTTCTCATCTCCTCTTGTGATCAGCTTCAGGACAAATGGCTCT
TTGTAACATttccaaattatttcatttttccataATGTTTAGAATTGGAT
GCTTTGGGTGATGATATGTTTTTGGAAGATGATGCAGCATATTTAGATGA
AGCTTCCAGTGCACCTTCTGTTCCAGGAACACTTCCTGGTGAAACTGACA
CTTCTGGTTCCAAAACTAAGGTAAAAGCTGGTCATGAAAAATGAGACAAA
GTTTTGTTCCCCttcatttcattcattttgttaaatttttagaGAGAGAT
CATATTGATGATACCTTTTTGGTTGGTTTATTTCACTTTAgtttcatttt
agtttaatacaatatttgcaatttttttacaCAGGATGGTGTCAAAGTCG
ATGAATTCGGATTACCTGAACTACCAtcataaaacgaaaaaatcacACAT
GAATATTATAttgattgttatttttcatcttttttatataaagtgtCATT
TATGTTTTCTTGTACATTTTTCTTGGGAATCACTGCtaacaattttattt
aattCACTATAGTCAATGTCATTGGCAAATCCAAGCGCCAGTGTAAAGGA
ACGCTGAAGGAAGCTTTCCTTTTTTCGACACAAGGATTTCAACCAAAATT
GTCTTGTAAATCTGTACTTAGATATAATTTTTAGTTAATTGTTTTGATTA
GAATTATTAGTATTTGAATCAACTCAACAATCAAAATTTATCCAGTCCCc
aggttttcttttttctatggCTTGTAATTTTATGACTGTAGTGATATTAT
ATTTGACTCGAACCGAAAGAGGACTTAAAAGTG

Coding sequence (CDS) from alignment at scaffold_118:247232..250114+

>TCONS_00046895 ID=TCONS_00046895|Name=TCONS_00046895|organism=Clytia hemisphaerica|type=CDS|length=5688bp|location=Sequence derived from alignment at scaffold_118:247232..250114+ (Clytia hemisphaerica)
ATGAAAAAGTTTCATTCTTACTTTTTGATAGAAATTAAAATGAATAGAAT
TTTTGGAACAGGAAAACCCAAAGCTCCACCTCCTAATCTTACGGATTGTA
TCAATACTGTTGATAGCCGAGGAGAATCAATTCAGAAGAAAATTAGCATG
CTGGACAAAGAATTGATGAAATACAAAGAGcagatgaaaaaaatgagagA
CGGCCCATCAAAgAATATGGTAAAGCAGAAAGCTATGAGAGTCTTGAAGC
AGAAAAAGATGTATGAAAGTCAACTGGAAAATCTTAGAAACCAATCCTTC
AATATGGAGCAAGCCAATTTCGCTACTCAGACACTCAAAGATACAAAAAC
TACTgTGGATGCAATGAAATTAGGTgtcaaacaaatgaaaaaagaataca
aaaaaGTTGACATTGATCAAATTGAGGACTTACAAGACGACATGGAAGAT
ATGTTAGACCAAGCCAATGAAGTACAAGATGCATTAGGAAGAACTTATGG
AATGCCTGAAATGGACGATGCTGACCTTGATGCTGAATTGGATGCTTTGG
GTGATGATATGTTTTTGGAAGATGATGCAGCATATTTAGATGAAGCTTCC
AGTGCACCTTCTGTTCCAGGAACACTTCCTGGTGAAACTGACACTTCTGG
TTCCAAAACTAAGGATGGTGTCAAAGTCGATGAATTCGGATTACCTGAAC
TACCAtcataaATGAAAAAGTTTCATTCTTACTTTTTGATAGAAATTAAA
ATGAATAGAATTTTTGGAACAGGAAAACCCAAAGCTCCACCTCCTAATCT
TACGGATTGTATCAATACTGTTGATAGCCGAGGAGAATCAATTCAGAAGA
AAATTAGCATGCTGGACAAAGAATTGATGAAATACAAAGAGcagatgaaa
aaaatgagagACGGCCCATCAAAgAATATGGTAAAGCAGAAAGCTATGAG
AGTCTTGAAGCAGAAAAAGATGTATGAAAGTCAACTGGAAAATCTTAGAA
ACCAATCCTTCAATATGGAGCAAGCCAATTTCGCTACTCAGACACTCAAA
GATACAAAAACTACTgTGGATGCAATGAAATTAGGTgtcaaacaaatgaa
aaaagaatacaaaaaaGTTGACATTGATCAAATTGAGGACTTACAAGACG
ACATGGAAGATATGTTAGACCAAGCCAATGAAGTACAAGATGCATTAGGA
AGAACTTATGGAATGCCTGAAATGGACGATGCTGACCTTGATGCTGAATT
GGATGCTTTGGGTGATGATATGTTTTTGGAAGATGATGCAGCATATTTAG
