TCONS_00046895-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046895-protein
Unique NameTCONS_00046895-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length236

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046895-protein ID=TCONS_00046895-protein|Name=TCONS_00046895-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MKKFHSYFLIEIKMNRIFGTGKPKAPPPNLTDCINTVDSRGESIQKKISM
LDKELMKYKEQMKKMRDGPSKNMVKQKAMRVLKQKKMYESQLENLRNQSF
NMEQANFATQTLKDTKTTVDAMKLGVKQMKKEYKKVDIDQIEDLQDDMED
MLDQANEVQDALGRTYGMPEMDDADLDAELDALGDDMFLEDDAAYLDEAS
SAPSVPGTLPGETDTSGSKTKDGVKVDEFGLPELPS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029922XLOC_029922Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046895TCONS_00046895Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Vocabulary: Biological Process
TermDefinition
GO:0007034vacuolar transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007034 vacuolar transport
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 78..105
NoneNo IPR availableCOILSCoilCoilcoord: 134..161
NoneNo IPR availableCOILSCoilCoilcoord: 48..68
NoneNo IPR availableGENE3D1.20.1170.10coord: 29..188
e-value: 1.3E-6
score: 27.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 194..236
IPR005024Snf7 familyPFAMPF03357Snf7coord: 26..206
e-value: 1.2E-51
score: 174.6

Blast
[Close]
BLAST of TCONS_00046895-protein vs. Swiss-Prot (Human)
Match: CHMP5 (Charged multivesicular body protein 5 OS=Homo sapiens GN=CHMP5 PE=1 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 3.316e-113
Identity = 154/223 (69.06%), Postives = 191/223 (85.65%), Query Frame = 0 
Query:   14 MNRIFGTGKPKAPPPNLTDCINTVDSRGESIQKKISMLDKELMKYKEQMKKMRDGPSKNMVKQKAMRVLKQKKMYESQLENLRNQSFNMEQANFATQTLKDTKTTVDAMKLGVKQMKKEYKKVDIDQIEDLQDDMEDMLDQANEVQDALGRTYGMPEMDDADLDAELDALGDDMFLEDDAAYLDEASSAPSVPGTLPGETDTSGSKTKDGVKVDEFGLPELPS 236
            MNR+FG  KPKAPPP+LTDCI TVDSR ESI KKIS LD EL+KYK+Q+KKMR+GP+KNMVKQKA+RVLKQK+MYE Q +NL  QSFNMEQAN+  Q+LKDTKTTVDAMKLGVK+MKK YK+V IDQIEDLQD +EDM++ ANE+Q+AL R+YG PE+D+ DL+AELDALGD++  ++D++YLDEA+SAP++P  +P +T     K KDGV VDEFGLP++P+
Sbjct:    1 MNRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTPELDEDDLEAELDALGDELLADEDSSYLDEAASAPAIPEGVPTDT-----KNKDGVLVDEFGLPQIPA 218
The following BLAST results are available for this feature:
BLAST of TCONS_00046895-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHMP53.316e-11369.06Charged multivesicular body protein 5 OS=Homo sapi... [more]
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