TCONS_00046801 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046801
Unique NameTCONS_00046801
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length253

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046801 ID=TCONS_00046801|Name=TCONS_00046801|organism=Clytia hemisphaerica|type=transcript|length=253bp
AACCAAGATCGACTGAAGAGCTCAGATCTAGACAATAACAAGATCCAGAA
AGTCACTAAAGTACAAAAAAGTACTGCTCGTCGAAGAAGTCCAACAAAAC
TATCTAATATCATTGTGACCACGTCAGATGCTCTTTTCGATCAACATGAT
AATGAAAGGCCGTGGAGCTTATACGACACTTCACTTGTCAGTTTTTGTAT
CGGAATATGGTTTCTTCTCATCAAGGTCTGCAGCATTGTCACCAACGATG
ATT
Run BLAST on NCBI

transcript from alignment at scaffold_117:323070..324374-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046801 ID=TCONS_00046801|Name=TCONS_00046801|organism=Clytia hemisphaerica|type=transcript|length=1305bp|location=Sequence derived from alignment at scaffold_117:323070..324374- (Clytia hemisphaerica)
AACCAAGATCGACTGAAGAGCTCAGATCTAGACAATAACAAGATCCAGAA
AGTCACTAAAGTACAAAAAAGGTATCTAAGCTAATCAATGATAGAAACTT
GGATTACTCGAGTTCATTCGTTTCCTCTCTTTGCTTCAATTAAGGGCTCT
GACCATAGTGAATTTTTCATAATTGCCGTGTTTAAAACGTGTTTTCTGAC
TGATGTAACCAACAAAACTATGGCATGTTATACATTTTCTGTTAGACAAA
CTATTCCTGAATCTGAAAATTCAAANNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTAAAGCTTTTGCCAAT
TTAACTTCATAGCAATGAGCCGATGGGTAAAGCCATTGATTTTCATTCAA
TATCACTCTACCTGATTTTATAGTACTGCTCGTCGAAGAAGTCCAACAAA
ACTATCTAATATCATTGTGACCACGTCAGATGCTCTTTTCGATCAACATG
ATAATGAAAGGCCGTGGAGCTTATACGACACTTCACTTGTCAGTTTTTGT
ATCGGAATATGGTTTCTTCTCATCAAGGTCTGCAGCATTGTCACCAACGA
TGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029862XLOC_029862Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046801-exon-scaffold_117-1575043694:324304..324374TCONS_00046801-exon-scaffold_117-1575043694:324304..324374Clytia hemisphaericaexon
TCONS_00046801-exon-scaffold_117-1575043694:323070..323251TCONS_00046801-exon-scaffold_117-1575043694:323070..323251Clytia hemisphaericaexon
TCONS_00046801-exon-scaffold_117-1510915933:324304..324374TCONS_00046801-exon-scaffold_117-1510915933:324304..324374Clytia hemisphaericaexon
TCONS_00046801-exon-scaffold_117-1510915933:323070..323251TCONS_00046801-exon-scaffold_117-1510915933:323070..323251Clytia hemisphaericaexon
TCONS_00046801-exon-scaffold_117-1491911889:324304..324374TCONS_00046801-exon-scaffold_117-1491911889:324304..324374Clytia hemisphaericaexon
TCONS_00046801-exon-scaffold_117-1491911889:323070..323251TCONS_00046801-exon-scaffold_117-1491911889:323070..323251Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:323070..324374 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	2.89761	4.50758	2.87536	1.71519	0.507314	0	0	1.59264	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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