ATGAAGCTTCCAGTGCACCTTCTGTTCCAGGAACACTTCCTGGTGAAACT
GACACTTCTGGTTCCAAAACTAAGGATGGTGTCAAAGTCGATGAATTCGG
ATTACCTGAACTACCAtcataaATGAAAAAGTTTCATTCTTACTTTTTGA
TAGAAATTAAAATGAATAGAATTTTTGGAACAGGAAAACCCAAAGCTCCA
CCTCCTAATCTTACGGATTGTATCAATACTGTTGATAGCCGAGGAGAATC
AATTCAGAAGAAAATTAGCATGCTGGACAAAGAATTGATGAAATACAAAG
AGcagatgaaaaaaatgagagACGGCCCATCAAAgAATATGGTAAAGCAG
AAAGCTATGAGAGTCTTGAAGCAGAAAAAGATGTATGAAAGTCAACTGGA
AAATCTTAGAAACCAATCCTTCAATATGGAGCAAGCCAATTTCGCTACTC
AGACACTCAAAGATACAAAAACTACTgTGGATGCAATGAAATTAGGTgtc
aaacaaatgaaaaaagaatacaaaaaaGTTGACATTGATCAAATTGAGGA
CTTACAAGACGACATGGAAGATATGTTAGACCAAGCCAATGAAGTACAAG
ATGCATTAGGAAGAACTTATGGAATGCCTGAAATGGACGATGCTGACCTT
GATGCTGAATTGGATGCTTTGGGTGATGATATGTTTTTGGAAGATGATGC
AGCATATTTAGATGAAGCTTCCAGTGCACCTTCTGTTCCAGGAACACTTC
CTGGTGAAACTGACACTTCTGGTTCCAAAACTAAGGATGGTGTCAAAGTC
GATGAATTCGGATTACCTGAACTACCAtcataaATGAAAAAGTTTCATTC
TTACTTTTTGATAGAAATTAAAATGAATAGAATTTTTGGAACAGGAAAAC
CCAAAGCTCCACCTCCTAATCTTACGGATTGTATCAATACTGTTGATAGC
CGAGGAGAATCAATTCAGAAGAAAATTAGCATGCTGGACAAAGAATTGAT
GAAATACAAAGAGcagatgaaaaaaatgagagACGGCCCATCAAAgAATA
TGGTAAAGCAGAAAGCTATGAGAGTCTTGAAGCAGAAAAAGATGTATGAA
AGTCAACTGGAAAATCTTAGAAACCAATCCTTCAATATGGAGCAAGCCAA
TTTCGCTACTCAGACACTCAAAGATACAAAAACTACTgTGGATGCAATGA
AATTAGGTgtcaaacaaatgaaaaaagaatacaaaaaaGTTGACATTGAT
CAAATTGAGGACTTACAAGACGACATGGAAGATATGTTAGACCAAGCCAA
TGAAGTACAAGATGCATTAGGAAGAACTTATGGAATGCCTGAAATGGACG
ATGCTGACCTTGATGCTGAATTGGATGCTTTGGGTGATGATATGTTTTTG
GAAGATGATGCAGCATATTTAGATGAAGCTTCCAGTGCACCTTCTGTTCC
AGGAACACTTCCTGGTGAAACTGACACTTCTGGTTCCAAAACTAAGGATG
GTGTCAAAGTCGATGAATTCGGATTACCTGAACTACCAtcataaATGAAA
AAGTTTCATTCTTACTTTTTGATAGAAATTAAAATGAATAGAATTTTTGG
AACAGGAAAACCCAAAGCTCCACCTCCTAATCTTACGGATTGTATCAATA
CTGTTGATAGCCGAGGAGAATCAATTCAGAAGAAAATTAGCATGCTGGAC
AAAGAATTGATGAAATACAAAGAGcagatgaaaaaaatgagagACGGCCC
ATCAAAgAATATGGTAAAGCAGAAAGCTATGAGAGTCTTGAAGCAGAAAA
AGATGTATGAAAGTCAACTGGAAAATCTTAGAAACCAATCCTTCAATATG
GAGCAAGCCAATTTCGCTACTCAGACACTCAAAGATACAAAAACTACTgT
GGATGCAATGAAATTAGGTgtcaaacaaatgaaaaaagaatacaaaaaaG
TTGACATTGATCAAATTGAGGACTTACAAGACGACATGGAAGATATGTTA
GACCAAGCCAATGAAGTACAAGATGCATTAGGAAGAACTTATGGAATGCC
TGAAATGGACGATGCTGACCTTGATGCTGAATTGGATGCTTTGGGTGATG
ATATGTTTTTGGAAGATGATGCAGCATATTTAGATGAAGCTTCCAGTGCA
CCTTCTGTTCCAGGAACACTTCCTGGTGAAACTGACACTTCTGGTTCCAA
AACTAAGGATGGTGTCAAAGTCGATGAATTCGGATTACCTGAACTACCAt
cataaATGAAAAAGTTTCATTCTTACTTTTTGATAGAAATTAAAATGAAT
AGAATTTTTGGAACAGGAAAACCCAAAGCTCCACCTCCTAATCTTACGGA
TTGTATCAATACTGTTGATAGCCGAGGAGAATCAATTCAGAAGAAAATTA
GCATGCTGGACAAAGAATTGATGAAATACAAAGAGcagatgaaaaaaatg
agagACGGCCCATCAAAgAATATGGTAAAGCAGAAAGCTATGAGAGTCTT
GAAGCAGAAAAAGATGTATGAAAGTCAACTGGAAAATCTTAGAAACCAAT
CCTTCAATATGGAGCAAGCCAATTTCGCTACTCAGACACTCAAAGATACA
AAAACTACTgTGGATGCAATGAAATTAGGTgtcaaacaaatgaaaaaaga
atacaaaaaaGTTGACATTGATCAAATTGAGGACTTACAAGACGACATGG
AAGATATGTTAGACCAAGCCAATGAAGTACAAGATGCATTAGGAAGAACT
TATGGAATGCCTGAAATGGACGATGCTGACCTTGATGCTGAATTGGATGC
TTTGGGTGATGATATGTTTTTGGAAGATGATGCAGCATATTTAGATGAAG
CTTCCAGTGCACCTTCTGTTCCAGGAACACTTCCTGGTGAAACTGACACT
TCTGGTTCCAAAACTAAGGATGGTGTCAAAGTCGATGAATTCGGATTACC
TGAACTACCAtcataaATGAAAAAGTTTCATTCTTACTTTTTGATAGAAA
TTAAAATGAATAGAATTTTTGGAACAGGAAAACCCAAAGCTCCACCTCCT
AATCTTACGGATTGTATCAATACTGTTGATAGCCGAGGAGAATCAATTCA
GAAGAAAATTAGCATGCTGGACAAAGAATTGATGAAATACAAAGAGcaga
tgaaaaaaatgagagACGGCCCATCAAAgAATATGGTAAAGCAGAAAGCT
ATGAGAGTCTTGAAGCAGAAAAAGATGTATGAAAGTCAACTGGAAAATCT
TAGAAACCAATCCTTCAATATGGAGCAAGCCAATTTCGCTACTCAGACAC
TCAAAGATACAAAAACTACTgTGGATGCAATGAAATTAGGTgtcaaacaa
atgaaaaaagaatacaaaaaaGTTGACATTGATCAAATTGAGGACTTACA
AGACGACATGGAAGATATGTTAGACCAAGCCAATGAAGTACAAGATGCAT
TAGGAAGAACTTATGGAATGCCTGAAATGGACGATGCTGACCTTGATGCT
GAATTGGATGCTTTGGGTGATGATATGTTTTTGGAAGATGATGCAGCATA
TTTAGATGAAGCTTCCAGTGCACCTTCTGTTCCAGGAACACTTCCTGGTG
AAACTGACACTTCTGGTTCCAAAACTAAGGATGGTGTCAAAGTCGATGAA
TTCGGATTACCTGAACTACCAtcataaATGAAAAAGTTTCATTCTTACTT
TTTGATAGAAATTAAAATGAATAGAATTTTTGGAACAGGAAAACCCAAAG
CTCCACCTCCTAATCTTACGGATTGTATCAATACTGTTGATAGCCGAGGA
GAATCAATTCAGAAGAAAATTAGCATGCTGGACAAAGAATTGATGAAATA
CAAAGAGcagatgaaaaaaatgagagACGGCCCATCAAAgAATATGGTAA
AGCAGAAAGCTATGAGAGTCTTGAAGCAGAAAAAGATGTATGAAAGTCAA
CTGGAAAATCTTAGAAACCAATCCTTCAATATGGAGCAAGCCAATTTCGC
TACTCAGACACTCAAAGATACAAAAACTACTgTGGATGCAATGAAATTAG
GTgtcaaacaaatgaaaaaagaatacaaaaaaGTTGACATTGATCAAATT
GAGGACTTACAAGACGACATGGAAGATATGTTAGACCAAGCCAATGAAGT
ACAAGATGCATTAGGAAGAACTTATGGAATGCCTGAAATGGACGATGCTG
ACCTTGATGCTGAATTGGATGCTTTGGGTGATGATATGTTTTTGGAAGAT
GATGCAGCATATTTAGATGAAGCTTCCAGTGCACCTTCTGTTCCAGGAAC
ACTTCCTGGTGAAACTGACACTTCTGGTTCCAAAACTAAGGATGGTGTCA
AAGTCGATGAATTCGGATTACCTGAACTACCAtcataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029922XLOC_029922Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046895-exon-scaffold_118-1491911889:247232..247418TCONS_00046895-exon-scaffold_118-1491911889:247232..247418Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1510915933:247232..247418TCONS_00046895-exon-scaffold_118-1510915933:247232..247418Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1575043694:247232..247418TCONS_00046895-exon-scaffold_118-1575043694:247232..247418Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1491911889:247709..247813TCONS_00046895-exon-scaffold_118-1491911889:247709..247813Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1510915933:247709..247813TCONS_00046895-exon-scaffold_118-1510915933:247709..247813Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1575043694:247709..247813TCONS_00046895-exon-scaffold_118-1575043694:247709..247813Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1491911889:247936..247982TCONS_00046895-exon-scaffold_118-1491911889:247936..247982Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1510915933:247936..247982TCONS_00046895-exon-scaffold_118-1510915933:247936..247982Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1575043694:247936..247982TCONS_00046895-exon-scaffold_118-1575043694:247936..247982Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1491911889:248178..248271TCONS_00046895-exon-scaffold_118-1491911889:248178..248271Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1510915933:248178..248271TCONS_00046895-exon-scaffold_118-1510915933:248178..248271Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1575043694:248178..248271TCONS_00046895-exon-scaffold_118-1575043694:248178..248271Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1491911889:248514..248585TCONS_00046895-exon-scaffold_118-1491911889:248514..248585Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1510915933:248514..248585TCONS_00046895-exon-scaffold_118-1510915933:248514..248585Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1575043694:248514..248585TCONS_00046895-exon-scaffold_118-1575043694:248514..248585Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1491911889:248752..248860TCONS_00046895-exon-scaffold_118-1491911889:248752..248860Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1510915933:248752..248860TCONS_00046895-exon-scaffold_118-1510915933:248752..248860Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1575043694:248752..248860TCONS_00046895-exon-scaffold_118-1575043694:248752..248860Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1491911889:249374..249501TCONS_00046895-exon-scaffold_118-1491911889:249374..249501Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1510915933:249374..249501TCONS_00046895-exon-scaffold_118-1510915933:249374..249501Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1575043694:249374..249501TCONS_00046895-exon-scaffold_118-1575043694:249374..249501Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1491911889:249666..250114TCONS_00046895-exon-scaffold_118-1491911889:249666..250114Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1510915933:249666..250114TCONS_00046895-exon-scaffold_118-1510915933:249666..250114Clytia hemisphaericaexon
TCONS_00046895-exon-scaffold_118-1575043694:249666..250114TCONS_00046895-exon-scaffold_118-1575043694:249666..250114Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046895-proteinTCONS_00046895-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_118supercontigscaffold_118:247232..250114 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
211.783	214.519	225.433	246.644	116.053	79.117	134.282	141.846	198.528	159.326	204.132	127.5	121.844	105.975	101.404	98.541	123.184	120.144	99.6223	138.729	133.26	123.798	118.058	124.919	161.518	171.88	227.63	180.601	135.576	117.866
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Vocabulary: Biological Process
TermDefinition
GO:0007034vacuolar transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007034 vacuolar transport
Blast
[Close]
BLAST of TCONS_00046895 vs. Swiss-Prot (Human)
Match: CHMP5 (Charged multivesicular body protein 5 OS=Homo sapiens GN=CHMP5 PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 5.266e-87
Identity = 154/223 (69.06%), Postives = 191/223 (85.65%), Query Frame = 2 
Query:  119 MNRIFGTGKPKAPPPNLTDCINTVDSRGESIQKKISMLDKELMKYKEQMKKMRDGPSKNMVKQKAMRVLKQKKMYESQLENLRNQSFNMEQANFATQTLKDTKTTVDAMKLGVKQMKKEYKKVXXXXXXXXXXXXXXXXXQANEVQDALGRTYGMPEMXXXXXXXXXXXXXXXMFLEDDAAYLDEASSAPSVPGTLPGETDTSGSKTKDGVKVDEFGLPELPS 787
            MNR+FG  KPKAPPP+LTDCI TVDSR ESI KKIS LD EL+KYK+Q+KKMR+GP+KNMVKQKA+RVLKQK+MYE Q +NL  QSFNMEQAN+  Q+LKDTKTTVDAMKLGVK+MKK YK+V IDQIEDLQD +EDM++ ANE+Q+AL R+YG PE+D+ DL+AELDALGD++  ++D++YLDEA+SAP++P  +P +T     K KDGV VDEFGLP++P+
Sbjct:    1 MNRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTPELDEDDLEAELDALGDELLADEDSSYLDEAASAPAIPEGVPTDT-----KNKDGVLVDEFGLPQIPA 218
The following BLAST results are available for this feature:
BLAST of TCONS_00046895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHMP55.266e-8769.06Charged multivesicular body protein 5 OS=Homo sapi... [more]
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